AMCG00003744


Basic Information

Item Value
gene id AMCG00003744
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17032570 ~ 17042594 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003744
CATCGCTGAGCTGCGGTTGATAAGTCAAACTGGTACCCTGCGGTATCTCAAAACGTGCATATTTGCAGCAGGCGATCGTTAACCTGTGTTACTATTTAAAGTGCGATTTTGTTTTCTGGCGTCTGCACATGCGCACACGTGTCTCCATCTCCTTGCCAGTGATGGGAGAAGCAGACAGACGCCGAGGGGCAGTTCCTGTTTGAATGACATTGCATTTTCCAGTCCATGTACCATTTGTAACGTCCACatcctcacacacaaacacatccattgTTGTCCTTTCCCTCACTGCCAGTCGGGTTTCTATCATTACACATGTAAAAGCACGTCACAGACATCTGCATTACATACAAAGCTTCCATGACATGATTCAGGCGATCTTATCTtgagtatacatttaaaaccacgCAAATAGGATGTCATATtggtgtatttttcattttaaaggggGGACAACCAATAAATACAGGCTGTGTCAGTTCGGTCAGCATGATGGTGGCGTTGTTGGAGCGCAGATCTGCGGGATTCCAgccatcccattggtggagcagtgcagaactgcggacgtctgcgctacacgaacgccaCCGATATAGTCCGAAGTGAACCGAGCGTACTTCCGCTTTGCTGTCAGTCACTCCTCCGCCCCCCGGTCGTTTCCCACACTGCGCCGGCTGTAACTGGCGGTGCTGCTCGCCTGCTGGCTGCACTGTTGTAGGCAATGGCGGCGGACGGTggaggcggcggcggcggcggctccTCGCTGGTGAGATGCGGCACAGTGGTGTCTGTGGTTGGGCTGCTGCTGGCGCTGTGGTGGCGGTCGCCGGTGCCGGACCCGCTGGACGAGCGGCTGGACGCGGTGCTGTCCTCCCTGCTGAGAGCCGAGCGCAAGGCGGGCGCGGAGAGGGACGTGCACCGCCGCAGAGTGGCCATCGGTTTCGGGGGCTGTGTGGACATCATCGTGGATGGCGTCTCGCTGCTCAACAAGGTGGGCATCCGGCCCAGCGGTAGCCCCCTGCACCACGACTACATCGAGAGCATTGAGCAGATGTCTCAGAGCTTTGCCTACTTCTTCTCCCCCGGTGCTGCCTCAGAGCGCTTCGTGGCCAATGACACTCTGTTCAGAGAGCTGGTGGAGGCGTCCAGGGAGCTGCCGGGCAACCGCTGGGCGGTGGGGGGCAACGCGGCCGTCATGGCCAACAGGCTGGCACAGGAAGGCTGTGACGTTCTCCTGGGGGGCAGCTTCAGCCCGGATTTCAAGGACGTCCTGTCGCCCGGCATTACAGTGGCAGGAAACACCGTGGAGGAGCCCGATATCCACCTGATACTAGAGTATCCCTCTGGGGCTCAGTGGGGGGAGTACACGGCAAGGAGAGCCAACAGGTACATTGTCCACAGCGATGACCACAACCCCTTCCTGGACTCCATGGAGGACTTTGAGGAGCAGCTGCAGGACTTCAGACCTGACCTGCTGGTGGTGGGAGGCCTACAGATGATGGACAACTATCCCTTTAAAGAGGGGGAGAGGGAGGCACGTCTGCACAGTCTGGGGCGGCTGATGGAGGCAGCAGGGCAGGAGACAAGTGTGCACTTCGAGATGGCCTCCTTCGTGGACCGGGGTCTGTTGGCGGAGCTGCTGGGGAAAGTGGTGCCCCAGGCCGACTCACTGGGCATGAACGAGCAGGAGCTGCCCAACCTGCTGAGCCTGCTGAAGGAGGGCAATGTCACGCTTCTCTCGGACCCCAACCCCCGCGTGGCCACCGTGCTGGACCAGATGCGCGAGCTGTACCGCCTGCTGAACGCCGGGCCCAGGGACCGCCGCCTGACCCGCCTGCACGTCCACACGCTGGCATTCCAGGCCATCATCGTGACCCGCGGCTCCTCCTGGAAGAACACCATGTCGGCCACCGCCAAGGCCTCGCTCACCGCAAACCGGCACGTCTGTGGCTCGCCCGACATCAACCCCAGCAAGGCCAAGCTCATCATGGACGACTCCTTCTCCATCAGCCAGCAGGAGGGCAGCCAGCGCATCCCCTTCCTGGAGACCAAGCCCGTGTCCTGCTGGGAGGAGGCCGACTATGAGATCTGCGTGGCGCCCGTGCTGGTGTGCACCGAGGTGTATCAGACCGCAGGGGGAGGGGACAATATATCAGCGGCCGGACTGGTGCTGCAGATAtagcagggggaggggggggcgaGGTGAGTAATACTCAGgcaaaaaaacttttttcctgtttttaattcagtcaaCGAGATCATTCCCACCTCATGTGAATTACcctttattgtttgttttaccttttatttattttggttttggttgCAACTTTTTCCAGATCCAGTGCAATATCAGAGGAGcctatttttttggtttaaagaGTGTGGACTACATCCTGTGTTACTGTGAAACGctccagtgtttgtttttatcaccCTTAGTTTCTTCCTCTCCCATCTGCATTGGTCTTGGGAATTAAAATCCCTTCTCACACGAAAGCAGCTGCTTATTCCGAGAAGCCACTATCAGAGAAGGAACCATGTATGAATTGATCAAGAAAGCTGTGAAACTGCTACATACCTGTCTACATACCACACATGTATGCTTTCAGTgcttgtgtgttgtgctgtcctTGCCTTGCTTCAGTCTGTTTTGCGGGTTCAGTTTAATTATGCATCCCCTAATGAAGACATTGCGTCGCTCTCCTGCAGGCGCAAATGTCTTTCACTACACAGATGTtcatgtttgcttttattttgttttgtttaaattctgGCCATACCAACATTTAAAAGGGACCAACTTTGAAACTTTTTATCCTGGCTGGGAatgttaacataaataaatttgTGATCATCCAAACACCTTCAACTGAGGTTATTCTTGGGGTCTTTCTCGTTGTAAATGGGTGGGGTGGGGCAATCTAGTGGCACAGACCTAGTGGATTTGCAGTGACCTGTTCAGTGCTGGGCAATCAGTGCTCCACTCAGCCTGGTCCTTGGCGCTAGAGTTGCCTGTTATTCGATGCTGCAGTCTGTTCGCAGACCCTTGAATGTTAAAGTAAGATTGATGGGCTGCTCGGTTTGTGTGAACACTGCTTCCCAAAGACGACGATGCAGCTTTAATTTGCCCCCTCTCCCGCAGACTGGTGAAATCATTACAtccatattttttaatggtttcttttcttccttttccatTCCTTATAAATCATGCTAATCTGCGGCTGTCTATTTCATATTCATTGTTctcatttcttttttgtgactgatttaattttttcaggGTTGGTTTTCTAGATCACTCTTTTGGGAACTAATCATTTGTTCAGTGTTGTGCTGGAGATACCATAGAAACATGTAGCAGAACttgaaaaagtgaatatttcacattgaaaaaacaggataatatgaagaaaaaaaatactttgatttaCCCAGAGcaggatttagttttttttttttttttaagaaaaaacacaaaacctcaCTGAAATTTACATTCAGTAAGTGATTGTTCCAGTGGGAGATGGGGTGATTATaagcacacaacacaatactacACCCCAGAAAGGAAATGGAATGTTTAATGCGCCTCCTGTGCCTGGAAGTCTGTTTTACTGTGACAGAGCGAGTGCAGTGCGACAGACAGGAATCTCGGCTCTAAAAGGGAAAAGAGCTTCTCACACAGCAGAATGGGAATATGAAGACCAGGGCTGACCCTGTAGAGCCACAGTGCCTGCTCgttttattaaatgcaaactACTTGTCCTGGAGGAGAGCCGATGTGCGTTCTGTGAATACCGGTCTCCGTTTTCTGGTTTTGGTTCCAGATGAACTCTTGCTCCCATCGACTAATCAAATACACCTTGATGCAACCTTTATTAAATCTAATTAGAGCTCCTGAACAAGACAATTTGTTGTGCAGAAAATCTTATTAAACTCCTCCGTGAGTGCCAGGTTTTAGAGCTGCTCTCATGTAGGGGTGCAGTTCACTGAGCAGGTGTCTGGAATGTGATCAGATGAGCCGGAGAAGAATTTGCCATGTTTACGAGGGGAGTGTTTGAGGCCATGTACTTCCTAAACTTCTCTGTGCATCACTACTTGGTAACCTGTTAAGAGTTGTTTAGACAGCTTTAAGAGAGCGGTAGCAGCTCATTAAACAAGCTGAGGACACAGACTGTTTTTCTGCTTGACGAATGTCTTGCGAAAAACACACACGAAGCAGAAAGAATCTGAAACCCAGGTctgaataataaattataaaagctAGAAAGGAGCTAATTCAGTTCAAGctagttcaattaagggctcAAGGAAAGGAAAGGGAGTGAAAACCAACTCGGAACTAAGGCCGGGAAACCCTTGTAGGCCAGAGACACACACTACACTATCTTAGCTGGATCTGTGTGTGGAATCTGAAGTGTAAATCTGGCTCGGCCACATTTCTGTAACTAAACAGGATTTTGGTTTTCAGCTTCTGTGAACTGGCCACCACCCAAACACCTGGGATTTGAGCTGCAGTGCGGTGTATAGGTTTTGTCCACATTTAATCGTGCATTTTATATGAGATCAAGATCGATGCTCAAACCATACGTGCTGTTtttctagagcaggggttcttAACCTAGGGGTCGTGAGGAACATCTagcagtaaataaaaataacgaTATGACAAATCAAAATAAGTATTGGCAGTTAAATTCCAATTTAGGCCGCTGGTGATTTCAAGGTGGCTGTGAAATTCTGGAAAAGTTACCGATCATCACCTGCTTATGGATCAGAAAACCACAGAGAAGGACTGATGCCCAGATTATTGACACGTAGCTAAAGTCTTGATTACAGTCACTGAGTGCACTGTGGTGGGGGGATCCAGCAGACAAGTTCCTCTAGGGCCAGGGcgagagggggaaaaagtggGGGTTGAGGCAGGTGTGGA
>TU3513
ttttttttttttaagaaaaaacacaaaacctcaCTGAAATTTACATTCAGTAAGTGATTGTTCCAGTGGGAGATGGGGTGATTATaagcacacaacacaatactacACCCCAGAAAGGAAATGGAATGTTTAATGCGCCTCCTGTGCCTGGAAGTCTGTTTTACTGTGACAGAGCGAGTGCAGTGCGACAGACAGGAATCTCGGCTCTAAAAGGGAAAAGAGCTTCTCACACAGCAGAATGGGAATATGAAGACCAGGGCTGACCCTGTAGAGCCACAGTGCCTGCTCgttttattaaatgcaaactACTTGTCCTGGAGGAGAGCCGATGTGCGTTCTGTGAATACCGGTCTCCGTTTTCTGGTTTTGGTTCCAGATGAACTCTTGCTCCCATCGACTAATCAAATACACCTTGATGCAACCTTTATTAAATCTAATTAGAGCTCCTGAACAAGACAATTTGTTGTGCAGAAAATCTTATTAAACTCCTCCGTGAGTGCCAGGTTTTAGAGCTGCTCTCATGTAGGGGTGCAGTTCACTGAGCAGGTGTCTGGAATGTGATCAGATGAGCCGGAGAAGAATTTGCCATGTTTACGAGGGGAGTGTTTGAGGCCATGTACTTCCTAAACTTCTCTGTGCATCACTACTTGGTAACCTGTTAAGAGTTGTTTAGACAGCTTTAAGAGAGCGGTAGCAGCTCATTAAACAAGCTGAGGACACAGACTGTTTTTCTGCTTGACGAATGTCTTGCGAAAAACACACACGAAGCAGAAAGAATCTGAAACCCAGGTctgaataataaattataaaagctAGAAAGGAGCTAATTCAGTTCAAGctagttcaattaagggctcAAGGAAAGGAAAGGGAGTGAAAACCAACTCGGAACTAAGGCCGGGAAACCCTTGTAGGCCAGAGACACACACTACACTATCTTAGCTGGATCTGTGTGTGGAATCTGAAGTGTAAATCTGGCTCGGCCACATTTCTGTAACTAAACAGGATTTTGGTTTTCAGCTTCTGTGAACTGGCCACCACCCAAACACCTGGGATTTGAGCTGCAGTGCGGTGTATAGGTTTTGTCCACATTTAATCGTGCATTTTATATGAGATCAAGATCGATGCTCAAACCATACGTGCTGTTtttctagagcaggggttcttAACCTAGGGGTCGTGAGGAACATCTagcagtaaataaaaataacgaTATGACAAATCAAAATAAGTATTGGCAGTTAAATTCCAATTTAGGCCGCTGGTGATTTCAAGGTGGCTGTGAAATTCTGGAAAAGTTACCGATCATCACCTGCTTATGGATCAGAAAACCACAGAGAAGGACTGATGCCCAGATTATTGACACGTAGCTAAAGTCTTGATTACAGTCACTGAGTGCACTGTGGTGGGGGGATCCAGCAGACAAGTTCCTCTAGGGCCAGGGcgagaggg

Function

GO: NA

KEGG:

id description
K08074 ADPGK; ADP-dependent glucokinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003744 True 4939 mRNA 0.50 6 17032570 17042594
TU3513 False 1452 lncRNA 0.44 1 17041113 17042564

Neighbor

gene id symbol gene type direction distance location
AMCG00003745 hnrnpu,LOC107689318,LOC107729300,LOC107693167 coding upstream 2942 17015664 ~ 17029628 (+)
AMCG00003743 NA coding upstream 155325 16872643 ~ 16877245 (+)
AMCG00003739 NA coding upstream 181731 16847794 ~ 16850839 (+)
AMCG00003738 NA coding upstream 333222 16693570 ~ 16699348 (+)
AMCG00003737 NA coding upstream 371623 16651834 ~ 16660947 (+)
AMCG00003750 NA coding downstream 35491 17078085 ~ 17104248 (+)
AMCG00003749 hpcal1,LOC106607246,LOC105015955,LOC107565203 coding downstream 61670 17104264 ~ 17108278 (+)
AMCG00003752 NA coding downstream 119146 17161740 ~ 17205182 (+)
AMCG00003755 NA coding downstream 486803 17529397 ~ 17552735 (+)
AMCG00003759 NA coding downstream 534140 17576734 ~ 17577808 (+)
G2861 NA non-coding upstream 98550 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 433241 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 435201 16593264 ~ 16597369 (+)
G2797 NA non-coding upstream 602015 16429034 ~ 16430555 (+)
G2755 NA non-coding upstream 801072 16229935 ~ 16231498 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding downstream 165441 17208035 ~ 17210041 (+)
G2967 NA non-coding downstream 211672 17254266 ~ 17256450 (+)
G3265 NA non-coding downstream 1396212 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 1502390 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 1902988 18945582 ~ 18946131 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 992930 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 1714342 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 2165812 14851752 ~ 14866758 (+)
G2440 NA other upstream 2612838 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 3825731 13155060 ~ 13206839 (+)
G3047 NA other downstream 639223 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 1089325 18131919 ~ 18142633 (+)
G3108 NA other downstream 1104066 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 2229371 19271965 ~ 19397686 (+)
G3751 NA other downstream 4506607 21549201 ~ 21549533 (+)

Expression


Co-expression Network