AMCG00003688


Basic Information

Item Value
gene id AMCG00003688
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14607986 ~ 14617192 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003688
gtgtgtgtgttgtgtctcaTGCTTTCCAGTTTGCATTACTTTAATCGGTTATAAATGATTTAGTCGGTAATAATGCAAAAGTGCTGGATGAAGCAGAGTGAAAGCACCGCGCGAGTCCTAACGCTGCCCTTTAACCCCGTGGCCAAGGCAACGCGTTACCAAAACACGTGTTTGCATTGGCAACCGGCAGCAGAGGAGCGAGGCTGAGCGGCGGCTGAGCACAGGCTGAACACCGCCGTGTCTCTCCCCTTCACACTGAATTGTGCATCTTGATCAAACCCTTAACCGGGCGATGGACTCCCAGACCCTGCACTACGCTCTGGACCTGGTCTCCGGCAGCGGCTTAACCCTGAGCCCCGAGCAGAGGGCGGCCTTGCAGAGCTCCCTGGTCATCATGAGGGCGAACTACCGCTTCCACCGGGTTCTGTTCTGGGGCAAAATATTGTGCACCAAACAGGACTATTTCATAGCGCAGGGGCTCACAGAAGACGAGCTGGGCGAGAAGAAGACGTTGTACAGTTTAAATTGCATTGACTGGTACCTGCTGCCCCCTGCCACTGACACCCTGGTAGCGGAGACATCTGCGGTGAAGGGCCGCTTTGTGGGTGACCCCTCACATGAATATGAGCTGGTGGAGATGAAGAGGCagggggaaggagaggaggccatggAGGAGGATATCACActTAAAATCAAAGAGGAAAATCGTCTTGCAGCAACGATCTTTGTCTTAGACAAGGAAGTGTCAGTTGTACCCAGGGGGGCATTTATAAAGACTCCGCTTGGGCATGTCCAAAGAAACAGAAGTTTTGAAGTTAGACTAAAGAAGAAGTCTCTTCTGGAGAAAGCTGACCTGGATCCATCAATTGATTTCCTGGATTCAATTGAAGAAGACATACCAAAAGGATCATGGAGCCTGCAGTGGGAAAGAGGCAACAGCGTGCTGGTGCTGCGGAGTTTGCTGTGGCTCGGTCTCACTTTCTACCACGTCCCGATGACCCCACAGCACGGGTTCCTTTACATGGGAACCGGCCTGAAGAATCTGGATCTGCCATTCATGTTGTAACAGACAAaactcttattttctttaacctTTTAACAACAAGATTGAGTTTacttgatttaatatatatatttttctgtcctTTTAATAAACATGAAAGTTTGATAGTCAGTTTTGTGAGCATTAAGTATTTCATGGTCCTGTATTATGCTGAAGCTCTAAAGTAATGACTGAACTTTTAGACAGACTTTatataaatgaagaaaaggacAGATTTAGATTATCTAGCCTCACAATATGCAACCCTAACAAAACCTTATTGGAAGTGTAGCATGACACTGACTCAGAGAAAATTACATGTGACCACAAAACCATGAGGAGGGGATTATTGAGGTTCTCATCTAATTAAACTATGCTTGTGTGTCACTAGCAGTCATGGGTTTCATGTGACAACAAACTCTTTGGTGAGAACCTGAGCTTGTCCTGGTGTACAGAGCTGTTTTATTCTAGTAGGAATATTTTTTCTGGTGCATCTTTCCCAAATTTCTGCACTCCCTAAACTAGAACAATAGACAATAGGTTTAAGTTACAGGCAGGTAACTGTGTAATACAGATGTAATACAGTGCAAGTAATTGA

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0035082 axoneme assembly biological_process
GO:0031514 motile cilium cellular_component
GO:0005930 axoneme cellular_component

KEGG:

id description
K19757 RSPH9; radial spoke head protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003688 True 1640 mRNA 0.46 5 14607986 14617192

Neighbor

gene id symbol gene type direction distance location
AMCG00003682 NA coding upstream 27076 14564528 ~ 14580910 (+)
AMCG00003681 NA coding upstream 49793 14555990 ~ 14558193 (+)
AMCG00003683 NA coding upstream 59858 14540544 ~ 14548128 (+)
AMCG00003678 LOC108270052,LOC107665105,LOC107729283,LOC108428681,LOC107589599 coding upstream 191903 14408429 ~ 14416083 (+)
AMCG00003680 NA coding upstream 219436 14385138 ~ 14388550 (+)
AMCG00003691 NA coding downstream 379705 14996897 ~ 15005277 (+)
AMCG00003696 NA coding downstream 402216 15019408 ~ 15054371 (+)
AMCG00003695 NA coding downstream 447824 15065016 ~ 15096524 (+)
AMCG00003693 NA coding downstream 487552 15104744 ~ 15121566 (+)
AMCG00003694 NA coding downstream 527430 15144622 ~ 15156393 (+)
G2446 NA non-coding upstream 186676 14420731 ~ 14421310 (+)
G2380 NA non-coding upstream 528659 14079112 ~ 14079327 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 1066832 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 1092921 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 1094988 13512600 ~ 13512998 (+)
G2517 NA non-coding downstream 389154 15006346 ~ 15030368 (+)
G2563 NA non-coding downstream 497437 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 498513 15115705 ~ 15116972 (+)
G2571 NA non-coding downstream 511404 15128596 ~ 15130200 (+)
G2619 NA non-coding downstream 756003 15373195 ~ 15377637 (+)
G2440 NA other upstream 188254 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 1401147 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 1565389 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 1690984 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 2877995 11725083 ~ 11729991 (+)
AMCG00003690 NA other downstream 234560 14851752 ~ 14866758 (+)
AMCG00003702 NA other downstream 683888 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 1407679 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 2415378 17032570 ~ 17042594 (+)
G3047 NA other downstream 3064625 17681817 ~ 17683988 (+)

Expression


Co-expression Network