AMCG00003708 (crim1,LOC107582940,LOC107662656,LOC107730553,LOC107679775)


Basic Information

Item Value
gene id AMCG00003708
gene name crim1,LOC107582940,LOC107662656,LOC107730553,LOC107679775
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15478494 ~ 15487201 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003708
ATGTGGCTCATCTTAGGTACCACGCGAGAAACCAAGCCAGCCTGCATCTTCAACGGGGTGGAATACTACGACGGGGACATGTTTCGGATGGACGCCTGCCGCTTCTGCCGCTGTCAGGGGGGAGTCTCCATCTGCTTCACCGCCCAGTGTGGCGTCCTGCACTGTGACCGATACTACGTGCCTGAGGGAGAGTGCTGCCCAGTCTGTGAAGATCCCATGTACCCCGTGCTGAACCTCGCTGGCTGCTACGTCAACGGACAGATCCTGGCACATGGTGACCACTGGCGAGAGGACGACTGCACGTTCTGCCAATGTGTTGGTGGAGATGCCCGCTGTGTGGCGGCTGCTTGTGGGCACAGCTGTCTCAACCCCGTGACTGTGCCAGGGGAGTGCTGCCCGGTGTGTGAAGtgTACAGGTGTTAG

Function

symbol description
crim1 Predicted to enable insulin-like growth factor binding activity and serine-type endopeptidase inhibitor activity. Acts upstream of or within blood vessel development; notochord morphogenesis; and somitogenesis. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; intermediate cell mass of mesoderm; notochord; otic vesicle; and posterior segment eye. Used to study cataract and microphthalmia. Orthologous to human CRIM1 (cysteine rich transmembrane BMP regulator 1).

NR:

description
Cysteine rich transmembrane BMP regulator 1 (chordin like)

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0001558 regulation of cell growth biological_process
GO:0001568 blood vessel development biological_process
GO:0005576 extracellular region cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003708 True 423 mRNA 0.60 4 15478494 15487201

Neighbor

gene id symbol gene type direction distance location
AMCG00003707 NA coding downstream 22243 15419692 ~ 15456251 (-)
AMCG00003704 NA coding downstream 89573 15381456 ~ 15388921 (-)
AMCG00003697 NA coding downstream 307162 15161825 ~ 15171332 (-)
AMCG00003699 NA coding downstream 319177 15157494 ~ 15159317 (-)
AMCG00003700 NA coding downstream 334799 15142235 ~ 15143695 (-)
AMCG00003709 crim1,LOC107730553,LOC107679775,LOC107662656,LOC106601300 coding upstream 28471 15515672 ~ 15519593 (-)
AMCG00003710 crim1,LOC107719193,LOC107679775,LOC107602268,LOC107662656,LOC107730201 coding upstream 103421 15590622 ~ 15591023 (-)
AMCG00003714 ints9 coding upstream 555527 16042728 ~ 16055653 (-)
AMCG00003717 NA coding upstream 607945 16095146 ~ 16116740 (-)
AMCG00003716 NA coding upstream 688570 16175771 ~ 16181167 (-)
G2637 NA non-coding downstream 99513 15378758 ~ 15378981 (-)
G2636 NA non-coding downstream 99939 15378197 ~ 15378555 (-)
G2615 NA non-coding downstream 160284 15315396 ~ 15318210 (-)
G2565 NA non-coding downstream 362311 15115983 ~ 15116183 (-)
G2494 NA non-coding downstream 779257 14698959 ~ 14699237 (-)
G2661 NA non-coding upstream 22672 15509873 ~ 15510081 (-)
G2682 NA non-coding upstream 417286 15904487 ~ 15904821 (-)
G2697 NA non-coding upstream 542223 16029424 ~ 16030186 (-)
G2699 NA non-coding upstream 545486 16032687 ~ 16032922 (-)
G2720 NA non-coding upstream 592198 16079399 ~ 16084866 (-)
G2500 NA other downstream 667163 14810786 ~ 14811331 (-)
G2373 esrrg other downstream 1465473 14009458 ~ 14013021 (-)
AMCG00003667 NA other downstream 1746455 13664743 ~ 13732039 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 2361834 13071796 ~ 13116660 (-)
G2236 NA other downstream 2443005 13034953 ~ 13035489 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other upstream 28472 15515673 ~ 15591730 (-)
AMCG00003734 NA other upstream 1120209 16607410 ~ 16628401 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other upstream 1381131 16868332 ~ 16871475 (-)
AMCG00003751 NA other upstream 1650047 17137248 ~ 17140382 (-)
G3181 NA other upstream 2455376 17942577 ~ 17944942 (-)

Expression


Co-expression Network