AMCG00003689


Basic Information

Item Value
gene id AMCG00003689
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14617463 ~ 14644456 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003689
ATGGCGGCGCGCAGCGTGCTGAGGTCTGTGTGCCTGGCAGCCGCGGGGTTTCGGCTTCTTGCTGGCGGTTACCAGCCTCGTATTGTACAGAGGATAACGAGACTGCCTGTATTATCCGCGTTGGGAAACATTCAGATCAGAGGCGTCAGAGACGttgTGGAGAAAACGGatggcaaaacaacaacaGATGTGCTGCTGCTCAGCCAGTTTATCCGGTCAGATGGAGGCATGCTCCCTCGCCGGATCACGGGCCTCTGCACAGAGGAGCACCGGAAGATTGAAGTCTGTGTGAAGATGGCCCACAGAGCAGGACTCCTTCCAGACCACAAGCCTCCATTGCCTGAGGATCATGTGCCAAAGAAACCGAAATCACAGCTAAATAGGTATTTAACCCGTTGGTCTATTGACACAGTGAAGCCTATCTGGAAAAAGGGACTGAAGTGGAGTAAGATACGGATGCCAGTGGGCCACTACAGACTGCAGGACAATGTCAAATATGGAAAGAAGCCTTATTACATAAGGCACTGA

Function

GO: NA

KEGG:

id description
K02963 RP-S18, MRPS18, rpsR; small subunit ribosomal protein S18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003689 True 528 mRNA 0.52 5 14617463 14644456

Neighbor

gene id symbol gene type direction distance location
AMCG00003687 NA coding downstream 85783 14528641 ~ 14531680 (-)
AMCG00003684 cdc42bpa coding downstream 134084 14476924 ~ 14483379 (-)
AMCG00003686 cdc42bpa coding downstream 155880 14426285 ~ 14461583 (-)
AMCG00003685 NA coding downstream 222559 14387555 ~ 14394904 (-)
AMCG00003677 LOC107733121,LOC107582237 coding downstream 262930 14338426 ~ 14354533 (-)
AMCG00003692 NA coding upstream 361961 15006417 ~ 15016678 (-)
AMCG00003698 plg coding upstream 477313 15121769 ~ 15133784 (-)
AMCG00003700 NA coding upstream 497779 15142235 ~ 15143695 (-)
AMCG00003699 NA coding upstream 513038 15157494 ~ 15159317 (-)
AMCG00003697 NA coding upstream 517369 15161825 ~ 15171332 (-)
G2447 NA non-coding downstream 196148 14420731 ~ 14421315 (-)
G2445 NA non-coding downstream 197731 14418578 ~ 14419732 (-)
G2444 LOC108270052,LOC108428681 non-coding downstream 201790 14415379 ~ 14415673 (-)
G2443 fzd3b,LOC107729283,LOC107734193,LOC107665105,LOC107589599,LOC108270052 non-coding downstream 207210 14409236 ~ 14410253 (-)
G2337 NA non-coding downstream 1108533 13507892 ~ 13508930 (-)
G2494 NA non-coding upstream 54503 14698959 ~ 14699237 (-)
G2565 NA non-coding upstream 471527 15115983 ~ 15116183 (-)
G2615 NA non-coding upstream 670940 15315396 ~ 15318210 (-)
G2636 NA non-coding upstream 733741 15378197 ~ 15378555 (-)
G2637 NA non-coding upstream 734302 15378758 ~ 15378981 (-)
G2373 esrrg other downstream 604442 14009458 ~ 14013021 (-)
AMCG00003667 NA other downstream 885424 13664743 ~ 13732039 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 1500803 13071796 ~ 13116660 (-)
G2236 NA other downstream 1581974 13034953 ~ 13035489 (-)
AMCG00003625 NA other downstream 2539311 12075319 ~ 12078152 (-)
G2500 NA other upstream 166330 14810786 ~ 14811331 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 871217 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 1962954 16607410 ~ 16628401 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other upstream 2223876 16868332 ~ 16871475 (-)
AMCG00003751 NA other upstream 2492792 17137248 ~ 17140382 (-)

Expression


Co-expression Network