AMCG00003694


Basic Information

Item Value
gene id AMCG00003694
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15144622 ~ 15156393 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003694
GAGAATATTCCAGAAAACGATAACGTCCAGACTAGACATCTGTCCCCTATCAAAGAAGAAAGTGCTGAGCAAGGCGAGCAGATTTGTCCTGTCAGCCCATTTGGGATACGAAGGAGACGTTCTGTTCACCCCGAGGACAGACCCATAAGACCCATAGTTGGAGTGAAAAAGAAGACCTTTGAGGAGTTTGTTGAAGAGCAGCTGAAAGTGGATGAAGAAGTTCTTGAGAAAGAAAAGCAGGAACTGAAAGAATGTAAGGAGTCAGGAAGAAAGAATTTCCTGAGGAAGGGGGAGGGTATATCTCGGATAGAGAAGACCAGGTTTAACGCACttagggagaggaggagagcatCACTGTGTCAGATGCCCAAGCAAGTGAACTTTGTCAGCCAGCACAGGCGCTCCCTGCCCACCCTGCAGGACTCTGATACAGTGGGGTTGAGGAAGATGACTCCCTTAAACTCTCAGGTCAGCAGTCCTGCCATGATGGAGTATAGAGAGAGAAGTGTTCAGGCTGCCAAAGCAGACGCCTACAGCAGCCTTCACCGCACAGCCGAACTGGAGCAGCGTGTGGGGAAAACAACTGCAGCACAAAGTGGATTAAAAGATAACACGAACAAGAACAATACTGGGAAAAGAGGGGTATTAGATCAAACTCCAGGCAAGAGGAGGACCTGGAGATCCAGAAGCGCAAGTCTGTCATCCTTGGGAATCTCAGACACCGTGGGGTTCCACTCCCTCCTGGGTGTCGCGGAAAAGGACAGTCACTCGAGCCCCTGGACACGACAGGGAGCCGAGCAGCCCCTAGCAGCACAAGCCCCCGAGAGCGCGGCCGCCTTGAGGGATGGACGCCAGTCAACGGAGACTGATAAAATGGGACCTGGTCCCGAGTTTAAAAAAGTCAACGACCGCATTGTCCGGGTTTCTGACGGGGCGGACCTCTCAACGCACAGTGGCGGCGAGAAAAGCGTAATCCGGGCGAGATGTGGGGCGGGCAGGGAGATACACACCTGGAGGACAGAGGAGATGCAGTTCCAACCTCCCAGCAGCACCGGGGACAGTACCAGCAGTGAGGTCGACCCCAAGTCTCAGTGCCATGAGCAGCCCACCCACCAGGCCCCTCTCCGGCTGGGACACACCGACCGCAACCTCGACCTGTCAGAAGATGACTATGCCAGCGATGCCCCGAGCGGGGGGGAAGAAGCGGCTTCCAGACCCCAGACTCCTCACCGATTTTCTCTTCTGCATCAgatctccagcagcagcagcaccagcacaAGTGACAGCAGCAGCGATGAACTCAGGAGCTATAACTGGCACAAAAAGGCAGTAGCTTCTCCACAGCACAGGTCCCCGAAAAAGGAGCTGACAGACAAGAGAAGGACACCATTTCTACCTGGTAACGACAGCAGCTGGAAAGCCAATATTAAACCTCCTTCCACTTCTGAGCTTGTGGCAAGCCTGTTCCCTGGattaaaaacaagagaaaaggACACATCCCAGAGCAAAGAGACAGGGGTATCACAGCAGCCTGAAGACAATCAGTATGAAAATCCAAGACATCAGGAGTTAAAAGCAGAGATGGAccacagtgcagtgctggaCAAACTGAAAGAGGAACAAGAGAAAGCCCTCCAATTTCTAAGGAAGAAAATGACTGGACTTGAGCAAGAAAATGGAGAGCTTGAACTGAAGGAGCAGATGAAGGCCTTGCAGGAGGAGCTCAAGCAGCGCGAGGATCGCTGGTCGGCCGCTCACGGGCAGCTGACGAGCCAAGTGGTGGCGCTGACCAGGGAGAACGTGGAGCTGAGAGACGAGCTGAAGGTGTCAGAGAAACACCGCCAAGAGGCCTGGAGGTCTCATGATATGACACCGAGGCCCAGCCGGAAAGCAGACACCCCAGTCTCCGAAGCTATACTGATAGGCACTTGTCAGCTGAAGAGTGAAGACAGGCCTGCCAGCTGCTCCGGGCGCAGTGGTGCTCCGGTCGGGAGGAAGTTACAGTTTGAGAGGCCGCTTTCAAGCAAACCTGAGGTCAAGGCCATCCAGCATATTAGTGCTGAGGTCCAGAGGGCGAAGGACAGGAGATCTCCGTTCCTGAGCCAACATGTTTCTGCAGGGACAGAGGTTTCATCTACATGTGGCCACTCTTCACATTCAGCCAGTTCAGAGGATCCTCACAACCCCGACAACCACGACTCCAGACCACAGAGCCGCAGCCGCGACAGGTTTCAGGAAACAAGAGGACAATCCGGGGTTTCCAGGGGAGTGTCACCCTACACAGGGGTCAAGGGTGGTGATGATGAAGTTGTGGAAGAAACACACTACCCAGATGGCAAGAAAGACCAGCTGTTCTCAAGTGGCCGACGCGTAATAACCTTCCGCAACGCAACAAGGAAGGAGATCGGTATCGACGGGAAGTCTGTGACAGTCACCTTCTTCAATGGGGACATCAAGAAAGTGCTCTCGGATGAGAAGGTGATTTACTTTTATGCCGATGCACAGACAACGCATACCACTTATCCGAATGGCCTTGAGGTCCTGCAGTTCCCCAATAACCAGATAGAGAAACATCACCCAAATGGTACAAAGGAAATCGTTTTCCCAGACCAAACAGTCAAGCACCTCTATCCCGATGGCCGAGAAGAAAGCGTTTTTCCTGATGGCACAGTGGTGAAACTAGCAAAGAACGGAGAAAAGACGGTGGAATTCAGCAACGGGCAGCGCGAGATCCACACCTCACAGTACAAGCGCAGGGAGTATCCAGACGGAACAGTGAAGACTGTTTATTCAAATGGAAGACAGGAAACCAAGTACTCTACAGGCAGAGTGCGCATCAAAGACAGAGAAGGCTCAATTATCATGGACAAGAAATGACATGCACAAAAATTAGGGCAAGGGTTTTGAGTTTTGTGAGATACGTTTTTCTGTATGCAGTGCTAAACTCAAATACAGTACCACAACATTTCTCCCACTAAAACTATCCTCAGACTATCCAAATGACTTGAAAAGGTTTGAGGAATCAGTATTTCTTCTAGAGGTAAGATGTCTACAATTCCCTAATTTATTTGTTGACATTATACCTATTAATATGTGAatatcagataaaaaaaaattacaggcGATTGTTGTTGTAGtcataaattatgtatttttttactgtgaATAGCATATATGGGTTACATACAAGATTgtatacttattatttttagtaccttttgtttattcatgtcaGCAGTTTCTAATGAAATATAGCTGCTTTTCAATGAAGGCATTGATGTGCAGAggctctctatctctctctctctctctctctctctatatatatatatatatggtgtttATATTTAATGGATATTTCCATGTTGGAGTGATTGTtgtataaattaacattttataataaataatgaccaTGTATTTCATTTAACCATATATCAGCACACAATTATAAAGCATTTCAG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003694 True 3461 mRNA 0.49 14 15144622 15156393

Neighbor

gene id symbol gene type direction distance location
AMCG00003693 NA coding upstream 23056 15104744 ~ 15121566 (+)
AMCG00003695 NA coding upstream 48098 15065016 ~ 15096524 (+)
AMCG00003696 NA coding upstream 90251 15019408 ~ 15054371 (+)
AMCG00003691 NA coding upstream 139345 14996897 ~ 15005277 (+)
AMCG00003688 NA coding upstream 527430 14607986 ~ 14617192 (+)
AMCG00003703 NA coding downstream 98663 15255056 ~ 15289576 (+)
AMCG00003705 NA coding downstream 177608 15334001 ~ 15334318 (+)
AMCG00003701 LOC106607895,LOC106571478 coding downstream 197085 15353478 ~ 15370866 (+)
AMCG00003706 NA coding downstream 238420 15394813 ~ 15398406 (+)
AMCG00003711 NA coding downstream 570049 15726442 ~ 15751861 (+)
G2571 NA non-coding upstream 14422 15128596 ~ 15130200 (+)
G2564 NA non-coding upstream 27650 15115705 ~ 15116972 (+)
G2563 NA non-coding upstream 29785 15114629 ~ 15114837 (+)
G2517 NA non-coding upstream 114254 15006346 ~ 15030368 (+)
G2446 NA non-coding upstream 723312 14420731 ~ 14421310 (+)
G2619 NA non-coding downstream 216802 15373195 ~ 15377637 (+)
G2641 NA non-coding downstream 260583 15416976 ~ 15419869 (+)
G2681 NA non-coding downstream 748090 15904483 ~ 15904820 (+)
G2698 NA non-coding downstream 876315 16032708 ~ 16032935 (+)
G2719 NA non-coding downstream 924789 16081182 ~ 16084866 (+)
AMCG00003690 NA other upstream 277864 14851752 ~ 14866758 (+)
G2440 NA other upstream 724890 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 1937783 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 2102025 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 2227620 12902566 ~ 12917002 (+)
AMCG00003702 NA other downstream 144687 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 868478 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 1876177 17032570 ~ 17042594 (+)
G3047 NA other downstream 2525424 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 2975526 18131919 ~ 18142633 (+)

Expression


Co-expression Network