AMCG00003752


Basic Information

Item Value
gene id AMCG00003752
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17161740 ~ 17205182 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003752
ATGGATCAGGTTACGGCGAGTGACTACTGGAAGTTCCGAAAAAGAGCTGGAATGGACCTGAAATCAACTGAAGGAACTCCCCTCTGTGAATCTGAGACCACCGCCACAGAAGGGCTCGGAGACCGCAGCaggagagtgggggggtgggggcgcgTTGCCGCGCTGCCCTCAGCCATGCCTTTCCGCCTGAAGTTGCGGCGCACCCGGCGCTACAATGTCCTGAGCAAGAACTGCTTCGTCACGCGCATCCGCCTGCTGGATGACAACGTGATCGAGTGCACGCTGTCTGTGGAGAGCACCGGTCAGGAGTGCCTGGAGGCCGTGGCCCAGAGGCTGGAGCTGCGAGAGacaaaCTATTTTGGTCTGTGGTTCCACAGCAAATCCCAGCTCCAGCGATGGGTGGAGTTGGAGAAACCCCTGAAGAAGCAGGTGGACAAATTTGGTAACGAGCCCCTGCTTTTCTTCGGCGTGATGCTTTATGTGCCGAACGTTTCCCGACTCGAGCAGGAGGTCACGAGATATCAGTATTACCTCCAGGTGAAGAAGGAAGTCCTGGACGGGAGGCTACCGTGCACCGTTGAGCAGGGCATCAGGCTTGCTGGACTCGCTGTGCAAGCTGACTTTGGAGACTTCAACCAGTTTCAGTCGCAGGATTTCCTCAGGGAATACGTTCTCTTTCCAGTGAAAGTGGCCGAGGAACACAAGAGTCACTGTCGGATGCCTCCTGCAGATGCCGAGCTCCTCTACATTAGAGAAGTGGAAAGGCTTGAGGGATTTGGGCAAGAAAGCTTTACTGCCAAGGATAACTTGGCCAATGACATTTACCTTGGAGTTTCCTTCATGGGAGTGTTTGTCAAGCACAGAAGTGGGAGATCAACCATTGTGTACAGGTGGAATGACGTCGGCAACATCACGCACAACAAGTCTGCCATCACCGTGGAGCTCGCAAACAAAGAGGAGACCGTGCTCTTTCACACAGATGACATGGAAATGGCCAAATACATTTCCAGGCTGTTTGCTGCCAGACACAAATTctacaaacagaacaaaatatgtacAGAGCGGCCCCATTCCCCCGCACAGATCAGGAGAAGACCCACATGGAGCCGTTCCTCTCTGcCTAGGCCTCCATCGTACATCCTCCAGCCGATGCATTCCCAGTATGGAGAACATTACCAAGAAACACAGAGTTCTCAAGACAGCATATTCATTGACGACATCAACCCGTATTACAAGTCTCAGACGAGCCTGGACAGGTGTCCGGTGGACTATGGCTTCATGAACGGCACGGTGCCCAACGGCAGCGTGTATAGCACCCCCAGCATGAACTCCCTCAACCACTCGGGCTACATGCAGGCGTCGCCCATGTCCTCCTGCCTCAGCATCCCAGGCAGCGAGGGCATCATGAGGCAGGACTACATCCCCAGCCACCGGCACAGCACCATCATCCCGCCCTCGTACCGGCCCACCCCAGAGTACGAGACCGTCATGCGCCAGAAGAGGGGCGTGGTGCCCATGGACTGCCACAGCCAGTCGCTGCGCAACCTCAACATCAGCAACACCTTTGCGTACCGGCAGCCTGAGGGCATGGTGTATAGCCAGCCAGAAATGCGCGAGAGGGCGCAGTACCCCGGCCCCTATGGCCCACCGCTTAGCTACAGCAAACCGGTGCAGGCCTCCGCCCAGGTCAACGCCCCCGGCGGCTCAGCCCCAGCCAACCAGGCGGCCTCCCCCAGCGCCATATCGCACACGGTCAGCACCCCCGAGCTGGCCAACACCAAGCAGCAGGGGGGAGGGCAGGGCTACAGCACGGCGCACATGCTGAGGAACCACTTCTCCCGGCCACCGCCCCCGTACCCCCGCTTCCGCCCGGCTACCAGCACCCCAGACCTGGCCAGTCACCGGCACAAGTACATCAGTGGCAGCAGCCCTGAGCTGGTGACCCGCAAGGTGCAGCTCTCTGTCAAGACCTTCCAGCTGGACAGCTCCCCTGTGGTGCGCCAGTCCCCGCAGGAGGTCAGCGAGCCCCTCACGGCCGCCAAGCACCACTCTGCAGTCAACAAGCGGCACAGCCTGGAGGTGATCAGCAGCATGGTGCGCGGCATGGAGGCCATGGCCATGAAGACGCTGAATGCTCCGCTGCCCCGCAGGAACACGCTGAGGGAGCAGGTGCAGCCGCAGCCCCAGGAAGAGCCCCTGCAGAAGGGCCCGGAGGCCGCGGCCGCCCCCCAGCAGTACCGGCACAAGAAGACGCTGTCTAACGCCACCATGCTGATCCACAGCAGCgacagcgaggaggaggaggaggaggaggaggaggaagaggaggaggaggaagagacgCCAGACTATGACGTGCGGATACCGGGGCTCAACGATGACATCAGCGCGCAGCTCCAGGCCGCCCTCGCCAAGCTCCCCAACAAGCCCCCCCCGGAATACCCCGGCCCCCGCAAGTCCGTCAGCAATGGCACCCTGCGGCACGAGAGGGGCCCTCCCGGCCCCCCAGCCCCGGAGGAAGCCGCTGCCAGGGCGAGGCAGAGCAGAGCCGGACACAGTCAGGTCGGCACGCTGTCCCGCTCCGAGCAGGTCCCCCTCAATGGGTCCCTCCTGGGGCCGTCCCTCTCGGAGCCTGACCTCACCAGTGTGAAGGAGCGGGTCAAGAAAGAGCCCGTCAAGGAGAGGCCCGTCTCGGAGATGTTCTCGATAGAAGACAGCATCGTGGAGAGAGAGATCATGCAGAGGACCATGGAGAAGCAGAAGATGGCCATGGATTCCCTGAAGAGGCCGCTCATGATGGCAGCTCTGAATGGCCTGTATGTGGCAAGGATGCCCTTGCCAGAGACCCAACAGGAAGAAGCCTCCAAAGTGACAACAGACGAGAGGTGTAAGGTTCTGCAGCGGAGGCTGGATGAGGAGAGAGTGTTCACGGAGTACGAGCAGATCCCCAAGAAGAAAGTGGACTGTGTCGTCACCACGGCAACCCTGCCGGAAAACGCAGAGCGCAACCGGTTCCGGGATGTGGTGGCCTACGAGGACAACCGGGTGGAGCTGGTGCCGACCAAGGAGAACAACACGGGCTACATCAACGCCTCTCACATCAAGATGACCATCAGAGGTGAGGCATGGCACTACATCGCCACTCAGGGGCCGCTGCCAAATACCTGCCAGGATTTCTGGCAGATGATCTGGGAGCAGGGGGTGAATGTCATCGCCATGGTAACTGCGGAAGAGGAGGGAGGCCGACCCAAGAGCCACAGGTACTGGCCTAAGCTGGGCTCCAAACACAACTCCGCCACGTACGGCAAGTTCAAAGTGACGACCAAGTTCCGCACGGATTCCGTCTGCTTTGCAACGACGGGGTTGAAGGTCAAGCATCTTCTGTCTGGGCAGGAGAGGACGGAGATCCAGTCCGTGCGGCGCCACACCAACAGCATGCTGGACACCTCCAAAAGCATAAAGCCCCCCGTTGTGGTGCACTGCAGCGCCGGGGTGGGCCGCACCGGGGTGGTCATCCTCACCGAGCTGATGATCAGCTGCTTGGAGCACAACCAGAACCTGGAGGTTCCTGCGATGCTGGGGGCGCTTAGGCAGCAGCGCATGCTCCTGGTCCAGACCGTCTCCCAGTACACGTTCGTCTACCAGGTTCTCATCCAGTTCCTCAAGAACTCCCGGCTGATATAGGCCGGCGAGAGGATTTCATTCCCCTGATGGCTGATGGTCTCACTGTTTTACAGGCCAACCTATAGCTGTGTTCTCAACACAACTTTGAACTTGGGCCAAagtctgcatttttaaatcattcagttcttttcttcattatttttgtatgctaTGAAAACATTTAGTTTCCTTTTCTAAAACTAGTTCCCCTCTGAAAGTCCATTCTTTATATAGACCATTATATTATAGTCTGTTCTCATCGCCTAGTTCTTTGttccacatttcaaaatattattcaaagataaaaaaataaatgttatttttttaagagacATAACTATCACAGCTCCCTTTTAAGCCACTTAAAATCCCAAATTTAAAATCTGAGGTCAactatatttgttttagcattTCAAACGAGACTGCAAAAGAATAAAATCTTGCAACACTTATTCCTAGTACCTGATAGGAAGCAAAGCTAGCCTGTTCAAAATGAACGCAGCTGTGTGTTGTGGATAGGCTTTTGTTCCTGACAACCATTAGACTATCCAGACACTTATTTTGGGACCCTGTTAAACGacaagagaaatatatatttatatttattttatattactgtaGGGAACTGGCTTATGAAATTTGTGTTGTAAAAACAGGTAAAGAAATACACAAGTGTTTTAgatgtaaatattaattgtgAACAGCAGGGGTCAGTAGAGACCGGCAGTCGGACTCCAGTTCAGCGTGGATTGCAGTGCCTCCACAGACGCCTCCCCGAGATCTTATTTTCCAAACCTTTGAAATCGACTCGCCAAATACAAGTTGTTACATAATAAGCACCTATCAACTGTCACgacatttcattgcattttttaaagtagcatcgttttgtatttcataatttatttcaggaTCGGAATAGTTAAATGTAACTAAAATTATTATTCCTGATACGAACCTTCTTCTACGAGTGAAGAGTGTAATTTCCACAAGCAGCCGAGCATCCAGAGGTGAAGCATCGATGGGATTGTGTACATAGCTGTCCTTGGCAAGTCTCTAAGCTTTTACGTGTTTTATTGAACTAATCGGGGACATTTTTCTCTATGctttgcagaaaaacaaaatgtaaagggttttcagatttgtatcgttattttaattattctgcatttctttaatcTACTTTAAATTCCACATGTATTAGCAGATCTGCTGGTGGTTTCAAATGCTAAAGTACTAGCATTGAAAGACTGCTTCAGTTTCCAGGCAGCACACGACCCCAGGGCATTACTGTTCAAAGCCATAGCTGTGTTTCAATGTTTTCTCTGcttagtttcttgtttttgcgTTTGGATTTCCTTTAAGCATTCATTTCAAGAGTTAATCCCATCGAGTGGACTATGACGATAACCAGAGCTGGTTGTAAATCTGCCTGTTGGCATCACAGTATTGTTGACCCAAAGCACCCAGCATTGTATTGCTCCATTGCTTGCAGTCAGAACAGACACTGATCCTGAATTCCCCCGTGGACAGGCGCACGGCCGGGACATCTTTCCACCCAGACATGTTTGAGGTCTTGCTTACAAGAAAATATAACCggtggaaaaaaaagtaatcttgTCCTGGTTTGTTTTGCGGTTTATGGCACACCTGGAGACGATCTGTTTCTCAACAGATATTGAGCTTTCTGCACCGAAAAAAAGGGCCCGGAAAAACGTTATCTGGACCTCCATGAATTAAGAGCTGTGGGCTGGAGAGTGTCagactttaaatgtaattttttgttttgttttttggtaggAACATGTCCTGCTTGTTGTCAAAAGCATTTCCATTGTGATGCCATTAATTTAAGTGCgtgctttgtttgttgtgtttatgtgCAGTATGGATGTCTGAATTTTTCCTGTTTCCAATGAGTGTTGTCGTCCcgtcccccccctcccccaacacacactttttgttttccatttctgttagctGTGGGAAAAGAGAGGAGGCTGTTGCAAGGGCTACTGAGTCTAAAAGTACTAGGATTGTGTGTTGATAGATCAGGTAGAAAAACAAGTGCCTAAAACCTTAGAACCTAAAAAGATGATATTGGTCAGGTATCTGTATTTCCAATATGGGTGATGCAATGTTCAATTGGAAAATAGTCCTtgtattagattatattttggACCTAATGGAATTTTTAAGAATGTCTGACTTGTTTTTTCCTCATACTGTACAATTTGTGTAAACTACGCCTGCCTTTTTATACGCGACTGTGTGCTCTGAGCCCAGTGCCGGAGCTCGTGCTTCCCAGTGAGCAGTGACAGTATTTTGTGCAATGCGTTCCACCACACCGGCCTCCCTCCACTTGTACGACACCTGTTCGCTGACCGCCCACTGCTCCTAATTTTGTACATATTCTTTTGTATATGCCTTTCAACCTCCGTAACCCATTTCATCACTGTAAAAATGCTGTCATGATCGCTCTTtatgcaataaaacattttcaagatt

Function

GO: NA

KEGG:

id description
K18025 PTPN14_21; tyrosine-protein phosphatase non-receptor type 14/21

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003752 True 6171 mRNA 0.51 20 17161740 17205182

Neighbor

gene id symbol gene type direction distance location
AMCG00003749 hpcal1,LOC106607246,LOC105015955,LOC107565203 coding upstream 53462 17104264 ~ 17108278 (+)
AMCG00003750 NA coding upstream 57492 17078085 ~ 17104248 (+)
AMCG00003745 hnrnpu,LOC107689318,LOC107729300,LOC107693167 coding upstream 132112 17015664 ~ 17029628 (+)
AMCG00003743 NA coding upstream 284495 16872643 ~ 16877245 (+)
AMCG00003739 NA coding upstream 310901 16847794 ~ 16850839 (+)
AMCG00003755 NA coding downstream 324215 17529397 ~ 17552735 (+)
AMCG00003759 NA coding downstream 371552 17576734 ~ 17577808 (+)
AMCG00003760 dnajc27,LOC106605409,LOC107733160,LOC107752776,LOC107674103 coding downstream 413242 17618424 ~ 17622439 (+)
AMCG00003761 NA coding downstream 424104 17629286 ~ 17640891 (+)
AMCG00003763 NA coding downstream 533060 17738242 ~ 17778447 (+)
G2861 NA non-coding upstream 227720 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 562411 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 564371 16593264 ~ 16597369 (+)
G2797 NA non-coding upstream 731185 16429034 ~ 16430555 (+)
G2755 NA non-coding upstream 930242 16229935 ~ 16231498 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding downstream 2853 17208035 ~ 17210041 (+)
G2967 NA non-coding downstream 49084 17254266 ~ 17256450 (+)
G3265 NA non-coding downstream 1233624 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 1339802 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 1740400 18945582 ~ 18946131 (+)
AMCG00003744 NA other upstream 119146 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 1122100 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 1843512 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 2294982 14851752 ~ 14866758 (+)
G2440 NA other upstream 2742008 14418516 ~ 14419732 (+)
G3047 NA other downstream 476635 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 926737 18131919 ~ 18142633 (+)
G3108 NA other downstream 941478 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 2066783 19271965 ~ 19397686 (+)
G3751 NA other downstream 4344019 21549201 ~ 21549533 (+)

Expression


Co-expression Network