AMCG00003690


Basic Information

Item Value
gene id AMCG00003690
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 14851752 ~ 14866758 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003690
ACTAGCAGGCGAGATCACCccactggggggtggggggtggaggcCGCACTGTCCCAGTACAAACGGCTCAGTGTGCTCCCGCACCCCGGGCCCCCCGCCGTGCCCTGCGGCCCCTGCCAGCAGCCTGCGGGATCCGGCCAGAGAGTTTCAAAGCGGTTGGCAACAGCCCACATACCTAAAGAAGGGGAGAGGCATCCGAATGAAGTTATACCTTTCCTGGATGTGTACAACAGGAGCTTCTGCCAGAGAAGAGAGCTATTAGTGGATATCTTTCAGGAGTATCCTGATGACatcgaatatatatataagccttCATGCGTACCTCTCATGCGATGTGCAGGATGCTGCAATGACGAAAGTTTAGAGTGCGTTCCCACAGAAACGTACAATGTGACAATGCTGATAATGAAAATCAAACCCTTCCACTTTGAAAAACCGGTACAAGTGAGTTTCACAGAACACAGTAGATGTGAATGCAGAATAAAGAAAGAtgttcaagaaaaaaaagaaaaaaaatcCAGGAAAGGCAAAGGCAAAGGcctaaagagaaagaaaaagaaaaaccgaGACAAAAAGCCCGACTCGTATGTCAGCTGTGCATTTTCCACGCCACAACTGCATTTGAGCATTTCACTCTTGATTGTTAAGTTAATTTGGGAGGAGGTTGTTTATGTCTTATAATTCACCTTGATCATGGCATGAGGCTTTGTCACGTGGTTTCCACACGTCTTTAATCCACTAGAGTGAATTTGTGGCACTTGGTCCCTAAAAGTGAAATTAGAAGGTAATGGCATCACTGAGCATGGCTTTCTGATGACGATACTAATCACAAACCTGGTTTGAATTGAATTGCGTATTTGTTTCTAGTGTCTTTTTAATGGCCTGCACGTATTACTCTATAAAGTTTTCTTTTAGTGCAGAGCTAGACACTGAAGCAAGacgtattgattgattgatattttTGTTGTGGTGGTAGAATTGGTATATTTGGGAAGACAGGGTTGCAATAAGCATGCTATAAAATAACAGGGCTTACAGTATACCATCTATTGTTGatttataaaatcatttttttgttctggtttttgaacaataatataattcacTTTGGGGAGAAAATCAATTGGTCACGCAAGCCTTCTGGCCCATTATATGGCTCTAAATGAGCAGATCAGATCAGAAAATGTTGGATAAACATTTGCATGTTCATGATCTTTTGATATTCAAAGCTTATTCAGGTCTATAGACCTACACACTGGCCTCTGTAACCCTACTCCAAATTTACGTATTTTGAATAAAGGTGCTCAAATGTCCAGTAATACATAATGTTCAGGTTCTTCCTATGTTCTTGTATtgcactgtttgtgtttttcaaacagctgtatttctgttggttgttttatttttatttgaaactgtggaaaaaaaaaatccaataaaagATACTGCATCTTTAAGCACCAGATActttgggttttatttaaacaCCTGCATGGATACTTTTTGTAGGAAACAGgatatgtatttacttttctccaagcctACACTTTTCAATTTGGTTGTAACTTCCTCCATTGTGAGAAATTAAGAGATCAATTTGTTTACAGTTCAATGTCCAATTGCCACATTACTCTTCACGCAGATTGTTATTGTCACAATTGCATGCTTGTGGGCAAATATACATCTTCAGACAACGTTTTGTGTGAGAAGGTCATCAACAAAGTGACTGCTTTGAAAGAGCACAAGAATATATAAGGGGGGAAGAAAGCAGGTCCTGGGCATTTTGGGTGTCTGATGTTTTGGTGCTTTTGAGATATGCCCTTGTGCGAAACCCTTACAAGTATTTGCTACTAATACGTCAGGAAATGGATGCTTTGTATTTGCAAGACTATTATAACAATGTGAGAGGTCACACACTTCACAATCATGCACTTTagctttttaaagaacaaatacGCACAGCTATATGATGTTGACTCAGACCACTCCACTGACCTCGCTCTGCTGAAGTTAGTGTGCCTGTGTACAACTACTCCACCAGGCACGCTGAATCACCTAGCTCTCAGCTAACATgttttacaaaactgttaagcacaaaaaactaaaacaaacaatgaataTCCTTATCCTTTTGAATGAAGTCCTTACATATGTGTTTGAGTGCTGCAGGTGCTTAATTCAAAAtctaaagcaaaacaatacaaataaaaagctaaaGGAGAATGATGTGGAGACTGTGCCCCTCAGGTCAAAGTACAGTGGCTTTGTTAACTTCTTCAGTGGAGAAATGTGACTGCCCCCTCTGCTCGCTCTCATCACAAGGTCTGCTTGATATTGTAGGGGGTTGCAtgtgttgtttctctctctgctaaAGCGCTATAGCTTAgacctctttttttttccttttttgcctTTTTGCAGCCACTGTGAGCCTTGTTCAGAGAGAAGAAAACGCTTGTTTGTACAGGATCCCCACACCTGTAAATGTTCCTGCAAATTCTCACAATTACATTGCAAGTCCAGACAGCTTGAGTTAAACGAAAGAACTTGCAGgtGTGATAAACCAAGAAGATGAGAGGCGGTGAAATGGACATTGAAATGAAGGATATACATAGCACAGCACTTTGAATTCTGATCATTGAGGATGCATTCCTTGGAAAGATTGTTGAAAGAAAATCATCCCATTGTATATTTTcgaaatattaatatatataaagagatgTGAATTGCTGCTAAAACATCAGCCCGGCTGGTGCTTGAGATGTCTgggatttgttctttttttttaaagaaaaaaaaaagattaattttatATTCTATTTCACTGGATATGGGTCTGCTGTGTACATAGACAAGGCAACAAGAGGTACATGAACCGGACACTGAGTACCTCGATCTTTCAGGAGTAATGGCTGCATTCAAGTTGGGAAATACAGAAAACCTACCAAGACACTTTCAGAAACATTCAAAGGTCCAAAAACATGTGGAACGGTGGAATTCCCTTGATCATTTCACTGCCTGCTTCTGTGAAGTCCCAACTGCAAGTCTGGAATCCGGATGATAGACAAGAAGGCAACTGTTGTGACTAACATCCAATAGGACAAAAGCATCTATTTAAAAGGGATATTAATTGTAGGTATATATAGAAAGATTGACACTAAATTACTTGATTCCATATTTTACCAAGGCTCAGTAGCAGTAGCTATGGTGAGGCCTCTGTGACTAGACTCCTTTAACtattaaattattactatttttccAAAGACAACATTGCGCACACCATtaagaataatattaaaagaaagagcaaaatctgtatatacatacttaATATCCCTTTCGTAGACAATGTAATAcagttaatttataattttagaaTATTTCAGTATTCTTTGTGTATTTAAGTTTATCTATTTATATGCAGTGTTACATtcaaaatgtcttgtttttctgaaaatatcATTGATGCCAATCAGCCCAGCTGCtccaactaaacaaaaaaatgtaaatggcctttttgtttaagaaaaaaaatacttcaacattcctgaaacatTTTTAGTAATGCCTGGTATTCTCCccaaagctttttaatttttatttctgtgtaatATGATCGGACAGTTTATTATCAGCTGACAAAACCTAGGCTCTCTTATGGATCTGATGCATGCTTCATTTGCAGATTATGCATCTGTGTCCAACAGTACTTGCTTAGACTCAATACGCTTAATCCAGTAATTGAAGAAATTGTCTACTGTGTATACAGTTTCTCTTTCTAGGCAATGAACATGTTGTATGGTGTACTGCTTGTCTTGCAAACTGCATGCCTGTAAACTAACGCAAAACTAAGGTATGTACCAGTTGCATGAGAGAGCTTGGGTTTCGTGATTGGCACCACAAAGTTAATATTACATTCTATTTGTATTGAACTGCTTTGTGTATCCATATTGTACAGCCACAGTTTTAGTATATTTTTTgtcacattaatatatttattggtgCTGTAAAGTGGTAAGTTTTAATATtaacatctgttttgttttagtgtaactagtataaacatatttattttcaaattatattgttttttattaaagagAAAATTGACTTTGAAA
>TU3032
CCGCGGTGGAAGAGCTGCAGGCAGACGCGCAACATTGCTCTGCACGCCGAGACCAGGACACCGATCCAGCGCCGGCTTCACCGACAcaggcttttttcccccctcggTTTCTTTCCCCCCAGTTATTATGGTTTTGATCCCCCCGCCCAGCCAGACACAAAGTTGCTGACGGTGAGTGAAAGTTTCGGACGGGGACCTCGGAGGAGAGAGTGGCACTGCGGGCACTGGATGTATGATTTGCGCTGGATTTCGGATGCGTGTTCAATAGAGCAGGACTGTGACTGTCTGAAAGGAGACCGTTTTTCTGGATACAGACACACTTCATCCATACATCACCAGGGGTTTCTTAAAGAGTCTTTCTTGGGATCATGGGATCTGTAAGACTATAACCTTCGAGAAGAGcaatactgtgctgtgctggtggtTTTAATGTAACCAATGTGAGTGAAGAAAGCgaccccttttttttttaatcagatacCAATTTAAACTTCGACATTCACCTTGGGAATACAATCATGAACTTTATTCTCACCCTAAtaaatctgggtttggcgggGCTTCTGTATTTGTCTACAGTAAAGGTTTACTCCCAGACACTAGCAGGCGAGATCACCccactggggggtggggggtggaggcCGCACTGTCCCAGTACAAACGGCTCAGTGTGCTCCCGCACCCCGGGCCCCCCGCCGTGCCCTGCGGCCCCTGCCAGCAGCCTGCGGGATCCGGCCAGAGAGTTTCAAAGCGGTTGGCAGTGAGAGTAGATTACTATCAGCTCTCAGCAGGCCGGTGCTTTTCTTGTGCCAGTGACAGCCCACATACCTAAAGAAGGGGAGAGGCATCCGAATGAAGTTATACCTTTCCTGGATGTGTACAACAGGAGCTTCTGCCAGAGAAGAGAGCTATTAGTGGATATCTTTCAGGAGTATCCTGATGACatcgaatatatatataagccttCATGCGTACCTCTCATGCGATGTGCAGGATGCTGCAATGACGAAAGTTTAGAGTGCGTTCCCACAGAAACGTACAATGTGACAATGCTGATAATGAAAATCAAACCCTTCCACTTTGAAAAACCGGTACAAGTGAGTTTCACAGAACACAGTAGATGTGAATGCAGAATAAAGAAAGAtgttcaagaaaaaaaagaaaaaaaatcCAGGAAAGGCAAAGGCAAAGGcctaaagagaaagaaaaagaaaaaccgaGACAAAAAGCCCGACTCGTATGTCAGCTGTGCATTTTCCACGCCACAACTGCATTTGAGCATTTCACTCTTGATTGTTAAGTTAATTTGGGAGGAGGTTGTTTATGTCTTATAATTCACCTTGATCATGGCATGAGGCTTTGTCACGTGGTTTCCACACGTCTTTAATCCACTAGAGTGAATTTGTGGCACTTGGTCCCTAAAAGTGAAATTAGAAGGTAATGGCATCACTGAGCATGGCTTTCTGATGACGATACTAATCACAAACCTGGTTTGAATTGAATTGCGTATTTGTTTCTAGTGTCTTTTTAATGGCCTGCACGTATTACTCTATAAAGTTTTCTTTTAGTGCAGAGCTAGACACTGAAGCAAGacgtattgattgattgatattttTGTTGTGGTGGTAGAATTGGTATATTTGGGAAGACAGGGTTGCAATAAGCATGCTATAAAATAACAGGGCTTACAGTATACCATCTATTGTTGatttataaaatcatttttttgttctggtttttgaacaataatataattcacTTTGGGGAGAAAATCAATTGGTCACGCAAGCCTTCTGGCCCATTATATGGCTCTAAATGAGCAGATCAGATCAGAAAATGTTGGATAAACATTTGCATGTTCATGATCTTTTGATATTCAAAGCTTATTCAGGTCTATAGACCTACACACTGGCCTCTGTAACCCTACTCCAAATTTACGTATTTTGAATAAAGGTGCTCAAATGTCCAGTAATACATAATGTTCAGGTTCTTCCTATGTTCTTGTATtgcactgtttgtgtttttcaaacagctgtatttctgttggttgttttatttttatttgaaactgtggaaaaaaaaaatccaataaaagATACTGCATCTTTAAGCACCAGATActttgggttttatttaaacaCCTGCATGGATACTTTTTGTAGGAAACAGgatatgtatttacttttctccaagcctACACTTTTCAATTTGGTTGTAACTTCCTCCATTGTGAGAAATTAAGAGATCAATTTGTTTACAGTTCAATGTCCAATTGCCACATTACTCTTCACGCAGATTGTTATTGTCACAATTGCATGCTTGTGGGCAAATATACATCTTCAGACAACGTTTTGTGTGAGAAGGTCATCAACAAAGTGACTGCTTTGAAAGAGCACAAGAATATATAAGGGGGGAAGAAAGCAGGTCCTGGGCATTTTGGGTGTCTGATGTTTTGGTGCTTTTGAGATATGCCCTTGTGCGAAACCCTTACAAGTATTTGCTACTAATACGTCAGGAAATGGATGCTTTGTATTTGCAAGACTATTATAACAATGTGAGAGGTCACACACTTCACAATCATGCACTTTagctttttaaagaacaaatacGCACAGCTATATGATGTTGACTCAGACCACTCCACTGACCTCGCTCTGCTGAAGTTAGTGTGCCTGTGTACAACTACTCCACCAGGCACGCTGAATCACCTAGCTCTCAGCTAACATgttttacaaaactgttaagcacaaaaaactaaaacaaacaatgaataTCCTTATCCTTTTGAATGAAGTCCTTACATATGTGTTTGAGTGCTGCAGGTGCTTAATTCAAAAtctaaagcaaaacaatacaaataaaaagctaaaGGAGAATGATGTGGAGACTGTGCCCCTCAGGTCAAAGTACAGTGGCTTTGTTAACTTCTTCAGTGGAGAAATGTGACTGCCCCCTCTGCTCGCTCTCATCACAAGGTCTGCTTGATATTGTAGGGGGTTGCAtgtgttgtttctctctctgctaaAGCGCTATAGCTTAgacctctttttttttccttttttgcctTTTTGCAGCCACTGTGAGCCTTGTTCAGAGAGAAGAAAACGCTTGTTTGTACAGGATCCCCACACCTGTAAATGTTCCTGCAAATTCTCACAATTACATTGCAAGTCCAGACAGCTTGAGTTAAACGAAAGAACTTGCAGgtGTGATAAACCAAGAAGATGAGAGGCGGTGAAATGGACATTGAAATGAAGGATATACATAGCACAGCACTTTGAATTCTGATCATTGAGGATGCATTCCTTGGAAAGATTGTTGAAAGAAAATCATCCCATTGTATATTTTcgaaatattaatatatataaagagatgTGAATTGCTGCTAAAACATCAGCCCGGCTGGTGCTTGAGATGTCTgggatttgttctttttttttaaagaaaaaaaaaagattaattttatATTCTATTTCACTGGATATGGGTCTGCTGTGTACATAGACAAGGCAACAAGAGGTACATGAACCGGACACTGAGTACCTCGATCTTTCAGGAGTAATGGCTGCATTCAAGTTGGGAAATACAGAAAACCTACCAAGACACTTTCAGAAACATTCAAAGGTCCAAAAACATGTGGAACGGTGGAATTCCCTTGATCATTTCACTGCCTGCTTCTGTGAAGTCCCAACTGCAAGTCTGGAATCCGGATGATAGACAAGAAGGCAACTGTTGTGACTAACATCCAATAGGACAAAAGCATCTATTTAAAAGGGATATTAATTGTAGGTATATATAGAAAGATTGACACTAAATTACTTGATTCCATATTTTACCAAGGCTCAGTAGCAGTAGCTATGGTGAGGCCTCTGTGACTAGACTCCTTTAACtattaaattattactatttttccAAAGACAACATTGCGCACACCATtaagaataatattaaaagaaagagcaaaatctgtatatacatacttaATATCCCTTTCGTAGACAATGTAATAcagttaatttataattttagaaTATTTCAGTATTCTTTGTGTATTTAAGTTTATCTATTTATATGCAGTGTTACATtcaaaatgtcttgtttttctgaaaatatcATTGATGCCAATCAGCCCAGCTGCtccaactaaacaaaaaaatgtaaatggcctttttgtttaagaaaaaaaatacttcaacattcctgaaacatTTTTAGTAATGCCTGGTATTCTCCccaaagctttttaatttttatttctgtgtaatATGATCGGACAGTTTATTATCAGCTGACAAAACCTAGGCTCTCTTATGGATCTGATGCATGCTTCATTTGCAGATTATGCATCTGTGTCCAACAGTACTTGCTTAGACTCAATACGCTTAATCCAGTAATTGAAGAAATTGTCTACTGTGTATACAGTTTCTCTTTCTAGGCAATGAACATGTTGTATGGTGTACTGCTTGTCTTGCAAACTGCATGCCTGTAAACTAACGCAAAACTAAGGTATGTACCAGTTGCATGAGAGAGCTTGGGTTTCGTGATTGGCACCACAAAGTTAATATTACATTCTATTTGTATTGAACTGCTTTGTGTATCCATATTGTACAGCCACAGTTTTAGTATATTTTTTgtcacattaatatatttattggtgCTGTAAAGTGGTAAGTTTTAATATtaacatctgttttgttttagtgtaactagt

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0048793 pronephros development biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0031334 positive regulation of protein-containing complex assembly biological_process
GO:0048844 artery morphogenesis biological_process
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0051894 positive regulation of focal adhesion assembly biological_process
GO:0030878 thyroid gland development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0043491 protein kinase B signaling biological_process
GO:0001938 positive regulation of endothelial cell proliferation biological_process
GO:0035477 regulation of angioblast cell migration involved in selective angioblast sprouting biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0005576 extracellular region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003690 False 4118 mRNA 0.38 7 14853281 14866758
TU3032 True 4711 lncRNA 0.43 8 14851752 14866698

Neighbor

gene id symbol gene type direction distance location
AMCG00003688 NA coding upstream 234560 14607986 ~ 14617192 (+)
AMCG00003682 NA coding upstream 270842 14564528 ~ 14580910 (+)
AMCG00003681 NA coding upstream 293559 14555990 ~ 14558193 (+)
AMCG00003683 NA coding upstream 303624 14540544 ~ 14548128 (+)
AMCG00003678 LOC108270052,LOC107665105,LOC107729283,LOC108428681,LOC107589599 coding upstream 435669 14408429 ~ 14416083 (+)
AMCG00003691 NA coding downstream 130139 14996897 ~ 15005277 (+)
AMCG00003696 NA coding downstream 152650 15019408 ~ 15054371 (+)
AMCG00003695 NA coding downstream 198258 15065016 ~ 15096524 (+)
AMCG00003693 NA coding downstream 237986 15104744 ~ 15121566 (+)
AMCG00003694 NA coding downstream 277864 15144622 ~ 15156393 (+)
G2446 NA non-coding upstream 430442 14420731 ~ 14421310 (+)
G2380 NA non-coding upstream 772425 14079112 ~ 14079327 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 1310598 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 1336687 13514660 ~ 13515065 (+)
G2333 NA non-coding upstream 1338754 13512600 ~ 13512998 (+)
G2517 NA non-coding downstream 139588 15006346 ~ 15030368 (+)
G2563 NA non-coding downstream 247871 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 248947 15115705 ~ 15116972 (+)
G2571 NA non-coding downstream 261838 15128596 ~ 15130200 (+)
G2619 NA non-coding downstream 506437 15373195 ~ 15377637 (+)
G2440 NA other upstream 432020 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 1644913 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 1809155 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 1934750 12902566 ~ 12917002 (+)
AMCG00003614 NA other upstream 3121761 11725083 ~ 11729991 (+)
AMCG00003702 NA other downstream 434322 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 1158113 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 2165812 17032570 ~ 17042594 (+)
G3047 NA other downstream 2815059 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 3265161 18131919 ~ 18142633 (+)

Expression


Co-expression Network