AMCG00003719


Basic Information

Item Value
gene id AMCG00003719
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16287662 ~ 16288702 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003719
CTGCTCAAGCTGGCTGTCCTACCGATTGTCCTGCTGGTTCTGGGGGCAGAAGGCGCCCACATAGCGAAGGCCAGGAAGGACTGTCACCATTCAGACTCTCAGAAGGTCGTTCAGGTGGCCTTGGATTTCAGTGTGAATTCCAGGGTCACCATGAGCCGCAATGCTGCCAGTCGGTCCCTTTCCCCCTGGACATACAGCCAACCCGCCGGGGACACGGGGGTCTTCCCTCAGTACCACCAGGTTGTGTGTCAACACCAGGGCTGTGTGAAGGATGGGGAGCTGCTCATGGGGTACAACTCCGTTCCCATAATCCAGGACGTCCTGGTCCTGCGGAGAGTGAAGGACAAGTGCGGATACATGTTCCTGCTGGAGACCAGGAATGTCACGCTGGGCTGCACCTGCGTCAAGGCGGACGTAACAATGCAGCACCAGCTctaa

Function

GO:

id name namespace
GO:0071222 cellular response to lipopolysaccharide biological_process

KEGG:

id description
K05494 IL17F, ML1; interleukin 17F

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003719 True 438 mRNA 0.58 2 16287662 16288702

Neighbor

gene id symbol gene type direction distance location
AMCG00003720 mcm3 coding upstream 21964 16258454 ~ 16265698 (+)
AMCG00003718 NA coding upstream 77385 16207847 ~ 16210277 (+)
AMCG00003715 elp3,LOC107696156,LOC107698368,LOC107599080 coding upstream 126580 16136846 ~ 16161082 (+)
AMCG00003713 NA coding upstream 208347 16071552 ~ 16079315 (+)
AMCG00003711 NA coding upstream 535801 15726442 ~ 15751861 (+)
AMCG00003727 NA coding downstream 126748 16415450 ~ 16427708 (+)
AMCG00003730 snap25,snap25a,LOC107698362,LOC107719097,LOC102796069,LOC103398514,LOC107599071 coding downstream 229404 16518106 ~ 16522586 (+)
AMCG00003729 NA coding downstream 258370 16547072 ~ 16569703 (+)
AMCG00003733 kif28p coding downstream 287686 16576388 ~ 16589499 (+)
AMCG00003737 NA coding downstream 363132 16651834 ~ 16660947 (+)
G2755 NA non-coding upstream 56164 16229935 ~ 16231498 (+)
G2721 NA non-coding upstream 201670 16085140 ~ 16085992 (+)
G2719 NA non-coding upstream 202796 16081182 ~ 16084866 (+)
G2698 NA non-coding upstream 254727 16032708 ~ 16032935 (+)
G2681 NA non-coding upstream 382842 15904483 ~ 15904820 (+)
G2797 NA non-coding downstream 140332 16429034 ~ 16430555 (+)
G2833 NA non-coding downstream 304562 16593264 ~ 16597369 (+)
G2836 NA non-coding downstream 310356 16599058 ~ 16599329 (+)
G2861 NA non-coding downstream 579597 16868299 ~ 16934020 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding downstream 919333 17208035 ~ 17210041 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 248022 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 969434 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 1420904 14851752 ~ 14866758 (+)
G2440 NA other upstream 1867930 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 3080823 13155060 ~ 13206839 (+)
AMCG00003744 NA other downstream 743868 17032570 ~ 17042594 (+)
G3047 NA other downstream 1393115 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 1843217 18131919 ~ 18142633 (+)
G3108 NA other downstream 1857958 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 2983263 19271965 ~ 19397686 (+)

Expression


Co-expression Network