AMCG00003762 (LOC106608035,LOC105008239)


Basic Information

Item Value
gene id AMCG00003762
gene name LOC106608035,LOC105008239
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17578371 ~ 17599733 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003762
atgttgaaaaaaataaacaaatataccaACAAGCTGAATCAGATCCGAGATTATATCCTGGAGGGTGTGAGGACACAGCTACTCACTAATCGTCGGTGGTGGTGGTCTTGTTGTCTTTCAGGAGTCTGTGGTTGCTGTGGGGCTTTGAGACCCCGATACAAGAGGCTTGTGGACAACATCTTCCCTGAAGACCCAGAGGACGGCCTGGTTAAAGCCAACATGGAGAAGCTGACGTTTTACGCGCTCTCTGCCCCGGAGAAACTGGACCGCATTGGGGCCTACCTGTCGGAGCGGCTCTGTCGCGATGTGGCCCGGCACCGATACGGGTACGTGTGCATTGCGATGGAGGCCCTGGACCAGCTGCTCATGGCCTGCCACTGCCAGAGCATCAACCTGTTTGTGGAGAGCTTTCTGAAGATGGTGCGCAAGCTGCTGGAGGCTGACAAGCCCAACCTGCAGATTCTGGGCACCAATTCGTTTGTGAAGTTCGCCAACATCGAGGAGGACACTCCCTCGTACCACCGCAGCTACGACTTCTTCGTGTCGCGCTTCAGCGAGATGTGCCACTCCAGCTACGAGGACCCTGACATTCGCACCAAGATCCGCATGGCCGGCATCAAGGGGTTGCAGGGGGTGGTACGGAAGACGGTGAATGACGAGCTGCAGGCCAACATCTGGGACCCGCAGCACATGGACAAGATTGTGCCCTCGCTGCTCTTCAACCTGCAGCAGGGGGAGGGCACTGAGAGCCGCTCACCCTCGCCCCTGCAGGCcacagagaaggagaaggagagccCGGCGGAGCTGACAGAGCGCTGCTTCAGAGAGCTGCTTGGCCGAGCCGCCTATGGCAACATCAAAAACGCTGTCAAGCCTGTCCTCATGCACCTTGATAACCACGCTCTATGGGAGGGAAAATCCTTCGCCATTCGCTGCTTCAAAATTATCATGTATTCCATCCAGTCCCAGCACTCCCACCTGGTCATACAGCAGCTCCTCGGGCACCTGGACGCCAACAGTAAGAACTCGGCCACCATGAGGGCGGGCATCGTGGAAGTGCTGTCGGAGGCCGCTGTCATAGCAGCCAGCGGCTCGGTTGGCCCCACGGTGCTGGAAGTGTTCAACACCCTGCTCAAGCAACTGCGCCTCAGCGTGGACTACGAGCTCACTGGCTCCTATGACTCCTGCGGCAACATCGGCTCCAAGATCATCAAGGAGCACGAGGAGCGGCAGTTGCAGGAGGCCGTCATCAAGACCATCGGCTCTTTTGCCAACACGCTCCCCACCTaccagaggtcagaggtcatgcTGTTCATCATGGGGAAGATCCCTATTCCGGGGATGCACCCTTCACTCGGCTCGGCCAATTCAGGGTTTGAGGGAAGCCGGATGATACAGGTCATGCTCCTGAAATCACTGTTACAGGTGACCACAGGGTTCCAGACCACTAACATGCTGACCGCCCTGCCCAGCTCGTTCCTCGACCCCCTGCTGTCCTTCACCCTGATGGAGGATGCTGAGATACGTCTGCTGGTCCTGGACATCCTGGTCAGCCTCATTGATCGCCACGACAACCGCCCCAAGTTCTCCTCCATCAGCATCATATCGGACATTTCTGTGCTCAAGCTGAAAGCAGACAAGTGCTCTCGACAGGACAACCTCTTCATGAAAAAGCACTCTCAGCAGCTCTACCGGCATATCTATCTGGCCTGCAAGGAGGAGAACAGCGGGAAGCCGCACTTTGAGACGCTGTTTGCCCTGTTGGCTGTCATCAGCATGGAGCTGGCCAAcgaggaggtggtggtggaCCTGATCCGATTGGCGCTGGCCATGCAGGACCTGGCTCTGGCCAACGAGGAGAGTCTGCCCGTGTACAACCGCTGTGCAGTACTCGAGACGCGGTTGAAGGAAGTCCCGTACATGCTGCCCGAGGATGTCTTCATTGAGAAGCCCAGGATCCCGAGGGCCCTGGACAGGCCAGAGGGAGAGGTGCTGTTCCTTCAGAGCAAGATCACAGAGGTCCTGGGAGGAAGCGGCTACAACACAGACCGACTGGCCACACCCTACATCCCGCAGCTCACAGAAGAGGATCGGCTGTCCAAGAGGAAGAGCATCGGAGAGACCATCTCCTTGCAGGTGGAGGTGGAGTCCAGGAACAGTCCTGAGAAAGAGGAGAGAACGCCAGCGGAGGAGATCACCTTTGAGTCGCTGAAGAAAGCCATCGTGGACAGTGTGGGGAtggaggagcaggagagggagcGCAGGAGGCAGGTGGTCGAGAAGTTCCAGAAGGCCCCCTTCGAGGAAATAGCAGCCCACTGCGGTGCCCGAGCTACTTTGTTGCAAAGCAAATTGAATCAGATCTTTGAGATTACCATCAGGCCTCCACCCAGCCCCTCGGGCACCATCACCGCAGGGTACGGGCAGACGCAGAGCCGCTCTGTGCCGGTGTACGAGATGAAGTTTCCAGATCTGTGTGTCTACTAGTGGCTCTCCAGAGGTCAGAGGCCCTCCTCCCCAGCAGCCAGTAGAGACGAGAGGGGCAAGCGGTGTGGAATAACGCAGCAAGGCCCCCCAGATCAGGAACAGTGTTTTTCCTagcctcctgttcctcctccagACAGCGCCCTCTTTGCTGGACCTGCCCCGGCACGAAGCTCATTCTCCATTTGCACTGTGAAGTTTTCTTGGACGGCCCCCTCGCCCCTTTGCCCAAGTCAGTTGATGTCACTGCCGCTGCCTGGTGGTGTGAAACAGTGTCCCATGGAAACCCGTCACCAACAGAGAGGAGCTCCTGCTGTGATCGTGGCAACCACCTACGCCTTGGCCGTGGAGAATTCTTGGACAGTGGGataaataaccacaataaaACAGGAACTCACACCATCCCAACCTTTTCTAAAACCCCAGCCCTTATTTGTTGTGTATTGGAGGTGAAACACTGCATCCTGACACCACTCACAATTTTCTTCAAGGGAAGAAACAAATAAGCCTAAATATGGTCgggtttaaacatttattgtaatgttAAAGACACTGAAGACCATACGAATCTTACATTTTAAGTTAGATGTGACGATGTGTCTCCCCAGTGAATCCTCTTGTCTTGGTAGACCTGTCCGTCAGTCTGCACTCctcaccccccacacacacactccctgcaCAGGACCGGCCGCTGCTCCTGAAGTAGTTTTAGAAAAGCTGTTGCTATTTGAAAAGCTAATCGCCCTGCACCGAGACACCGCAATACGCGTCCCTGATGAGTGGGTGTCAGTTTAATCGCTGTCTGTTCGTTTTCTCCAAATAAACTTGCCAGGTTCTCAAGGAAAATGTTGCTCGTAAAGTGTTGCttgtcaggaaaaaaaacaactgaacttGTTACCTTTTAAAGCAGCGTTCAGTAATGTCAGGAACTGTGGATAAGGGAGACATGCTGAAATAACAATTGCTATTTTTGTTCCCGGTTGTGTAGCTGAAAATCATTGGTATGCATCTAagacaattttgtttttctggtttgtgtGCTTTCAGGAATGTTTTAGAAATGCTGGAAAATGTTCtagaatgcatattttaaaaaacaaaacaaaaaaacaatagaataaCCAATCAAAATGCATGAGGACCATTGTGGTTGTATGGCAGTGGATTGGTTCTGGGGTCTGAGAGCATGTGATTGGTCCAGACACTGTACGAGTGAATTCTGCTGTTATGGGGTCTTAATTCTGGAAATGTTAATCAATCACTGTCTATGAATATGAACAGATTAACACTTATTTATGGCATCCGTTCCctctgttagtgtgtgtgtgaagactTGGCCCAGCCAGGATTACAGCAGGAGGTCTCATCAGAGGCAGGGAATGGGACAGATCTGAAAAGCTCTTACAGTAATGGCATTCAGCACTGATTGTTGGAGAGTGAGGAAGCTTTTATTTTACTGGTGGCAATTGTAGAAAGACAtagtgtgtctgtttgtgtgtgttgcctcTTAGACACAATTCCCAGACCGAAGCAGCTGAGCAGCATAGTGTTCACTGTAAAGTCAGATTTACGTGGGGTGTGCGATTGACAGTGTGTGGGGAGCCAGTTGTGACAAGACCATAAATACGCTAGAGTGAGGAGTTGGTGTTGCCGTTGCAGTGAAAGCACCGGGGCTGCACAGAGCTGTGTCCCCAGACTGTAAAATTAATTTCCtgcctttcatttaattatgacCCATACTTTCTTCTGATCATAGATTACAAAGCATCAACGCTAGCAAAGTTATACAAAGCATGGGAACCATCTTTCTAGGGCCAACATCAGAGATTATAAAAtggccttaaaataaatatatatataatcctaaatatattgtatatattttgcaataaacacatttatggTCTCAGTGCCCAGTACAGTTCCATTCTACACTGACTCCACTCACTTGTGAAATTGCCTTTTCTAAACATTTCTGTCAGTGAAATGTACTTTAAAGATAAAGAGAAATTATGAAGGGAGAAGAGACCCACTGTTAAGTCAAGATTTAGGttgtagtttttaattaaagaagtaACCGAATGTGTACAGTACacacgtttgtgtgtgtgaatgtctgagtttgtgtctgtgtgtgttttaagttgTTCCTGCTGTTGTTAGCTTCCAATTTTATGTTTGGTCTGtagattgtgtgtttgtattaatgTGTCGGTGGCTTTTCTTAGTCAGATTTCTAGTGTCTAgaatttttttgtaatttgtgtatCGTCTCGTAGCAGAAAAGGAAGCTTTGCCGTGCGTCTGAAGCCGTTTCCACTTTTAACTGAAGTGCTTCTTTCTCTTTCGCTGTTACTTCACCTGGGTGGTGTCTCTCATCCCGTTGTTTTcagttgtgtgtatgtatctattCTCACATTGTCTTCAACATTAATCcttttttaaaagtttatattttctatgcaatcatgattattattttagatgAGAGAACTGAACTCAAGCTAGTCTGCCCCAGTGAATGCTtgacattgtaaataaatactgtttaagtgtaatgttaaaaataaacagatatatttttaaaccacatttCAGTTAAACTAATGCAAACTATGCTATGGTTGAAGCAGATTTGCATGACTAGCCATCAGTGATGCCAGGTGTTTTGAAACTGAAAGATAGTGGCGTTGGTTAGGTGCTACACATTTTTCCAGCATCGCattgaaagaataaaaactGCACAAGGAGGCTGTGGTAGTACACTGAATGGCTATGCAGTTGCCTTAAGGAGTAACAAAGGCAACCTTAAATATATAACCtttatatagtgtttttttaCTAGATGTATACTTGCAGCCGTCAGTCGTCATGacagtatgcatttattataagCTATGTGCAATCACATACATACTCACTAGAGAATGTGgctcaaacatttatttttaaaatagaaagatTGCTCAAGATTTAGACAAGCGCCAATACTGTGAATTGTACAGCTCCGAGGAGCAGCCCAAGACAGGTCATGCTGTTTTATGCAAACCTCTGTGGGATGTTTTTAGCAACACCTTTTTATCCCCACTTCCAACTCCGCACACTTTCTCTCCAGATTTCGAACTGTATTGCATCAATACTCATTGCTGGCAGGGTGAAACAATGGACAAAGGTCATGTGACGCTGGAGAAGCTTAACTGACAACAGCTGAGCTCAATCACAGGTGAAATTATACAACCGAATGTGTggaaaggggggaggggttaaATCCACTCTCCTGCATCTAGCAATGCACCCAACTGCTTTTCAATAGGTTTCTTCACTTCTCCTCAGTTTTACACAGCCCTTAACAGTATGTAGTTATGCTATAGTTATTTTGTAACAGAGGCGGgggaaatgtgaaaaaacatgtattttgtttgtgaaagCTGCTCAAATAGGGGGCACCACAAAGTCCAGTGCAGCTCTTAATGTCAGTATGTAAGCGATTGTGCCGTCGGTTCTGCATGTGTAACCTGTGCATAGGCCTTCCTGTGTGTGTTAGAGTTTTGTTTGTTGCGTTCCTGTGCAGTTTGGCCATGTTGTTGTCCTCAGTGtgcaaactgaaacaaactgtGGAAAGATAAGAACCAGCACCGATGTTCGATGGCTCATTGTGGCCAAAGTAATTGATCTTAGAATCTCAATATTGCCGGCCAGTGTCTCTTCATTACAAGATAACATTATGGTAGTATGGAAATCCTGTGACAAAATGCTGTTGTAATCAAAGTTAACAATcaccatttgtgttttttgttttgttgttttttgtatttatcataGCCTCAATGAGGGAACCTTTATAGATGATAGACTATAAATAGGGCTAACATTTGCACCCCAGTCATCCCtgttcaatttagtttttactgAATTTACTCGCATGTGATTTCTTTCAACATGCTTACattctttgttttacatttgttcttcaaaatattttttaaatagtatcttatttttgttattatgtcACTGTGgctgttttaaatacttatgttcttatggcaCTGAACTGTGTGTTAAAAAGCGTTGTAATGAAGGCATGAGGATTGCCAGCTCTGCCTTGGTTTCCTGACAATGAACGTCTGCAGTATGTGGCGTGTTGTGAAGActtatatttgtttctcttgtgAAAATGGTGTTCTCTTTCATTGTTCTGCTCATGCTGTTTCAGCAGGGATACTACAGTGTACCCCCCTGAATTGCCACAGCTAATGAAGCAAAAATACCAAATCTTTGATGGATTGTTGTTGGTTCAGTTCAGAACTAGCAGATGCCCAGCGATCTGACGGCTCGTGGCTTGCTCACCATGCTCCTACAAGATTATCTGAGGAAGGTTGAGCAGTGCCAAAACTGAGTTCAGACACATCCCCACTCCTGAAAATGTACACGTtgtaaatgaaagaaagaaaaacaaatatatgcacTATCAAAGTGATCTCTTAAGGTTTGGTTTTTCTTCTCCAGAGCAAATTGTCCTCCTCATTTTCTGACCATACCTGAAAGCTTAGAGCTGTGCGTCTCGTGGGAGATCAAACACTAACGGAGAATtgcactgtatgtatttgtgtcacTTTAACGGCCCTGGAATCTGAgtgggctgtttttttttggagaTCAGGAGAGCAAGAAGGGGAGGGTAGTTTGTAACATAGTGGAAAGCTCTTGAGAGAGCCGTCCTGTACAGTTTCCCTGGCTGGCTCATTGATGCAAACGTGTTGATACTGACCCTGAACTGGACATACTGAAATACACCTGCGTTGTCTGTctctttcagtttgttttctgccAGGCTGTGGGAGGAGGATCCTGTCAGCATGTCTGATTTAACAGGGAGAGGAAGCTGACAGATCAGTGGTGTTTGTTAACCTATTTAggtgttaatttacatttggTTCTGTTTTGATTATTCAGTCTCACATTGCAGGTGAGACCATCACGGTTTCTCAGAGCTAGGTGTAATACCCTTTCCTTTGTTGGATTACTGTTACTTAGAAAACACAATCTCCAAAGTAATACCCCCCTGCTGTAAGCAAATGCGCCAGCAACACTAATCCATTTAACCTCAATGGCTGAAGCCGAATTGCATTGAAAACGGCATCGATCGCAAAATCGCTTCAGGAAGCTGCAGAGACGAACCCCGGCTGCCCACTAATGCAGGAGTAACTGAAATTACTCTGTGACTCGGCTGTAATGAACAAGAAAGGCGCTGGTGTTATACGCGGATGTGGCCAGGAGCCTGTCTGATGGATTGGGTTTTAGTCTCGCCCGTCTCCCTCAGTGAGCTCTGAACAATCGCAACAACGGTGGCCCTTAGATGGAGAGGTGTTATTGCGCTTGACCATTATTAGATTTGTACTGCTGTACCCTTATTCTGCCTTTGCCCATAAAAGTGCCAGTGTAATGGAGTGGTGGAGGGAATGGAGGCCTTGTCACCCCTGAGTGAAGAAACGTCAGGCGCACTGCGGCACTTCCCCGATTCCTACAACTCCCCACAGGAGGTCTTAGTTCTCCCCCTATTGAATTGGCTCAgttacaaaacatacattaaaaaggaCTGTCGGGCAAACATGTTCCAGATATTCACGATAACAGCAATTTGATTCCAATCGTTGGtgctttttggttgtttttattttttataaagtatattttaaagtattaaatgtaaaacttgCCATCTCCCTTTGTAggttaaaaaatattatgttaCATCTTCCCATGAAGGTCTGTCATAGGGGTTTTTGACTTACTGATAATGGGCTGTAACCTGAACAATTAACAGAATTGTTGTGAAGCTAATAGTGCAATGTAATCtaaaggtttttttgttttaaatgtatgttagcAGTATGATGTATCATTATGCTTGTGGACAGTTTCACGCCCCCTCTGTGTGCATTGTTACTTCAGTTCCTTGGCAGTGTGTTTTGTACCAGAACGGACTGTAAACGGAGACAAGAtttatgggaaaaaaaa

Function

NR:

description
PREDICTED: protein EFR3 homolog B isoform X3

GO: NA

KEGG:

id description
K21842 EFR3; protein EFR3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003762 True 8505 mRNA 0.46 22 17578371 17599733

Neighbor

gene id symbol gene type direction distance location
AMCG00003756 NA coding downstream 12966 17555957 ~ 17565405 (-)
AMCG00003758 NA coding downstream 51714 17514516 ~ 17526657 (-)
AMCG00003757 rps6kc1 coding downstream 64900 17469340 ~ 17513471 (-)
AMCG00003754 prox1a,LOC107592773,LOC107752784 coding downstream 286421 17275642 ~ 17291950 (-)
AMCG00003753 NA coding downstream 349190 17205313 ~ 17229181 (-)
AMCG00003766 NA coding upstream 44811 17644544 ~ 17668847 (-)
AMCG00003765 NA coding upstream 80713 17680446 ~ 17703226 (-)
AMCG00003764 NA coding upstream 179746 17779479 ~ 17784590 (-)
AMCG00003768 NA coding upstream 190206 17789939 ~ 17791057 (-)
AMCG00003770 LOC107585532,LOC107675519 coding upstream 275414 17875147 ~ 17876586 (-)
G2972 NA non-coding downstream 318828 17257937 ~ 17259543 (-)
G2973 NA non-coding downstream 323606 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 535822 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 580767 16996790 ~ 16997604 (-)
G2834 NA non-coding downstream 990078 16588069 ~ 16588293 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding upstream 336107 17935840 ~ 17940712 (-)
G3257 NA non-coding upstream 810137 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 839368 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 945620 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 1275849 18875582 ~ 18878573 (-)
AMCG00003751 NA other downstream 437989 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 706896 16868332 ~ 16871475 (-)
AMCG00003734 NA other downstream 949970 16607410 ~ 16628401 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 1986641 15515673 ~ 15591730 (-)
G2500 NA other downstream 2767040 14810786 ~ 14811331 (-)
G3181 NA other upstream 342844 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 535646 18135379 ~ 18142681 (-)
AMCG00003782 ctsb other upstream 546927 18146660 ~ 18152381 (-)
AMCG00003825 NA other upstream 1762085 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 1825230 19424963 ~ 19425366 (-)

Expression


Co-expression Network