AMCG00003727


Basic Information

Item Value
gene id AMCG00003727
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16415450 ~ 16427708 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003727
cGCAGGAACTGGTGCGCGTACGTGGTGACGCGGACGGTGAGCTGTGTTGTGGAGGATGGAGTGGAGACCTACGTGAAGCCGGACTACCAGCCCTGCTCCTGGGGCCAGATTCAGTGTGCTAGGGTTGTGACGTATCGGACCTACATGCGGCCTCGGTACAAAGTTGCTTATAAGATGGTGACGGAGATGGAGTGGAAATGTTGCCATGGTTTCTCCGGAGACGACTGCAGCGAGGGGCCGAGCGGAGgccagacacagacacagatctCGACTGTCAGGCCCAGGCCCAAGCCTCACCGCCCCGGGCAGACTGGCTCAAACTCTGGCACAGTGCAGATTGGAGGAGAAGGGAGAGGGGAGAGCGACAAGGTGAAGCAGCTGGAAGACAAAATCCAGAGTCTGACCAAAGACCTCCATGACCTGCAGTCCACTCTGCGAGGGCTGAATGACAAGTTCCAGGAAGAGATCCGGAAGCCAGGGATCAACGGCAAGGTGCCTGCAGATGCTGCCGAGCCAGAGATGAAAGAGACACTCAACAGCATCCAGACCAAGCTGGACCAGCTCGACAACCGCACGCAGGCGCACGACAAGAAGCTGGTCACCATCAACAACCACCTAACCAATGGCAAGGGCACGAACAGCAACGAACTGGAGAGCTCTGATGTCACAGTGCAGAGGAAGTTCACGGAACTGAGGGAGGAGATCCTGAAAGAGGTGGAGGGGAGAATCAAGCAGTCCTGCGCAGCCTGCCAGACGGGGGCAGAGGATctgaagaagcagcagcaggaggatcGCGAGAGGATCCGGGAGCTGGAGAAGCTCATCAGTTCCATGGACCAGCGTAACCGGGAGATGCTTGAGAGCATCCAGAAGGACTTCTCCAGCACACAGGGATGCTGCGACCAAGTGATAGAGCTCAGGAATAAGTTTGGCGACATGGAGAGGAAGATTGACTCGGTGTCCGGGGCCTATGACATTTTGAACGGCCGCTTAGACAACGAGCTGGTTGCGATCAAGGAGGATGGAGATATGCTGACCACGGAAGAGAAAATCAAACTCCTGATGGGAGACCTGGAGAGCAGGATGAACAGCACTTTGGAGAAGACAGAGAGTCACTGCGCCACtgtggacaatgacctgaaggaATATTTCCAGAGGGAACTTAGCGACATGAGACACACATTAATCGACCAGTTTGATGAGGATGGGAGCAAGATCTCCACCCTGCAGATTGACATTGGTGACCTGAGGGACTCAGTTCTGGAGAACAAGGATCGGCTTGGAAGACTGGAAAATCTCACCTCCCTTTTGAATGACAAGCTGGCTTCGGCAGTGAGCAGGTGTGAGGAGAAGTGTACCACCGGCCAAGGCTCAGTAACTGGAGATGAGGCAATGGACGCTGTCAAGACGCTACAGTGGACGGTCATTGAGAACAAGGGCCAAATCCGTATATTCGACGACAAGATTAGGGACCTCTCAATGTCAGGGGATTCAATGTTTGAAAAAGTAGTGGGGATCAGCCACGATATTCGCAAAATAAAGGCCCTGACAGGAGAGAACGGGGAACACTTCAACAGGATAGTCAATGACATTGAAAATCTGGGGAAGACGCTGGAGACCTCAACGGCCAACTGCGATGTGTGCAGTATGCTCGACGAAGATCTGAGCTCCTTGCGGAACAATACGGATGACACCTTTAACAGATGGAACGCTGAATTCAATGACCTTCGCAACCGGATAGAGTCAGACGAGACCACATGTGCCCAAGTGTGCTCCAACCTGCAGGAGGAAGTGGGGAAACTGAAAGAAGATGTACAGAAGTGCACCGTACAGTGTAAAGTTGACTTAATCAGCCCCACTCCTGGCCATGGTGGTCTTGATCCACAGAAACCGTTAGATGGCCACAGCGTCATTGGGGGCACGTCCAGCATCAAACTGGAGTCTCTTCAGGGGGAGCTTTCTGAGGTCATTCTCACCTTCAGCTCCATTAACGACACCCTCAAGGGCCTGGAGCACACAGTGCAGAAACATGACAGCGTGATCTACGACTTGGGCAACACCAAGGACAAGATCATCTCAGAGATTGACAAGATCCAGCAGGAGCTGAGTGAGCACATAGAGGACAGCAAGAACCGCTTCGATCACGTGGGCAAGGAGATCCACCGCTTTGGCAGCAACTTCATGGTGGAGATGGGCGACTGCAAGCAGTCCTCCGACGGCCTGGCAAAGAGGATTGACAAGATGGAGAACGTCTGCGGGAGGCTGGACTCCGTCTCTGACAGCCTGCGGAGGATCAAGGAGGGTCTGAACAAGCACGTGTCCAGCCTGTGGAACTGCGTCAATGGGCTGAACTCCACTGTCATTTCTCACCGGTCTATCCTCGACACCCTTCGGAACACAGAGCTGGATGGGATCCATCACAGGATCAAAATCCTCAACTCCTCCATGCTCTACATATTCAACGAGTTCCACAACTTCACAAGCCAGGACTTTATTGGTCTCCCTGGTCCACCTGGtccccagggagagagaggcctACAGGGGCCTTCAGGACCCCAAGGACCGCCAGGCAGAGATGGGACCCAGGGCAGACAGGGGCTGGAAGGACCACAAGGGCCCCCAGgcTACCCAGGTGAAAAAGGTCTCCCCGGTATGGATGCCAGTGTTCCTCAAGTGTCTTTCTCTGCTGGGTTGACCAATCCCCAGGTTAATCCCGGGACCATCATTTTCGATAAGATCCTTGTGAATGATGGAGATTCCTACAATCCTGCTACAGGAATCTTTACGGCGCCATACGATGGGCGCTATTTCTTCAGTTGCATCTTGACCGGCCACAAGAACGAGAAGATCGAAGCTGTGCTCTCCATGTCCAACTATGGCATTGCGAGAGTGGACTCCGCCGGCTACCAGCCAGAGGGCCTAGAGAACAAACCTGTGGCAGAGAATAAGCCCACCCCAGGCTCCCTGGCCGTCTTCAACATCATCCTTCCTCTGCAGAAGGATGACACTGTGTGCGTCGACCTGGTCATGGGCAAGCTGGCCCACTCGGGGGAGCCGCTCACGATCTTCAGTGGCATGCTCTTGTATGACGGCATTTAAAATCCAATCCACCTGACTGGGgatatttcatttgaatgagACACAAGGGGGTAATAAAAGAGCTGGCGATTAACCATGTTCATCCTCAACAAAAGAAGACACTGaatggttgtttttatttttatttttatttttgatatatatatattttttaatccgATTGATGGTTTAAGACCTGTTTAAGACGTGGGGGGGAGAAAGTGATGTATTAACAACTGAACTCTACCTGGATACGCTAGGAAATGCTTGTgggatccccccccccccccccccccaattcaGACAAAGGTGTGAGAGGAATGCTACTGCAGTCATGATCTATAACACGCACTATTGGCAATGAATTATGAATAATCTTCCATTTGCCAAAGCTGGCCTCCTGGCCGTGGGCACCTCACAGTAACGCTCTGTGATGTAGCAGTAAGGTAGTAACCAGGTGCAGTAAGGCAGTAACCAGGAATGAAGAAGCGTTTCTGTCTtgcaggtaaaataaatatatatatgctgagACGATTCAATTTTTTGGGATAATGTCATGTCTGTGTGCCCCTCTGTGCCTCAAGACCCTCACTCCGAATCTGATGATCGCAGAGAGATTGGAAAGCCATATAATCTTGCCTTTACCATGCCTTGCCTTTCACTGTACTGTTATCCTTTGTAAACCGTCGAACCAGCATATTTCTCAGTACCAGTGGTCTCCCACCACTTACTAGAGGAATTTTGATCAGGGGAGAAAATCCATGAGAATCCTCAACAACCTTTGCATTCTGGTTGAGATTACTGATCTGGACAACAAAGGAATCTAGTTCATTTTGATCCAATAAAAGCTTAGAGCTTAGAGTCTGATACTGTAATACAGGCTACTGTATGGGACGACCAGTCCTGTGATTCCTTACCCGATTGTTCTGAACATGATGGGATGGTGTTTATTTGTCGTTATTTGTTATGCAGAGGTTATGCTCGATTTAAAGATTTCatgtatttccatttaaatgcaattgtaAACCCCCATCCTGTCTCAAAATATCCCCGATTGAGCCACAAGATCTATTGTGTCTCTTATGATCCATTCCAGAAACAATGACCTAGTTTGATTGTGCCTCTGTAGTAAGTCACTACTGCTCGTCCCAGCTGGTAGTCTTACCTTGGAGATGCAATTTCCCACTCTCCTTTATACAAGATAAAGTTTACTACTAAATGCAgactttttatataaaaagagGCATAGGAAACTATTCAgtattttctaaaatgtgtaaCTGTCCCCCAGTCTGTTGCCTTTTACAAACAGTAGGTAACTATTACGATGCTGTGGTAAAAACATCCTTTTGAATGTACTTGCAATTACACCTTTAagctttaatgaaaacaaatactaaaagcATTCAACAGACGCGCACTGAAAGTTTGCACTACTGTTGAACATCTCTCAACCGTTTCAGTAATTAAGAGCTTAACCCCTCTTAATGATGTTTAACTAATTGCAATGTCACAACTTGAGTGATTACATCTGAAGGAAACTGACAGCTTTGACCTGCACTCTCACTCTCCTCCTGACAGATTCTATCCCTAACAGCGAAGTGGATAAGACCTTCTGATGGAAACTGTCGCCATTTAGTCAGTAGTGTTTTGTTTACACACAAGAGGAGAGCATCAATGGGTCAAAAGTAACATAAAGACACGGCTAATTAAATTCCGCCAAAGAAACTGAAACGACGCAAAACTAAAGAAAACCAAAGATTAACAACCTGTACTGGTGCTTTAATAAATCCTTCTATTTaatccagtttttttttatttatttcacattaataGTGGTGTTTTCTCCTTGGCAGGGAAACAATACATGAAAATTTAAGCAACACTTTgtataagaaaagaaaaaaaatatttagtttttttgtaccTTTAGTACGCAATAAAAGTTGAGTTATTTGTAAGGCAGAGGGGTGTATTTCCCTTAGAGTAAGTCATTATGTTATTTACCACATggattaaatgaatacatattcgGCAAGCCTGATATTCTTAACCTCCACATATACCACTTGTTGTCCACTTGTTATTTCCACCCAGTGGAAACTTGCCACCAAGCATTGGTTTTGTAACTTGTGGTTGGCAGATGAGTTGCATTTTTCCACAAAATTCTTGGTACATTCCCTGTAAGTTTTATCCAGGCTTAGTCACTGCGACATCATCATATTTTTTGATATTAGAACCATCTGTGTCCAATTAAAATTGAATGATGATACATTGGAGGTCATTAACGTCTTACATGGTGCATAGTACAATTGCAAGAAAAAGGTtgataatagtaaaataataagtcatttcaatatttgttgCAACTTTGCAGCACTGTGTTGGTTCATGACAGTGTTTGTACTGTGCTAACTTACACAATTTTATTAccaaaaagcaacaaaaaaggaaaactttttagtttttcctacTGGTGAAATCAAACATGGCTGTACATTTCTATGATTTTTTTCTGATATCTCACAATGATGTGTTATCTCCATGTTTATCTGGCAACACGTGTGGTTCaaataaagatatttaattttacacacTTTTTA

Function

GO: NA

KEGG:

id description
K24246 EMILIN; emilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003727 True 5681 mRNA 0.47 7 16415450 16427708

Neighbor

gene id symbol gene type direction distance location
AMCG00003719 NA coding upstream 126748 16287662 ~ 16288702 (+)
AMCG00003720 mcm3 coding upstream 149752 16258454 ~ 16265698 (+)
AMCG00003718 NA coding upstream 205173 16207847 ~ 16210277 (+)
AMCG00003715 elp3,LOC107696156,LOC107698368,LOC107599080 coding upstream 254368 16136846 ~ 16161082 (+)
AMCG00003713 NA coding upstream 336135 16071552 ~ 16079315 (+)
AMCG00003730 snap25,snap25a,LOC107698362,LOC107719097,LOC102796069,LOC103398514,LOC107599071 coding downstream 90398 16518106 ~ 16522586 (+)
AMCG00003729 NA coding downstream 119364 16547072 ~ 16569703 (+)
AMCG00003733 kif28p coding downstream 148680 16576388 ~ 16589499 (+)
AMCG00003737 NA coding downstream 224126 16651834 ~ 16660947 (+)
AMCG00003738 NA coding downstream 265862 16693570 ~ 16699348 (+)
G2755 NA non-coding upstream 183952 16229935 ~ 16231498 (+)
G2721 NA non-coding upstream 329458 16085140 ~ 16085992 (+)
G2719 NA non-coding upstream 330584 16081182 ~ 16084866 (+)
G2698 NA non-coding upstream 382515 16032708 ~ 16032935 (+)
G2681 NA non-coding upstream 510630 15904483 ~ 15904820 (+)
G2797 NA non-coding downstream 1326 16429034 ~ 16430555 (+)
G2833 NA non-coding downstream 165556 16593264 ~ 16597369 (+)
G2836 NA non-coding downstream 171350 16599058 ~ 16599329 (+)
G2861 NA non-coding downstream 440591 16868299 ~ 16934020 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding downstream 780327 17208035 ~ 17210041 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 375810 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 1097222 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 1548692 14851752 ~ 14866758 (+)
G2440 NA other upstream 1995718 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 3208611 13155060 ~ 13206839 (+)
AMCG00003744 NA other downstream 604862 17032570 ~ 17042594 (+)
G3047 NA other downstream 1254109 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 1704211 18131919 ~ 18142633 (+)
G3108 NA other downstream 1718952 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 2844257 19271965 ~ 19397686 (+)

Expression


Co-expression Network