AMCG00003734


Basic Information

Item Value
gene id AMCG00003734
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16607410 ~ 16628401 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003734
AGCTCTGCGTTCTCCACAGCCCCCTGCCCACATGGACGAAGAGGCGACACAGAGGGTTGAGACAGCGGGGCAGGTCAAAGGCCGAGTGGAACCCCAGAACAACGTGGGTCACAGACCTCGAGACACGGCCGCTCAGCCCGCCGACGAGAACAAGAACCGGCTGGAGGTGTCGCCGACGCAGTGCCAACGCTCCCAGCAGGACACGGTCAACAACAACGAGGAGCCCATCACCACCACTGCCAgtaacatcaacaacaacaggaagGCCTCCTCCACCCCCAGTCCTCAGCCTGCCACCAGCCCCGTGACGCCAGCCCAGCGGGGCGCCGACACAAAGGCCAAAGGCTCAGGAGGCTTCCCTAAGAGCTCCGAGTGTCCATCCCCGGGGAGCATCTCTGACAGCCCTGAGGGCCTCATCCCTGAGAAAGGCGTCCCGTGCATCTCCTCGCGTCCACAGGAGAAGGGACAGTGTGGCCCACTGCAGGCCCTGCTCTCCTCCCTGCAGGGCCTGGGCACAGAGAGCGACTACCTGCTGCCCAGTAGCCTCCAtcagATAGCCGAGGCTTATTTCCATGAAGAAGACTATGAAAAGGCTGTGCGTTTCATCCAGCTGGAGAGATTGTATCATGAGCAGCTTCTGGCCAATCTGTCAGCCGTTCAGAAGCAGTGGGAATCCAAACGGAATTCAACGGCCTCTCTGGTGAGGCAGTCTTTGGGGAAGGCCCTCCTTGGGGATTTAAGAGAAGAGGACCTTGCCACTCTGACACAGCTGTGCACGACACACCAGAGGCCTGCTCTCGTCATCCCAAAGtCTGTTGCTGTTGACAATGCGTTGAAAAACAGCTTGATCACCAAGAAGCTCCCTGGAGAAAACAAGAAGCCCAACTCCAGCCTTCCTGTATGCGGCGCAGATAGCATCACGGCATCAGAGCAGCTGGGCATGTCCGAAGCAGTCCCCTTCCCCATCCCTGCCCCTGGCTCGTCCGGGGGAAGCCTGGGAGAGGAGGCGGGTGTTTCCCTGGCCGGCCAGCAGATGGGGCTGCAGGACCGAGTTGTCTCCACTCAATGGAGCCCCTCCGCCCCGATTGGCCAGCTGTGCTTTGACTCTTTGCCTGCTGGGAGCGTTGTGGGGGAGGCCGGCTCTTTGCATCCAGATGCTTcagccacagcagcagcagcagcagcagctgagcAGAGATCCCCTGAAGAAGGTCTGACGGCAGCACCGGTCTCAGGAGAGCgacaggaggagggaggggaggggaaggaggaggaggattcAACAGGGCAGGAGGACTCTGGGCCAGGCCTGCCTCTCCCTGTGGCTGCGCCCTCTCCCCCGGCATGTGAGCTCTCGCAGACCCGCAGCAGGCAGGAGCAGACCGGAGATGGGGCTCCGAGAGTAGAGACTGAAGGCCCGGGTGCTCCCTCTCCTTCTTCACTGGACTCCAGGGACCCCGGGGACTGCGAGGCAGGGATTCAGGCTGCCCCTCTTCAGCAGCCCTTGGAaatgagcgagagagaggtCACAGAGGAGGGGGGACTCACAGTGGAGATCCCCGACACAGAGCAGAACATCAGGTgtggagaagaggaggaggaggaggaggaggaggaggtggaggaggaggagggtgccCCGGGGGAATCCCCAGCCGCAGAGCAGGGGACCCCCAGCGCTGCAGAGGAGCCCTCGGctgagctggaggaggaggctgtGGGGCTGGGAGACTGGGTTCCTTCCCTGGATGACCTGGCCAAGCGCATCCAGATCGAAGAGTTCACTCCCGCAGAAGGCCTAGTGTCCATCCTGAAACGACGGAGGTCTCTGGACGGAGCCGAACAGCCCCCGCCACCCCCCAAGCAACCGTCCAAGCGCAAAGTGAGGTTCAGAGAGCCTGAAGACGGTCTCGATCAGGAAGAGGTGGGTGGCGACtcctgcctgctgctgctgctgctgtgcgtGGCCACGGTGGTGATCAGCATGGGCGGCACGGCGCTGTACTGCGCCCTGGGAGACGTGGAGTCCACCGTGTGCACAGACTTCTCACACAACATGGACTTCTACTTCAGCCAGATGCAGCACGGAGTGAACGAGCTCAAGCACTGGCTGTCCCCCGGCTCCTAGCGCGGCTCGGGGTGCGGGGAGGCGGCGGaggaggaagtgtgtgtgtttttcgcGTGGGGGAAAGGGGTCTGTTCTCGGTCTTGTCTGTGGctctttctctctgccccccaccccccatcccccttccTGGTGAGAATGGAGATGCCGTGACTGGCACAGATGCTGGCGTCTCGCTCACCGTCCAGCGTCTCCGGACCCGAGGGAGTCCAAATCCCGGCGTGTGTCGTACTAGCAACAGACCCACAAGTTTGATCCGTCTTATTGGCCACGGATCAGCGCCGGGGACTGCAGGGACACGACTGCCATGGTGGAGCTGAGCTGGGCAGAGACGGCCATTCACTTTCAGCGCCATTGTTCACATTTGACAAAGGCAAGCGCTGTTGAAAATGGGCAGAGTGGAGACACACTGGACCCACATGCGTGCTGGGAGCGTTTCCACACAGGCCgggacaaaaaaaacagccacatgGCTAAAGCCGGGTTTCACGCATCAATGAAAAgaagcagaacagaaaaaaggaatatattattagtgtttagtttaaaacattaactttttaacagggaaaaactttttttttttttttaatcttttttttatcttagGTCTCTTCAAGATGTGTGTTCCTCTCAGGAGGTTGATGGTGGTTGACTAAATGGCATTATCCTTCTTTTGAATTAAGTAGCCTCTTAAGTAGCAGTGGTCTGCAAGGCCGGAAGGATCAGAAGACTCTTTTACTCCACAGAGTGCACTAAGTGATTATTTTCAGCACGTCGGAGCAGAAAAGCAATATGTTTAAacgatttgtattttttttaagtctgtgGTCAGCTAGGAAATAGAATGAGATGAAATAATGGCAAAAGAATACCAAATGCTCAGGCTAACAagtcttattattgttattcaaatTACTGTAGTTACCTCTCGTATTGGGGAGCtgtcttaattttaattaggCTTCTTTGACACTGATGGAAGTAGactaacagattttttttcttttcagggtaAATAACACAGAAAATAGTCTTTTTGGCATAGAAACACAATCTGATCACAAACAAAAAGGCTCTGTCCGTAGCCGggccatacatatatatagagagagaaactttatatatatattttcttttaattcctcTGGCTGGATCAGAGGATTTGTTTCTTCATATTGTGCTGACTgagctatttattttgtgttaagtGTGGTAAGAAACATTGAATTACTTCAGCATCGTTTTTAAATCAGACACTGTATTGGTGTGCATGTGTTCCTTTCTGTACTGTTTGAACTTGATGTGATTACTGTACTTTGGGTTTTGTGTTAACACTTCCAAAACCAACatgataattaatttatttggattGTGCTTACTATTAAGGGGGAGGAAAACAAACGAGAAACATTGCCTGGTCTACAATTTTGACCACTTAAAGATGTCGATTtggaaattgttttaatgtcagCATAACACcaatgattttcatttttggggaaaacttttactttttaagtgTATATCATGTACTGACGGCTTTTGCGTCACCTCGTTTTAATGTATGtccagattttaaaaagaaaaacaattatgaaaaaaaatgttgtattgtaaATGCTGCAAAGGGAACATAAATCAGAAGGTTATCTTAAAAACTTGTGGGCGTTCCtttatttgaatgattttatttaCCAGAAGTATCAATTTATTAATCTCTTGATATTGCTTCCTTAGACATGCAACCAGAAGTCTTGCAGATTTCAGAGCTGTGGGTgggtgtctttttatttttgctgagtCATAGTTGGAcatcttgttcttgttttgattGGGTGGTGGTAAGACTGGAACAAAGAAGCGACACCAAACACCATCTGAGCAGTTTCCAGGAATAAATCACCACTGCATCTGAAGACTCTCCTCAGTAAATGAGTTCAGCTAACATCAGAGCTGAGACAATGGACTCTTGGTTAGAGTTCTATACAGAGGAATATAAAGTTCTGTATTAGATGTGTGATTTTCTCATAGGTTCTGAGCACAGACTGTAGGACTGAAACTATACTGTGTGGCCCAGC
>TU3480
ATCCCCAGCCGCAGAGCAGGGGACCCCCAGCGCTGCAGAGGAGCCCTCGGctgagctggaggaggaggctgtGGGGCTGGGAGACTGGGTTCCTTCCCTGGATGACCTGGCCAAGCGCATCCAGATCGAAGAGTTCACTCCCGCAGAAGGCCTAGTGTCCATCCTGAAACGACGGAGGTCTCTGGACGGAGCCGAACAGCCCCCGCCACCCCCCAAGCAACCGTCCAAGCGCAAAGTGAGGTTCAGAGAGCCTGAAGACGGTCTCGATCAGGAAGAGGTGGGTGGCGACtcctgcctgctgctgctgctgctgtgcgtGGCCACGGTGGTGATCAGCATGGGCGGCACGGCGCTGTACTGCGCCCTGGGAGACGTGGAGTCCACCGTGTGCACAGACTTCTCACACAACATGGACTTCTACTTCAGCCAGATGCAGCACGGAGTGAACGAGCTCAAGCACTGGCTGTCCCCCGGCTCCTAGCGCGGCTCGGGGTGCGGGGAGGCGGCGGaggaggaagtgtgtgtgtttttcgcGTGGGGGAAAGGGGTCTGTTCTCGGTCTTGTCTGTGGctctttctctctgccccccaccccccatcccccttccTGGTGAGAATGGAGATGCCGTGACTGGCACAGATGCTGGCGTCTCGCTCACCGTCCAGCGTCTCCGGACCCGAGGGAGTCCAAATCCCGGCGTGTGTCGTACTAGCAACAGACCCACAAGTTTGATCCGTCTTATTGGCCACGGATCAGCGCCGGGGACTGCAGGGACACGACTGCCATGGTGGAGCTGAGCTGGGCAGAGACGGCCATTCACTTTCAGCGCCATTGTTCACATTTGACAAAGGCAAGCGCTGTTGAAAATGGGCAGAGTGGAGACACACTGGACCCACATGCGTGCTGGGAGCGTTTCCACACAGGCCgggacaaaaaaaacagccacatgGCTAAAGCCGGGTTTCACGCATCAATGAAAAgaagcagaacagaaaaaaggaatatattattagtgtttagtttaaaacattaactttttaacagggaaaaactttttttttttttttaatcttttttttatcttagGTCTCTTCAAGATGTGTGTTCCTCTCAGGAGGTTGATGGTGGTTGACTAAATGGCATTATCCTTCTTTTGAATTAAGTAGCCTCTTAAGTAGCAGTGGTCTGCAAGGCCGGAAGGATCAGAAGACTCTTTTACTCCACAGAGTGCACTAAGTGATTATTTTCAGCACGTCGGAGCAGAAAAGCAATATGTTTAAacgatttgtattttttttaagtctgtgGTCAGCTAGGAAATAGAATGAGATGAAATAATGGCAAAAGAATACCAAATGCTCAGGCTAACAagtcttattattgttattcaaatTACTGTAGTTACCTCTCGTATTGGGGAGCtgtcttaattttaattaggCTTCTTTGACACTGATGGAAGTAGactaacagattttttttcttttcagggtaAATAACACAGAAAATAGTCTTTTTGGCATAGAAACACAATCTGATCACAAACAAAAAGGCTCTGTCCGTAGCCGggccatacatatatatagagagagaaactttatatatatattttcttttaattcctcTGGCTGGATCAGAGGATTTGTTTCTTCATATTGTGCTGACTgagctatttattttgtgttaagtGTGGTAAGAAACATTGAATTACTTCAGCATCGTTTTTAAATCAGACACTGTATTGGTGTGCATGTGTTCCTTTCTGTACTGTTTGAACTTGATGTGATTACTGTACTTTGGGTTTTGTGTTAACACTTCCAAAACCAACatgataattaatttatttggattGTGCTTACTATTAAGGGGGAGGAAAACAAACGAGAAACATTGCCTGGTCTACAATTTTGACCACTTAAAGATGTCGATTtggaaattgttttaatgtcagCATAACACcaatgattttcatttttggggaaaacttttactttttaagtgTATATCATGTACTGACGGCTTTTGCGTCACCTCGTTTTAATGTATGtccagattttaaaaagaaaaacaattatgaaaaaaaatgttgtattgtaaATGCTGCAAAGGGAACATAAATCAGAAGGTTAT

Function

GO: NA

KEGG:

id description
K17581 CNST; consortin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003734 True 4206 mRNA 0.51 10 16607410 16628401
TU3480 False 2131 lncRNA 0.46 3 16607838 16616239

Neighbor

gene id symbol gene type direction distance location
AMCG00003736 sccpdh,LOC105911215 coding downstream 10084 16593436 ~ 16597326 (-)
AMCG00003732 NA coding downstream 30823 16570530 ~ 16576587 (-)
AMCG00003731 NA coding downstream 63889 16535239 ~ 16543521 (-)
AMCG00003728 NA coding downstream 164884 16429027 ~ 16442526 (-)
AMCG00003725 gpn1,LOC107725955,LOC107729295,LOC107682285 coding downstream 287977 16308233 ~ 16319433 (-)
AMCG00003735 NA coding upstream 15959 16644360 ~ 16651502 (-)
AMCG00003741 NA coding upstream 251635 16880036 ~ 16881122 (-)
AMCG00003740 kif26b,kif26ba,LOC107682227,LOC107693166 coding upstream 255571 16883972 ~ 16892879 (-)
AMCG00003747 kif26b,LOC102197193,LOC107097817 coding upstream 364718 16993119 ~ 16994022 (-)
AMCG00003748 NA coding upstream 370379 16998780 ~ 17013774 (-)
G2834 NA non-coding downstream 19117 16588069 ~ 16588293 (-)
G2832 NA non-coding downstream 21144 16586062 ~ 16586266 (-)
G2765 NA non-coding downstream 356927 16247935 ~ 16250483 (-)
G2722 NA non-coding downstream 521415 16085115 ~ 16085995 (-)
G2720 NA non-coding downstream 522544 16079399 ~ 16084866 (-)
G2903 NA non-coding upstream 368389 16996790 ~ 16997604 (-)
G2902 NA non-coding upstream 413036 17041437 ~ 17042549 (-)
G2973 NA non-coding upstream 625870 17254271 ~ 17254765 (-)
G2972 NA non-coding upstream 629536 17257937 ~ 17259543 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding upstream 1307439 17935840 ~ 17940712 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 1015680 15515673 ~ 15591730 (-)
G2500 NA other downstream 1796079 14810786 ~ 14811331 (-)
G2373 esrrg other downstream 2594389 14009458 ~ 14013021 (-)
AMCG00003667 NA other downstream 2875371 13664743 ~ 13732039 (-)
AMCG00003652 parp1,xdh,LOC102777090,LOC107603072,LOC104966294 other downstream 3490750 13071796 ~ 13116660 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other upstream 239931 16868332 ~ 16871475 (-)
AMCG00003751 NA other upstream 508847 17137248 ~ 17140382 (-)
G3181 NA other upstream 1314176 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 1506978 18135379 ~ 18142681 (-)
AMCG00003782 ctsb other upstream 1518259 18146660 ~ 18152381 (-)

Expression


Co-expression Network