AMCG00003754 (prox1a,LOC107592773,LOC107752784)


Basic Information

Item Value
gene id AMCG00003754
gene name prox1a,LOC107592773,LOC107752784
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17275642 ~ 17291950 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003754
ATGCCTGACCATGACAGTGCAGCCCTCTTAAGCAGACAAACCAAGAGAAGAAGAGTTGACATTGGAGTGAAAAGGACTGTAGGGACAGCATCTGTGGTTTTCGCGAAAGCAAGAGCAACCTTATTCAGTGCCATGAATCCCCACGGCTCCGACCAGGACGTAGAGTGTGCAGTGGTGCAGCATGCAGATGGGGAGAAGTCAAACGTGCTCCGCAAGCTGCTGAAGAGGGCAAACTCCTACGAAGATGCCATGATCCCTTTTCCTGGAGCGACCATCATTTCCCAGCTGTTGAAAAATAACATGACCAAAAACGGTGGCACCGAGCCCAGCTTCCAGGGCAGCGGGCTCTCCAGCACCGGCTCTGAGATTCACCAGGAGGACGCCTGCAGCAACTCCTCGCGCGAGAGCCCCCAGGAGTGCCTCTCCCCATTCAGTCGGCCCACCATGAGCCAGTTTGATATGGAGCGGCTTAACGATGAGCACCTGAGAGCCAAGAGGGCGCGCGTGGAGAACATTATCCGCGGGATGAGCCACTCGCCCAGCGTCACGCTGCGGGCCGGGGAGAGTGACCGAGAGGGGGCGCCGCAGCCGTCCAGCCCCCGGGAGAGCTACCGAGAGAACAAGCGCAAGCAGAAGctgccccagcagcagcagcagagcttCCAGCAGCTGGTTTCGGCCCGCAAGGAGCAGAAGCACGAGGAGCGGCGGCAGCTGAAGCTACAGCTGGAGGACATGCAGAAGCAGCTGCGGCAGCTCCAGGAGAAGTTCTACCAGATCTACGACAGCACGGACTCGGAGAACGACGAGGATGGCAACCTCTCCGAGGACAGCCTGCGCTCCGACAGCATGGACCATCGGGCGCACGACTCCAACGCCGACCGCTCCGACAATGAGATGTCCGACCTGGACCCGGGGCACTTCATCGACCGGGCACGCGCGCTGATCCGAGAGCAGGCCCTGGCGGCGGAGGGCGAGAAGCCCAAGCGTGACGGGCCCCGGGGGAAGGTGCAGGGCCCCGCCTCCATGCATGTGGAGGGCAAGCAGCTGGCCGAGACGCTGAAGCAGGAGCTGAACACGGCCATGTCGCAGGTGGTGGACACGGTGGTCAAGGTGTTCTCCAAGCCCCCCCGCCCGCTCCCTCAGGTCTTCCCCCCACTGCAGATGCCTAGAGACCGCTTCGCCGTCAATGGGGAGAACCCCAACTTCCACACGGCCAACCAGCGGCTGCAGTGTTTTGGTGACGTCATCATTCCCAACCCCCTGGACACCTTCAGCAGCATGCAGGTGCCCGGCGCCAATGACCAGACGGAGGCGCTGCCCTTGGTGGTCCGAAAGAACTCCGCTGACCAAACCCCTTCAGTGCCCACCCCTGGGGGGCACCACCACCCCTCCCTGCACCCTTCCCCACTGTCTGCCACAGTGGGCTTCACCCCGCCTTCTTTCCGCCaccccttccccctccctctcatGGGTTACCCGTTTCAGAGCCCTCTGGGCACCCCCTCGGGCGGCTACCCAGGGAAGGACAGGGCCTCCCCGGAGTCCCTGGACCTGTCGAGGGAGACCACGAGCCTACGGACCAAGATGTCGTCGAATCACATGAATCACCGCTCCTGCTCGCCCACGCACCCCGGCAGCACGGCAGAGGGCTTGTCTCTGTCACTCATTAAGTCGGAGTGCGGGGACCTGCAGGACATGTCGGAGATCTCGCCATGTCAGATGAGTTTTTCCTTGACAAGATGTTCCCAGATTCAGGAAGGACTTTCACCAAATCACTTAAAGAAGGCGAAGTTGATGTTCTTCTACACCAGATACCCCAGCTCCAACATGCTGAAGATGTTCTTCTCTGACGTGAAGTTCAACAGGTGCATCACATCCCAGCTCATCAAGTGGTTCAGCAATTTCCGTGAGTTCTACTACATCCAGATGGAGAAGTTCGCCAGGCAAGCCATCAACGACGGAGTGACCGGGGTGGAGGAGCTGAGCGTGAGCCGGGACTGTGAGCTGTACCGCGCGCTCAACATGCATTACAACAAGGCCAACGACTTTGAGGTAGGACCCTGTCTGGTTTCTCGTGCGGAAGGAGTCGGCCTCAGAGCTGTAGAGACGGGGCCTGAATGTCCCTCTGCAGTGCTGTTGCCCAGACGCctccatttgtttattcattag

Function

symbol description
prox1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including lymphangiogenesis; negative regulation of DNA-binding transcription factor activity; and neuromast development. Located in nucleus. Is expressed in several structures, including digestive system; mesoderm; nervous system; pleuroperitoneal region; and trunk vasculature. Orthologous to human PROX1 (prospero homeobox 1).

NR:

description
prospero homeobox protein 1 isoform X1

GO:

id name namespace
GO:0021884 forebrain neuron development biological_process
GO:0030239 myofibril assembly biological_process
GO:0043433 negative regulation of DNA-binding transcription factor activity biological_process
GO:0048885 neuromast deposition biological_process
GO:0048886 neuromast hair cell differentiation biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K20211 PROX1; prospero homeobox 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003754 True 2172 mRNA 0.60 3 17275642 17291950

Neighbor

gene id symbol gene type direction distance location
AMCG00003753 NA coding downstream 46461 17205313 ~ 17229181 (-)
AMCG00003746 NA coding downstream 228617 17043634 ~ 17047025 (-)
AMCG00003748 NA coding downstream 261868 16998780 ~ 17013774 (-)
AMCG00003747 kif26b,LOC102197193,LOC107097817 coding downstream 281620 16993119 ~ 16994022 (-)
AMCG00003740 kif26b,kif26ba,LOC107682227,LOC107693166 coding downstream 382763 16883972 ~ 16892879 (-)
AMCG00003757 rps6kc1 coding upstream 177390 17469340 ~ 17513471 (-)
AMCG00003758 NA coding upstream 222566 17514516 ~ 17526657 (-)
AMCG00003756 NA coding upstream 264007 17555957 ~ 17565405 (-)
AMCG00003762 LOC106608035,LOC105008239 coding upstream 286421 17578371 ~ 17599733 (-)
AMCG00003766 NA coding upstream 352594 17644544 ~ 17668847 (-)
G2972 NA non-coding downstream 16099 17257937 ~ 17259543 (-)
G2973 NA non-coding downstream 20877 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 233093 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 278038 16996790 ~ 16997604 (-)
G2834 NA non-coding downstream 687349 16588069 ~ 16588293 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding upstream 643890 17935840 ~ 17940712 (-)
G3257 NA non-coding upstream 1117920 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 1147151 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 1253403 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 1583632 18875582 ~ 18878573 (-)
AMCG00003751 NA other downstream 135260 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 404167 16868332 ~ 16871475 (-)
AMCG00003734 NA other downstream 647241 16607410 ~ 16628401 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 1683912 15515673 ~ 15591730 (-)
G2500 NA other downstream 2464311 14810786 ~ 14811331 (-)
G3181 NA other upstream 650627 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 843429 18135379 ~ 18142681 (-)
AMCG00003782 ctsb other upstream 854710 18146660 ~ 18152381 (-)
AMCG00003825 NA other upstream 2069868 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 2133013 19424963 ~ 19425366 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012227 prox1a coding NC_007128.7 CM002901.2 32822588 ~ 32865788 (-)
grasscarp (Ctenopharyngodon idella) G261251 NA non-coding CI01000062 null 3846434 ~ 3852053 (-)