AMCG00003755


Basic Information

Item Value
gene id AMCG00003755
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17529397 ~ 17552735 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003755
CGCAGATCCCGGCAGAcctgcgcacatctgcgctcCGCCAACGCCAGCAAATATCCTCGGCGAGCTGCGAGAGGCTTTCCGGTGTGTCTGTGCGCACAAACGCGCTGCTCCCACCGCACCGGCGCTCAGCATGCAGCGGCCCGGCCACTGAACCCGCCGAGGAGCCCCGCAGCGGACACGCAGTCGCCCGGCCTCGCCGCCTCCTCGGGTCAAAGGGCAGCCTGTGTTTAGTGATGTATTAACATCAGTCCGGCGCTCCTAAGATCTGCCCTGTTTTTCTCCCTGGCTGGAGAGAGGAATGTGTGATTGAGGAAGCGAGGACAGCAGAAAACGCCAAGAGGCTCTCAACGCGCAGAAGCCAATGCAGCAAGGATGACGTCCAAGGCGCAGGTTTTGTACGACTTCACAGCTGAACCTGGAAACAATGAGCTGACCGTGAAAGAGGGCGAAACAGTTACCATCACCAACCAGAGCATCGGTGGGGGCTGGGTAGAAGCACAGAACTCCAAAGGAGAGGTTGGACTGGTTCCAGAAGATTACATTGAGGTGAAAGCTTCTGGGGGAAATGCCATACCagacttttcagtttttgacAACTTCTCATCCACAGCTTCCAACAGCCACACTACCAACAATCAGgtGGATGTTGCTGGCTGCACAGCTCAGCCCGATACACCAGACACCCCAGCCCCGGcgtccgctccctccactgagACCAACAACAACACCGACCCCTGGTCCGCCTGGAGCCCCGCCGTCAACGCCTCAAACAACTGGGGAGGGCAGACCGAGAGCTCGGACGCGAATAAGCACAACGCTGGTGGGAACTGGAGCTCGGGCCAACAGGGGCATCCCCAGGCCTACCAGGGCCCAGATATCTATCCCTATCCGTACCTAACTGACTATACAGGTGCCACCGATGATGACGAATGGGACGACGATTGGGACGAGAAGCCCGCAGGGGGGGGCGTCGAGTTGGAGGCGGGAGAGGGGGGGCCCGGGGCCCGTGCCGGGACGCACGGCTCGTCCATGAAGATCGCCCTCAACAAGTTCCCTGGCTTCAACAAATCTGGACCAGAACTCTACCTTCTTTGCAAACAGCCGCTGAAGACGAAGGAGAAGATCCCGATCTATATGGGAGAAGTTGGTCCGGTCTGGTCGTACCCAGAGTCACAGGTAGACTGTGTCGTAGCCGACCCTAAGAAAGGGACAAAAATGTACGGCTTAAAGAGCTACATTGAATATCAAGTTACTCCGAGTACGACAAACAGGCCCGTCAATCACAGATACAAGCACTTCGACTGGCTGTACGAACGGCTTCTGGACAAGTTTGGCTCGGCTATTCCCATCCCGTCCCTGCCAGATAAGCAGGTCACAGGGCGCTTCGAGGAGGAGTTCATCAAGATGCGTATGGAGCGGCTCCAGGGCTGGATGACCAGGATGTGTCGGCACCCCGTCGTCTCGGAGAGCGAGGTCTTCCAGCTGTTCCTCAGCTTCAAAGACGAGAAGGATTGGAAAACGGGAAAGAGAAAAGCGGAGAAAGACGAGACGGTGGGGGTGATGATATTCACCACAATAGAGCCGGAGGCCCCTGATCTGGACCCCGTTGAAGTGGAGCAGAAGTGCGAGCTTTTCAGCAGATTCACCAAGTCCATGGACGACGGGGTGAAAGACCTCCTCAATGTGGGGCAGGAGCACTGGAAACGGTGTACAGGACcgtTGCCAAAAGAGTATCAGAAGATTGGAAAAGCACTACAGAATCTCTCTAACGTTTTCAACAGCAGTGGATACCAAGGGGAATCTACGCTGACAGACGCGCTGACTGAAGCCGGAAAAACATATGAAGAAATTGCTGTTTTGGTCGCCGAACAGCCAAGAAAAGACCTTCATTTTCTGATGGAGACGAACAATGAATACAAAGGGCTTTTGGGCTGTTTTCCTGACACAATTGGTGTTCACAAGGCCGCGATAGACAAACTGAAGGAGGCTGATAAAATGGTGGCGACAAGTAAAATCAATCCTCAGGAGAAGCTGACCATGGCGAAGCGTTTGGGCACCATGTCTTACGCACTGCAAGCTGAGATGAATCATTTCCACAGCAACCGAATCTATGACTACAACAGGGTGATGCGTCTGTACCTGGAGGAGCAGGTGAAGTTTTACGAGATGaTTGCGGAGAAACTGAGGCAGGCCCTCAACCAGTTTGCCACTTTGTAGAGACGCCCCCTGAGACAGACGCAATTCCAGAGCACACCAATCCAACAGCAGTCTTctgttattctttattctttcctttttttttttttttttttttaaga

Function

GO: NA

KEGG:

id description
K17923 SNX9_18_33; sorting nexin-9/18/33

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003755 True 2318 mRNA 0.54 20 17529397 17552735

Neighbor

gene id symbol gene type direction distance location
AMCG00003752 NA coding upstream 324215 17161740 ~ 17205182 (+)
AMCG00003749 hpcal1,LOC106607246,LOC105015955,LOC107565203 coding upstream 421119 17104264 ~ 17108278 (+)
AMCG00003750 NA coding upstream 425149 17078085 ~ 17104248 (+)
AMCG00003745 hnrnpu,LOC107689318,LOC107729300,LOC107693167 coding upstream 499769 17015664 ~ 17029628 (+)
AMCG00003743 NA coding upstream 652152 16872643 ~ 16877245 (+)
AMCG00003759 NA coding downstream 23999 17576734 ~ 17577808 (+)
AMCG00003760 dnajc27,LOC106605409,LOC107733160,LOC107752776,LOC107674103 coding downstream 65689 17618424 ~ 17622439 (+)
AMCG00003761 NA coding downstream 76551 17629286 ~ 17640891 (+)
AMCG00003763 NA coding downstream 185507 17738242 ~ 17778447 (+)
AMCG00003767 NA coding downstream 234533 17787268 ~ 17788969 (+)
G2967 NA non-coding upstream 272947 17254266 ~ 17256450 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding upstream 319356 17208035 ~ 17210041 (+)
G2861 NA non-coding upstream 595377 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 930068 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 932028 16593264 ~ 16597369 (+)
G3265 NA non-coding downstream 886071 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 992249 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 1392847 18945582 ~ 18946131 (+)
G3373 NA non-coding downstream 1397019 18949754 ~ 18950254 (+)
G3375 NA non-coding downstream 1398517 18951252 ~ 18971124 (+)
AMCG00003744 NA other upstream 486803 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 1489757 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 2211169 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 2662639 14851752 ~ 14866758 (+)
G2440 NA other upstream 3109665 14418516 ~ 14419732 (+)
G3047 NA other downstream 129082 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 579184 18131919 ~ 18142633 (+)
G3108 NA other downstream 593925 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 1719230 19271965 ~ 19397686 (+)
G3751 NA other downstream 3996466 21549201 ~ 21549533 (+)

Expression


Co-expression Network