AMCG00003751


Basic Information

Item Value
gene id AMCG00003751
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17137248 ~ 17140382 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003751
ATGGACCTCTACGATTTCGTGATGCAGAAGGGCGGCCACCTAGACGAGCCCATGGCCAAGGACTTCCTANNNNNNNNNNTGCAGGCGCTTCAGCACTGCCACACCCGTGGAGTGGTCCACCGCGACctcaagatggaaaacatcCTTGTGGAGAGCATCAGCCACCGCCTCAAACTGATTGACTTTGGCCTGGCGAGCCGCCTGCGGGATGGTTTCTACAGAGACCAGGCCGACCCAAGCCATTGCTGCCAGGGCCTTTTAATTGCACAGGTCAGCTGTCGTGTGCGCCGCAGTGTTAACAGGCCAGGCTGGCTTCGCGACGAGGAGTGGCCATCCTCCGTAAGGCTGGAGTGGCAGAGCAACCGATCAAATCAGCAGCAGTAG
>TU3581
CAGCCACCGCCTCAAACTGATTGACTTTGGCCTGGCGAGCCGCCTGCGGGATGGTTTCTACAGAGACCAGGCCGGTGAGCAGCGGCACAGTGTTCACACACAGAAGGCATGGATGCCACCAGAGAAATGTCTCGATNNNNNNNNNNNNNTCTTTCATGGCACTTCATACGTGAAGACTGGAGATCCGCAGTGTTTGGGGATCTTATTGGAATTAAGCTCGTTTTAATAACAATCATCGCTGGAATTATGATTCTTCAGAATGTTTTTG

Function

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0007634 optokinetic behavior biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003751 True 384 mRNA 0.57 2 17137248 17140382
TU3581 False 268 lncRNA 0.46 1 17139957 17140224

Neighbor

gene id symbol gene type direction distance location
AMCG00003746 NA coding downstream 90223 17043634 ~ 17047025 (-)
AMCG00003748 NA coding downstream 123474 16998780 ~ 17013774 (-)
AMCG00003747 kif26b,LOC102197193,LOC107097817 coding downstream 143226 16993119 ~ 16994022 (-)
AMCG00003740 kif26b,kif26ba,LOC107682227,LOC107693166 coding downstream 244369 16883972 ~ 16892879 (-)
AMCG00003741 NA coding downstream 256126 16880036 ~ 16881122 (-)
AMCG00003753 NA coding upstream 64931 17205313 ~ 17229181 (-)
AMCG00003754 prox1a,LOC107592773,LOC107752784 coding upstream 135260 17275642 ~ 17291950 (-)
AMCG00003757 rps6kc1 coding upstream 328958 17469340 ~ 17513471 (-)
AMCG00003758 NA coding upstream 374134 17514516 ~ 17526657 (-)
AMCG00003756 NA coding upstream 415575 17555957 ~ 17565405 (-)
G2902 NA non-coding downstream 94699 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 139644 16996790 ~ 16997604 (-)
G2834 NA non-coding downstream 548955 16588069 ~ 16588293 (-)
G2832 NA non-coding downstream 550982 16586062 ~ 16586266 (-)
G2765 NA non-coding downstream 886765 16247935 ~ 16250483 (-)
G2973 NA non-coding upstream 113889 17254271 ~ 17254765 (-)
G2972 NA non-coding upstream 117555 17257937 ~ 17259543 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding upstream 795458 17935840 ~ 17940712 (-)
G3257 NA non-coding upstream 1269488 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 1298719 18439101 ~ 18439510 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 265773 16868332 ~ 16871475 (-)
AMCG00003734 NA other downstream 508847 16607410 ~ 16628401 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 1545518 15515673 ~ 15591730 (-)
G2500 NA other downstream 2325917 14810786 ~ 14811331 (-)
G2373 esrrg other downstream 3124227 14009458 ~ 14013021 (-)
G3181 NA other upstream 802195 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 994997 18135379 ~ 18142681 (-)
AMCG00003782 ctsb other upstream 1006278 18146660 ~ 18152381 (-)
AMCG00003825 NA other upstream 2221436 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 2284581 19424963 ~ 19425366 (-)

Expression


Co-expression Network