AMCG00003735


Basic Information

Item Value
gene id AMCG00003735
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16644360 ~ 16651502 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003735
AACGCAGGCATGGGCCGGTGTTTTCTGTGAGCAGGGGTCGGTGATAACGACAGGCACGACCGAGTACAGAGGAATCCTGCTGCCATGTCTACGCCCTGTCATGGGTCCCGGCTGCTGGTGCTGGCCGTGCGGACCGCCGGCTGCCTGATACGTGGGAGACGGGCCCCGACGGCTCCGCACCGGGCACGGGCGTACTCCCTGGACACGGCTGCTCTCGGCGGGGGAGCACTGAAGCAGGCGGCCCATCCGGCATCCAAACCCGAACCTCTCTCCTCCCGCCTCGGCAGTGCCCAGAGGAACCTGTCCGCTATCGCCTGCTCCCTGCAGGGCCAGTCGAGGCCCCTGTGCAGATATGACTTCCTAGACTTGGGGGAAGTGGAGGAGCACACTATAAAGGCACAGGCCTGCAAGACTATTCGAAGGTTCATCGTGGACCCACGGCTGGCCAGGCTGGTGGCCGACGAGCTGGAGCACGACCTCGCGGACAGCAGGGCGGTCATCTTTGAGTGCAACCCCGGTCCTGGAGTCTTAACTCGAACTTTGCTTAACTCTGGAGCACAGAGAATAGTTGCCCTTGAAAGTGATAAAGCCTTCCTTCCAGATCTACAGGTCCTGGAGAACAGTCTGGACGGGCAGCTGGAAGTGGTTCACTGCGACTTCTTCAAACTCGATCCCATTGGACAGGGAACCATGAGGCCTCCAGCCATGTATTCAGAGAAGCTCTTCAACAATCTGGGGATCTCCGAGGTCCCCTGGACTGAAGATGTGCCCGTCAAAGTGGTGGGGATTTTCTCGCAGCGGAACGAGAGGAACATGCTGTGGAAGCTCGTCTATGCCCTGTACGAGCGCCTGTCCATCTTCCGCTACGGCAGAGTGGAGCTGCTCATGTTCATCAGCGAGAAGGAATACACGAAACTGGTTTGCAGTCCGGGGGACATGAAGAATTACATGGCTCTAGGCTGTCTGTGGCAGATGGCCTGTGACATCCAGCTTCTGCACAAGGAGCCGTGGTCATCATTTCTCACCACATCCAAGTCCTCTGCGGTACCCAAGAGCATCGTAAGTGTCTCGTCTGTAATGCGTCCGGACCTGTTCTCGGCCACCCTGACGCCCTCCAACACCTCCACGCTGGTCATGATGATCAAACAGTGTCTGGCCAAACGCAAGGCCAAGTTGGCGGACAGGCTGAATTCTTGGAGCCCTGGAAGCGGAGCCAAGTTGCTGAGACAGGTGGACTTGCCAGAAGACATTCTCACCGGACTGGTGTACCCAGAGGAGTACAAGCGTCTCTTCGAGGCGATGGAGCACTCGGAGGAGTTCACGCAGAGCTGGCTGTATGAGGAGATCCTGGAAAACACGCGAAACACAGGCTGTCAGTGACTGCTGCCCGCCTGACATGAGACTCCTGTGGTTCAGGAACTGTAAAATCGATAACACACTGGTGTCCAGTCCTGACCTTTCACTGGTGTGAGCGATACATGTTGAAGGTCGGTCTCGATCAGCTTGCGTTTCCAGCCTCTTCCCTCccatattgcattaaaaaaaaataacatgaccttttgttttcaatgaaaaATGAACCAGACTGCTTTAAATGAACAGCTGCAGAATGTCTTTACAGAGTTACTTTATCTTGTAAATGATTTGCTTGTCTTGTACATAggaatctgaaaataattttattgaataacCTTCCATGGAATTTCTCAAAAAGGACATGGAATGTTCTCAATACATGAactttcatatgtatttttttaagcagaaaAGCGTAATATACTGTTGATGAAACATACCTAACATATTTATTCTTGTCGtcttgtgtttttcaaattctCAGTCTGGTTGCAAGTAAGCCTTGTGAATTATAGAGATGGCTAAGAAAACCCAGTTAATAAGAAACACCAACTTGATATTATCTTCAGTATTTAATGAGGAGTCGCTTCACAttgatgataatattaataaagccTGTTACTGCTCTTTCTTTCCTGTGTGCCCTGTCACAGAGAGGTAGttgaataatcataataaaacattatttatatagtgcctttcatacTTGAGTGAATAGCACTCAaaagaaaggagaggaggccattatTTCGCTTATTCATCTGAATAGTTTGGGCACATGTTTCTTGACGGTTCCTATTGAATCTCTGTGTAGCTTTCTGTCCATACACCTGCAACCTCTTGTGTAAAGACATGCTTACAGAATGGATGCAAACACACGATGCAGTacagatttcacattttgtcaCCTGGGGCTGACTTCTTCTGATTGTTAATTCTTACAGAAATTCTTTACTTAATGGCAAGACAAATGGAATTAAAACCTTCAGAACAATTACATTATAACCAGAGTCACTTAAGACAGGTAACTTTCCACTGCAAGTGTGCAATGGCCTGAATtgattgtgattttcttttcccaTCACTGGTTAAAATATGGAAATGGCTGATATATTAAGTGAACATTCTTCTGAAACATTAGAAACACAGAGTACAGTATCTGTGGGATTAGCTAATTTATCTCCACCTGGGAATTATATTGagttttcatttgaaacttgtcattagaattaaaaaatattttgatgtattgtaagaatttttttttccataaaatgtCCTTTATACACTCAATCTTatgacacaataaataaaagcccGTAGTCTTTTTTAACTCATACTAGTTAtgttgcttgtgctttttttacacatatgattaataattaatgataatCCCATTGACAACAATTGTGGAACCAAAAACCCATTCCTTGCAATCTATTGTTATGGTTGATGTGTgtatacaatattgtattattacctCTCTACACTATCATAACATATTTTTAGCATGGTATACTTTCCAGTGTTTTTACCATGTTTGACCATGGTTTTATCATATTGTAAAATCTTTACTATGATTTTACCACATTTTTACTATTGCTATTACCAATA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031167 rRNA methylation biological_process
GO:0005739 mitochondrion cellular_component
GO:0003712 transcription coregulator activity molecular_function
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity molecular_function

KEGG:

id description
K17653 TFB2M; dimethyladenosine transferase 2, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003735 True 2970 mRNA 0.45 9 16644360 16651502

Neighbor

gene id symbol gene type direction distance location
AMCG00003736 sccpdh,LOC105911215 coding downstream 47034 16593436 ~ 16597326 (-)
AMCG00003732 NA coding downstream 67773 16570530 ~ 16576587 (-)
AMCG00003731 NA coding downstream 100839 16535239 ~ 16543521 (-)
AMCG00003728 NA coding downstream 201834 16429027 ~ 16442526 (-)
AMCG00003725 gpn1,LOC107725955,LOC107729295,LOC107682285 coding downstream 324927 16308233 ~ 16319433 (-)
AMCG00003741 NA coding upstream 228534 16880036 ~ 16881122 (-)
AMCG00003740 kif26b,kif26ba,LOC107682227,LOC107693166 coding upstream 232470 16883972 ~ 16892879 (-)
AMCG00003747 kif26b,LOC102197193,LOC107097817 coding upstream 341617 16993119 ~ 16994022 (-)
AMCG00003748 NA coding upstream 347278 16998780 ~ 17013774 (-)
AMCG00003746 NA coding upstream 392132 17043634 ~ 17047025 (-)
G2834 NA non-coding downstream 56067 16588069 ~ 16588293 (-)
G2832 NA non-coding downstream 58094 16586062 ~ 16586266 (-)
G2765 NA non-coding downstream 393877 16247935 ~ 16250483 (-)
G2722 NA non-coding downstream 558365 16085115 ~ 16085995 (-)
G2720 NA non-coding downstream 559494 16079399 ~ 16084866 (-)
G2903 NA non-coding upstream 345288 16996790 ~ 16997604 (-)
G2902 NA non-coding upstream 389935 17041437 ~ 17042549 (-)
G2973 NA non-coding upstream 602769 17254271 ~ 17254765 (-)
G2972 NA non-coding upstream 606435 17257937 ~ 17259543 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding upstream 1284338 17935840 ~ 17940712 (-)
AMCG00003734 NA other downstream 15959 16607410 ~ 16628401 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 1052630 15515673 ~ 15591730 (-)
G2500 NA other downstream 1833029 14810786 ~ 14811331 (-)
G2373 esrrg other downstream 2631339 14009458 ~ 14013021 (-)
AMCG00003667 NA other downstream 2912321 13664743 ~ 13732039 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other upstream 216830 16868332 ~ 16871475 (-)
AMCG00003751 NA other upstream 485746 17137248 ~ 17140382 (-)
G3181 NA other upstream 1291075 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 1483877 18135379 ~ 18142681 (-)
AMCG00003782 ctsb other upstream 1495158 18146660 ~ 18152381 (-)

Expression


Co-expression Network