AMCG00003745 (hnrnpu,LOC107689318,LOC107729300,LOC107693167)


Basic Information

Item Value
gene id AMCG00003745
gene name hnrnpu,LOC107689318,LOC107729300,LOC107693167
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17015664 ~ 17029628 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003745
CTGTTGCCAGTGGGGGAGACGCACAGACGGGGAGACGCGTTGTTTGGCGCAGTAGAAATTCTAGGCGGCTCTGCTTTCTCTGAATTACATCGGCTGGTGGGCTTTCTTTTTCCAACAATAAAACATCTCGGCTTCCAGTGGACAGATAACGGAtcgaaaaagagagaaaatgagtTCCATCAACGTAAAAAAGCTCAAGGTAAACGAGCTGAAGGACGAGCTGAAAAGGCGGCAGCTCTCCGACAAGGGGCTGAAGGCCGAGCTGATGGACCGGCTGCAGGCCGCGCTCGACGAGGAGGCCAAAGCCGGCGGGGCATTCAGCGGGCCCGGCGGGGAGGAGAACGGGGCCGAGGGCGGCTCGGAAGAGGCGGGCGCGTCGGATGAGATGGCCGAGGACCTGGAAGACGAACTGGCCGGGGAGAGCATGGAggccgaggaggaggaggaagacggGGACGCGGCGGCAGAAGGCGACGCTGGTGCCGCCGCTGCTCCTGCTGTTGCCGCTACTACTGCGGGCGGCGCTGCTGCAGAAGCGGCCGGGCAGGATGATGAGATGggcgaggaagaggaggaagatgCCGGCGTGGAGATGGATAAGTCCGACGACGAGGAGGACGCGGGCATAGAGATGGATAAATTCGTCGACGAGGACGAGGCGCAGGGATCCCAGCCCGCTGAAGGAGACGCAGAGAAAGACAAGAGGGGTGATCAGAAGAATAAGAAGGGTGTAAAGCGACGTCGTGAGGAGCACGGAAGGGGCTACTTTGAATTTATTGAAGAAAGCAAGTACAGCCGGGCTAAGTCACCCCAGCCACCTctggaggaggaagatgaggagTTTGATGACACCACAGTTTGTCTGGATACTTACAACAGCGATCTGCATTTCAAGATCTCCAGGGATCGGTACAGCGCCTCATCTCTGACAATGGAGAGCTTTGCGTACCTGTGGGCTGGCGGAAGGGCCTCCTATGGGGTGGCCAAGGGCAAGGCCTGCTTCGAAATGAAGATTATTGAGAAGATCCCAGTGAAACATGTTTCAAGCAAAGGTGTTGAAATCCATGAGGTGCAAGTGGGCTGGTCCTTGGCCAACGGCAATCTGCTACTCGGCGAGGAGGAGTTCTCCTATGCATATTCAGTCAAAGGGAAGAAAACCACTAACTGCGTGACTGAAGACTATGGCGAGTCATACGATGAGAATGATGTCGTCGGATGCTTTATCAATTATGAAGGTGAGGAGGTGGAGCTCTCCTACTCCAAGAACGGCCAGGACCTGGGAGTGGCCTTCAAAGTCAGCAAAGAGGCCCTTGCAGACCGGCCTCTCTTCCCTCACGTGCTGTGCCACAACTGCGCCGTGGAGTTCAACTTCGGCCAGAGGGAGACGCCCTACTTCCCTGTGCCCGAGGGCTTCACCTTCCTGCAGCAGGTCGCCGTGGATGACCGGGTGCGAGGGCCAAAGGGACCAGAGACGAAGAAGGATTGTGAGgttATTGTAATGGTTGGCCTGCCGGGCGCTGGAAAGACTACCTGGGTGATGAAGCACATCGAAGAGAATCCAGGGAAATACAACATTCTTGGAACAAACACCATCCTGGAGAAAATGATGATCGCGAGCTTTAAGCGCCAGCTGAAGGACACCGGGAAACTGACCGCCATTTCTCAGCGAGCCCCTCTGTTCCTGGGAAAGTTCATCGAGATCGCCGCCCGCAAGAAGCGCAACTACATCCTGGATCAGACGAACGTGTCAGCCCCAGCCCAGAGGAGGAAAATGTGCCTCTTTGCGGGCTTCCAACGCAAAGCCGTGGTGGTGTGTCCCACAGACGAGGACTACAAGCTGCGCACTCAAAAGAAGGCCGAGACGGACGGCAAAGACGTCCCAGAGCACGCCGTCCTCAAGATGAAAGgGATCTTCACGTTGCCGGAGCAAGGCGAGTGCTTCGATGACGTCAGCTATGTCGAGCTGCAGAAAGAGGAGGCCGCTAAGCTGCTGGAGCAGTACAAGGAGGAGAGCAAGACCGTGCTGCCCCCTGAGAAGAAGCCCAACCAGGGCGGAGCCACCCCCAAGAAGGGCAACCGAGGCAGAGGGGGCAAGAACCAGTTCAACAGGGGCGGCGGCCAGGGCCAGCGCGGTGGCCGTGGAGGCTTCCAGAACAGAGGCAGCTTCCGGGGAGTACCTGGACCCCGGGGTGGCTTCAACCGACCTCCCCGAGGATTCCTGCCCCCTCCGGCCTTCAGAGGCGGCTTCTCAAACCGTGGAAACTTCAACCGGGGAGGAGGCATGCCCAACCGAGGCGGCGCTCCCCGAGGCGGGCCCAGCCGGGGCAACATGGCCAGGGGCGGTGGCATGAACCGCGGCAGCCTGAACCGTGGAGGAGGAGGCGGTGGCGGAGGAGCCAGCCGTGGCAACTTCAACCAGAAATTCAGAGGCAGGGGAGGAAACAACAACCGTGGTTTCAAGAATGGGAATTTCGGGATGAACAAGGCCCAGGCTTTCAACCAGAGCTGGCAGCAAGGGttctgGAACCAGAAGCCGTGGAGTCAGCAGTATCACCCTGGAGGATATTACTGAATGCTGTGTAGATGAACTGGTGATGCACAGACATCTTGCTCCACAAAACCTTCATGGatcgacttttttttttttttttttttgtcacttttaaaaatttaaatttaaacaaacaccaacaccaacaacaaaaaacattccacATCTGAGGAAAAGTGCCTGCGGGTTCTCTTAGAAGCTTTATGggttaattttactttttatttttgtacatttttttttttttagttttttagttttgtttttaaattcccaTGCTTTAATGTATAATGTCAGGAACCTCAGCATTGTGTAGAATGGGATGTTTCTGTAACTTCAGGGTTCTGCattttatctgtaaaatgtgatttttactAAGTAAATTGACCTTTTCTTTTccgtttttagttttcttgagTAGTACCAGTTGTCCTTATTAGTGTTaaactttcacatttaaaatcgggaggaagaaaaacactCCTTTTAGAAGCATGTAGACATATGTGAGTTATTGTATCAGTAGTCCCACAGCAGCAAATACGTTTCTAAACTGATAGGTGAAGCTGTGACGGTTAAcgttctgtgtgtttttaaagaaagaggCTTCATTTGTTGGTGAAGATGATCCTTCGACCTGTAAAAGCTAAACTTAGGTTTACAATAAACGGGTTCTTTGCTTTTTTACTTGTATTgttgatgtgtgtttttcacaATTTGACTTCAAAGGTGTAAAACAACCTTTGAATGAGtttgaaagtatttttgttGCAAAAAGAAGAGAAACTGCCCTGTAATTGTGACCTAACTtgaattttattaaacatttattaggGCAGAAAATCATATGCAACTCCTTAAATATTTTGTGGTTatcccatttatttttgtctagtCTTCCCAAAGTAACACGTTATTGGGAAGTAATGTAGGGAAGcaaagaaatgatcaattaCAAACCAGTGGAAGACTTCAGTGTTTGGATATAAAGGATGCAGTACTAACAACAAAACCTCCATTCATTAACTTTAGACAAATGACAAGCTAATGTAGCATTAGTCATTGGCAGCCCTCAGTGGTGTCTTATtttatctgtaaatatttttaaatttgaaagcaCACTTTTCTATCACAGGGTGAGGCTATGGTGTTCAACTCAACAGTGCAAATACACAATGGATTTAATCTGAGAAGGGAGGGGGCTTGACTTTCCTTTACATGGGTGGTTTTGAAGCAAAGAGCAGTTTAGCTTTTGGAATCGGTTGCATCAGTGCTTTTGTGACACTTAACCCTTTGGTGTCCAAGGTGCATCTTTCTTTCAGGTTGTTTACACGGCAATCAAAGCCTCTGAACCTCGCAATCCTCCACCCTAGGGCTCGAGTCCTTTGGGGTTGTGTGGAGCCCAGGGATGATACTTTCTGTATCCAGGGTCACCACTTTAGAAGCTTTTAACTGCTTAATGTAATTCAACACTTTAAATAACACTAGCTTGGTGTTGACTTAAAAGACCAAGGAAAAACCTTGcaagttatacatttttaagaatgccatgtaaaacaaaatgagtttTCCTAGCCTGAGACCTGAATCCTGGTCAATTGTGACATTAAAAAGATAGGAACTGCAATGAACACTGTTTAAGGAGGAAAATGCCAACATTCAAGAGGCATGCTTTTACAAAccatgtttatatgtatatttatatattaaatcaagCAAGGCTCAAACATGAGTAATGCAAGCATTTTTCACATGGAAAACTTCAGTAATAAACATTAGGTTATACGGAAAAGAACTGTcaatttaattatctttaataATGGGCTAGGCAGAGCAATGCGTGTGAATTACACACATGGTATATTCAGAGCATCCTCACATCATGTTCGTGTGCTCCGCAGTTTtctaaagatttttttatattttagctGTCGGTCTTAATGTTTTTCTAAGGCTCTGTGTAACCTGCAACGGTCTGCAAGTGGCAGTGAGAAAAAGATGCCAGTTTGTCTTTTCATACACCGTAAACTTTATACAACCTTCCAATTGTATTATGCAGGGTAATCACCGTATAGTGaagtatatgatttatataaactagttttaattgtgttttttgtagaaataacattttctaaacCTTGTGAACTACTGCAATAGaacttaaaaggaaaaaaaaatgaaatgttaactTTTGTGCTTATTCAGAGGAAACTTAAATTATCcaggtaaatgtttttattttgttttattattttttcccccatttttgttttcctaattgTACTGTTTACGCCTGGTTTTGTGGAGTGATGTACACTTATTCCTTGAAATATTTTTGGAAACTTCCCAAAGGCActgaatttattaatttaatttaatgcagaGTGATATACCAGCTGGAATGGGTAGTAAAGGTTAGTCTTTTTTCTCTCCGGTTTTCACAAGTGCTCAGTGATCCGTTCGGCACCGCTTTACCTTCCGTTCTGCGGTCTCCAGTGTTGCTCTAAACtggggagaaaaaatacaaaagtagaGTGGCCCATATTCACAAACCGGTCTGATAGAGAGAACGTTTCTTTTTAATAACTTAAgatgtaaagtgtttttaaagcagattTTTATTCCAAATGCTATCTATATAGATTCTCAGCCGACATGGATCAAGGAGTACATGTGGGGGaagttttgtaaaatatctgTGGCATGTGCTGTACATTTTGCAGCTAGTTTCGGTCCAGCTTGCTTGTTCTACTGTGATGTGGATGTACACAGTTTTAAGTATTTGGTCAGGTGTTATTTCAGCAAACGATACTGGGGAACTGTTCCAATTTTGTaaaatagacttttttttttctttttctttttatatatcttgctatgttttgtattttgctatgacaaattaaaacaaagataagAAAAAGCTgaccaaatactttttatttttattttcaataacttTTACAACATAAGTAAAGTACACACGACAAAATAAACAGATCTTCCTAATGCGAAAA

Function

symbol description
hnrnpu Enables several functions, including ATP binding activity; basal RNA polymerase II transcription machinery binding activity; and nucleic acid binding activity. Involved in several processes, including protein localization to organelle; regulation of cell cycle process; and regulation of nucleobase-containing compound metabolic process. Located in several cellular components, including chromosome; microtubule cytoskeleton; and nuclear lumen. Part of CRD-mediated mRNA stability complex; catalytic step 2 spliceosome; and telomerase holoenzyme complex. Colocalizes with RNA polymerase II transcription regulator complex. Implicated in developmental and epileptic encephalopathy 54. Biomarker of colorectal cancer.

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein U

GO: NA

KEGG:

id description
K12888 HNRNPU; heterogeneous nuclear ribonucleoprotein U

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003745 True 5571 mRNA 0.45 14 17015664 17029628

Neighbor

gene id symbol gene type direction distance location
AMCG00003743 NA coding upstream 138419 16872643 ~ 16877245 (+)
AMCG00003739 NA coding upstream 164825 16847794 ~ 16850839 (+)
AMCG00003738 NA coding upstream 316316 16693570 ~ 16699348 (+)
AMCG00003737 NA coding upstream 354717 16651834 ~ 16660947 (+)
AMCG00003733 kif28p coding upstream 426165 16576388 ~ 16589499 (+)
AMCG00003750 NA coding downstream 48457 17078085 ~ 17104248 (+)
AMCG00003749 hpcal1,LOC106607246,LOC105015955,LOC107565203 coding downstream 74636 17104264 ~ 17108278 (+)
AMCG00003752 NA coding downstream 132112 17161740 ~ 17205182 (+)
AMCG00003755 NA coding downstream 499769 17529397 ~ 17552735 (+)
AMCG00003759 NA coding downstream 547106 17576734 ~ 17577808 (+)
G2861 NA non-coding upstream 81644 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 416335 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 418295 16593264 ~ 16597369 (+)
G2797 NA non-coding upstream 585109 16429034 ~ 16430555 (+)
G2755 NA non-coding upstream 784166 16229935 ~ 16231498 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding downstream 178407 17208035 ~ 17210041 (+)
G2967 NA non-coding downstream 224638 17254266 ~ 17256450 (+)
G3265 NA non-coding downstream 1409178 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 1515356 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 1915954 18945582 ~ 18946131 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 976024 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 1697436 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 2148906 14851752 ~ 14866758 (+)
G2440 NA other upstream 2595932 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 3808825 13155060 ~ 13206839 (+)
AMCG00003744 NA other downstream 2942 17032570 ~ 17042594 (+)
G3047 NA other downstream 652189 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 1102291 18131919 ~ 18142633 (+)
G3108 NA other downstream 1117032 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 2242337 19271965 ~ 19397686 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_04476520_04487094 HNRNPU coding CI01000310 null 4476515 ~ 4487430 (-)