AMCG00003730 (snap25,snap25a,LOC107698362,LOC107719097,LOC102796069,LOC103398514,LOC107599071)


Basic Information

Item Value
gene id AMCG00003730
gene name snap25,snap25a,LOC107698362,LOC107719097,LOC102796069,LOC103398514,LOC107599071
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16518106 ~ 16522586 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003730
ATGTACATCATTTCTAGATGTACGGCCACCTACCCCACCAAACTCAAGTCTAGCGATGCTTACAAGAAGGCTTGGGGAAACAACCAGGATGGCGTAGTAGCCAGCCAGCCTGCCCGTGTTGTGGATGAGCGTGAACAGATGGCCATCAGCGGAGGATTCATCCGCAGGGTAACAAACGATGCCCGGGAAAATGAGATGGATGAGAATCTGGAGCAGGTCGGTGGCATCATTGGAAACCTGCGCCACATGGCCCTGGACATGGGCAACGAGATCGACACACAGAATCGCCAAATCGACAGGATCATGGAGAAGGCCGACTCCAACAAAACCAGGATTGACGAAGCCAACCAGCGCGCGACAAAGATGCTCGGCAGTGGCTAAACAACGCAAGGAAGTGCTTTTACCCCCTGTGCTGCTTACTAAGCAGTGCAAACTTGCTTTTATCATGGCATTTACCTACTAGGtttgcacacatgcacatatcagccccccttctccctccccATTGTAAATGTAGTTCTGTGCAGTTCGTTCGCTTTTTAATGATAGTCCTTGTAACTTTCTTTTCTAGGTATCTTTCTTTCCAAAGGTTGTATATAGTGCTGATTTGATGGCTCTAGCTCACTAGTGAAGTTTTCGTTCtccctttttttaaaatatatacatatacataaatatatatatatatatatatatatatatatatatatgtatatctttgCTGGATGAAAACAATGTAGGAATGCTATAcaaactgttttccttttcagtatttcagtaaaACTGTGTAATTCCATCTTGCTACTGCCGTGCTCCTCTTTTTGATGttgtaatgaaacaaaaaagactaaacaaaattCAAAGCATTTACGGTTGCTGTCCTtggttatatttaattttttactcATCCGCCATTATAAGTTCATGTTTAGACACCTTGCAGCTAGACTATGTAACTGTAATAGGCATTGCACTTACAAGTGATGTGATTTGTGCATTATGCATGACGAATACTAGATCTTAGAATcttctaaataaaatgaaaaaaataatcaaaaaataaaaaaagaacgtTACATGGCAGTAGCAAATCGACAAAAGCATGCTCAGTATTAGGACACAGTTGAGAGTACCTTATTCCTGGAGGGTACAGGAGTGTCACAGTTTCTGTCAATAAACTGTGACCATCgttgtaaaataaaaggaagaaatatataaacagacaaaaaaacacaatatggctgtagcacaaatacaaaaaaatgaccTGTTTTCTTAATGAATATGCAGTTCGATATTGAATAAATGCTGAAGGGCGTGGGACTGGTTGTGTACTGTAATATAAGGTTTGATGCTCTTTATGATGAAAAAAGAGactgcaatacaaaataaatgaataaataaatgaaaaaatgaaaaaaaaaatgaaaacacgtGAAGAGGCACATATTtctgaaaaacttttttaaGAAGACCGATATCTTGTTAGTTCTGCTCTCCCCTTGTGGTTTGTtaccagttaaaaaaatatctttgtTGCTTCTGTACCTAGAGCTATGCACACCAAATCGCTAAAATGTGGAGTAgttaaacagacaaacaaaataccTTAACTGAATGATACATAGGTAAAACTGTGAGATAAATGTCCTCGAAGCATGTAATATTAAAACTCCTTCTGTCTCCTGT

Function

symbol description
snap25a Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Acts upstream of or within locomotory behavior and mitotic cytokinesis. Located in plasma membrane. Is expressed in head; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in Down syndrome and congenital myasthenic syndrome 18. Orthologous to human SNAP25 (synaptosome associated protein 25).
snap25 Enables syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly; synaptic vesicle fusion to presynaptic active zone membrane; and synaptic vesicle priming. Predicted to act upstream of or within several processes, including associative learning; neurotransmitter secretion; and regulation of synaptic plasticity. Located in cytoplasm and cytoskeleton. Part of SNARE complex. Colocalizes with BLOC-1 complex and vesicle. Implicated in Down syndrome and congenital myasthenic syndrome 18.

NR:

description
PREDICTED: synaptosomal-associated protein 25 isoform X2

GO:

id name namespace
GO:0000281 mitotic cytokinesis biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0030054 cell junction cellular_component
GO:0031201 SNARE complex cellular_component

KEGG:

id description
K18211 SNAP25; synaptosomal-associated protein 25

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003730 True 1689 mRNA 0.38 4 16518106 16522586

Neighbor

gene id symbol gene type direction distance location
AMCG00003727 NA coding upstream 90398 16415450 ~ 16427708 (+)
AMCG00003719 NA coding upstream 229404 16287662 ~ 16288702 (+)
AMCG00003720 mcm3 coding upstream 252408 16258454 ~ 16265698 (+)
AMCG00003718 NA coding upstream 307829 16207847 ~ 16210277 (+)
AMCG00003715 elp3,LOC107696156,LOC107698368,LOC107599080 coding upstream 357024 16136846 ~ 16161082 (+)
AMCG00003729 NA coding downstream 24486 16547072 ~ 16569703 (+)
AMCG00003733 kif28p coding downstream 53802 16576388 ~ 16589499 (+)
AMCG00003737 NA coding downstream 129248 16651834 ~ 16660947 (+)
AMCG00003738 NA coding downstream 170984 16693570 ~ 16699348 (+)
AMCG00003739 NA coding downstream 325208 16847794 ~ 16850839 (+)
G2797 NA non-coding upstream 87551 16429034 ~ 16430555 (+)
G2755 NA non-coding upstream 286608 16229935 ~ 16231498 (+)
G2721 NA non-coding upstream 432114 16085140 ~ 16085992 (+)
G2719 NA non-coding upstream 433240 16081182 ~ 16084866 (+)
G2698 NA non-coding upstream 485171 16032708 ~ 16032935 (+)
G2833 NA non-coding downstream 70678 16593264 ~ 16597369 (+)
G2836 NA non-coding downstream 76472 16599058 ~ 16599329 (+)
G2861 NA non-coding downstream 345713 16868299 ~ 16934020 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding downstream 685449 17208035 ~ 17210041 (+)
G2967 NA non-coding downstream 731680 17254266 ~ 17256450 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 478466 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 1199878 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 1651348 14851752 ~ 14866758 (+)
G2440 NA other upstream 2098374 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 3311267 13155060 ~ 13206839 (+)
AMCG00003744 NA other downstream 509984 17032570 ~ 17042594 (+)
G3047 NA other downstream 1159231 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 1609333 18131919 ~ 18142633 (+)
G3108 NA other downstream 1624074 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 2749379 19271965 ~ 19397686 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_10183659_10190907 SNAP25, SNAP25.S, SNAP25A, SN25A coding CI01000325 null 10183659 ~ 10191608 (+)
eurasian perch (Perca fluviatilis) G183317 snap25,snap25a,LOC107719097,LOC102796069,LOC107698362,LOC107599071 non-coding NC_053129.1 CM020926.1 9829876 ~ 9846858 (-)