AMCG00003766


Basic Information

Item Value
gene id AMCG00003766
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17644544 ~ 17668847 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003766
CTCCGTTGGTCTAAACTGACAGTGCGAATGTGCGTCGCGGCGTCTGATTGGCTGGGCGCAACGGGCTGACcgtgtgacgtcagcggcagcatTGGGCAGGCGGCCCAGCGAGAGAGACGACAAAGTCCGGTAACATCCTCCGCCGCCGCTCGGAGGAGACGCAGAGTACCGAGCAGTGGCTGCCCCAGCCCGCTGAACTGAGCCCGACAGACGCCGCTCTCCGGCCTCCATGGAGCCGTGCTGACACGTCTTGTGACGCGACGCAAACCATGAACTACGTGGGGCAGCTGGCGGGGCAGGTGCTGGTGCAGGTAAAGGAGCTGTACCGCGGCTTGAACCCCGCCACGCTGTCAGGCTGCATCGACGTCATCGTGGTGCGCCAGCCCGACGGCAGCCTGCAGTGCTCCCCCTTCCACGTGCGATTCGGGAAGATGGGCGTGCTGAGGTCCCGGGAGAAAGTGGTGGACATAGAGATCAACGGGGAATCTGTGAGTCTGCACATGAAGCTCGGAGAAAACGGGGAAGCTTTCTTcgtgaaagagacagagaatgaTAAGGAGGTCGTTCCCTCATACCTGGCCACCTCCCCCATTGTGTCTCAGGGAGCAGCTCTGATGGAGGCGCAGCTGGGGAAGGGGTCAGCCCGAGGGTCAGAGCCGGGCGCTCTGTGCCCCACAGTGGCCTCGGCCCTCCTGGCACATTCCGGGGGGGACAGCCCCCAGGGGAACTGCTCCgtgaagaagaggaggaaacGGAGGCGGAAGTCCAAGTTGGACAGTGTGAAGAGGGAGGACAACGGGGAGGACTCGGAGGACGACGACATGTTCCCCATTGACATGAGTTCGGACGAGGAGCTGGGAACTGAACTGGGTGACCACAGCAGGACCTCGTCATGTGATGATGCAGCTATGGGCAACTGTTCTGGAAGCGCCTTCATGCAGAGCCAGGTGTACGCACGCTCGGACGGAGAGTGGTCACCTGTTCAGAGCCCCAGTGGATCGCGACCTTCGACCCCGAAGAGTGACTCAGAGCTAGTCACCAAAGGCTCTGACAAAGGCAAAAAGAACAACCCAGAGATGCTGTGGGCATGGGGAGAGCTGCCCCAAGCTGCCAAGCGCTCGTTTTCCTCCAAATCAGAGCAGTCGGTGCTGGTGAATATCCCAGTGTCTGAAAGCACTCACTTCAGGGTGATCTCGGGGGACTCTCCCCCGGAGACACGGGACAACAGCACCCCACCTCCCGCCCTGTTCGGCCCTGCGGGGCTGTGTGAGAGCGAGGCTGCGGGGGGGCTGGAGCTGGAGGCCCTGGTGGCCGGAGCTGCTGGTGCCACCTCTCGGCTGCACCTGGAGAGCGAGGATCCGAGCCCCTGCACAGGGCAGCCCCGCGCAGCCAGCAAAACTGACTCGCCCTCCAAAAAGAAAGATAAGAGGAGCCGCCACCTGGGAGCGGATGGCGTTTATCTGGATGACATCACAGAACTAGAGCCTGAAGTGGCCGCTCTGTACTTCCCTAAGAGCGATGGCGGCGGCCCGGGCAGGAGCTGCTCAGAGAGCGGAGCCCGCTCTGCCAACCAGTCTCCACAGTCCGTTGGCAGCTCGGGGATGGACAGCGGAGTGGAGAGCTTCTCTGACCAGCTAGGCGACCTGCCATCCATCACCATTTCCCTGTATTACAACTGGACCACAGCTGCCCCTCTGATGTTAGCAATGCAGGCCTTCCAGAAGCCCCTGCCCAAGGCGACAGTAGAGAACATTATGAAAGAGAAGATGCCGAGGAAAGGAGGGAGGTGGTGGTTCTCCTGGAGGGGCCGCAACAGCAGCGCGAAGCCGGAATCCACATCTGAACAAGGACTTGGTGTGAAAGGAGAGCAGACTGGCAACATGGATTCTGCAGGCAGGATGAAGGATGAGTCTTCGTCCAGCGATGAAGATCATAGGGCCGCCAGGAGCGCTGACTCCACACAGGCCGAGCCCGTCTCACTGTCCTCAGCTGGCGTCTCGTACAAGAAGACTCTCCGGCTCACCTCTGAGCAGCTGATGAGCTTGCAGCTGAAGGACGGGCCCAACGACGTGGTCTTCAGTGTTACCACCCAGTACCAGGGCACCTGTCGCTGTGAGGGCACCATCTACCTGTGGAGCTGGGATGACAAGATAGTCATCTCCGACATCGATGGCACCATCACCAGGTCTGACACGCTGGGCCACATTTTGCCGACGCTTGGTAAAGACTGGACTCACCAGGGGATTGCCCGGCTGTATCACAAAGTCAGCCAGAACGGCTATAAGTTCCTGTACTGCTCGGCTCGTGCCATTGGGATGGCGGACATGACCCGGGGGTACCTGCACTGGGTCAATGAGAGGGGCACCATGCTACCACAGGGTCCCGTGCTGCTCAGTCCCAGCAGCCTGGAAGTCATCGAAAAGAAACCAGAGAAGTTCAAAATCGAGTGTCTGACGGATATAAAGAACCTGTTTTTTCCAAACCCCCAGCCTTTTTACGCTGCTTTTGGAAATAGACCAACAGATGTGTATTCATATAAGGAAGTGGGCGTTCCACTGAACCGAATTTTCACCGTTAACCCAAAAGGAGAACTCCCAGTTCACCTACTGGAGGGAGCAGCTGCCGTCTGTGGAGAGTCCCGACATCCACATCGAGTCCAGCTGAGGCTGGGGCTGAAGGACGCACGGCCGTCTGCTTTTCACACGTCC

Function

GO: NA

KEGG:

id description
K15728 LPIN; phosphatidate phosphatase LPIN

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003766 True 2708 mRNA 0.60 19 17644544 17668847

Neighbor

gene id symbol gene type direction distance location
AMCG00003762 LOC106608035,LOC105008239 coding downstream 44811 17578371 ~ 17599733 (-)
AMCG00003756 NA coding downstream 79139 17555957 ~ 17565405 (-)
AMCG00003758 NA coding downstream 117887 17514516 ~ 17526657 (-)
AMCG00003757 rps6kc1 coding downstream 131073 17469340 ~ 17513471 (-)
AMCG00003754 prox1a,LOC107592773,LOC107752784 coding downstream 352594 17275642 ~ 17291950 (-)
AMCG00003765 NA coding upstream 11599 17680446 ~ 17703226 (-)
AMCG00003764 NA coding upstream 110632 17779479 ~ 17784590 (-)
AMCG00003768 NA coding upstream 121092 17789939 ~ 17791057 (-)
AMCG00003770 LOC107585532,LOC107675519 coding upstream 206300 17875147 ~ 17876586 (-)
AMCG00003776 NA coding upstream 221136 17889983 ~ 17896915 (-)
G2972 NA non-coding downstream 385001 17257937 ~ 17259543 (-)
G2973 NA non-coding downstream 389779 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 601995 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 646940 16996790 ~ 16997604 (-)
G2834 NA non-coding downstream 1056251 16588069 ~ 16588293 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding upstream 266993 17935840 ~ 17940712 (-)
G3257 NA non-coding upstream 741023 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 770254 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 876506 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 1206735 18875582 ~ 18878573 (-)
AMCG00003751 NA other downstream 504162 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 773069 16868332 ~ 16871475 (-)
AMCG00003734 NA other downstream 1016143 16607410 ~ 16628401 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 2052814 15515673 ~ 15591730 (-)
G2500 NA other downstream 2833213 14810786 ~ 14811331 (-)
G3181 NA other upstream 273730 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 466532 18135379 ~ 18142681 (-)
AMCG00003782 ctsb other upstream 477813 18146660 ~ 18152381 (-)
AMCG00003825 NA other upstream 1692971 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 1756116 19424963 ~ 19425366 (-)

Expression


Co-expression Network