AMCG00003770 (LOC107585532,LOC107675519)


Basic Information

Item Value
gene id AMCG00003770
gene name LOC107585532,LOC107675519
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17875147 ~ 17876586 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003770
ATGTGGGGGATGCCCAAGTCGAGATATGCGGACTGCAACGGCTCGGAGGCCAGTGAGGAGACGGAAATCGTGGTTAATATCGGGGGAGTGAGGCAAGTGCTCTACGGGGATGTGCTCAACCGGTACCCGGAGACCCGGCTCGCCGAGTTGGTGAACTGCTCCTCGGGCGGCTATGACGCGATTTTCTCTCTGTGCGACGACTACGACCCAGGGAAAGGGGAATTCTACTTTGACCGGGACCCGGACTCTTTCAAGTGCATCCTAGAGGTGTACTACTTCGGAGAGATCCACATGAAAAGGGGGATCTGCCCCATCTGTTTCATGCACGAAATGGAGTTCTGGAAAATCGACGCCAGCTTCCTGGACGAGTGCTGCAAGAGCAACCTGAGCGAGAAGAAAGAGGAGCTGGATGAGATCGCAGACAGGGTGAAGCTGATTCTGGACGACTTGGAAGGGGACCCGACGGCCACCCGCTGGCAGAAGTGCCAAAAGTTTCTGTGGAAGCTCATGGAGAAGCCAGAGTCCTCCTTGCCGGCGCGCGTAATCGCCATCATGTCTTTCTTCTTCATTCTCATCTCCTCCGTGGTGCTGTGCTTGGGCACCATCCCAGAACTGCAGGTGGAGGACACGGAGGGGAACCACGTGGAGCACCCGACTCTGGACGCCATCGAAACCGCGTGTATAGGCTGGTTCACAGTGGAATACATCCTGCGTCTGGTCTCCTCTCCCAATAAACTCCGCTTCGCCTTCACCTTTATGAACATCATCGACGTGCTGGCGATCATGCCCTTCTACGTGAgcctgaccctcacctacctcGGGAACAAGATGATGGAGCTGAGCAACGTGCAGCAGGCGGTGCAGGCGCTGCGCATCATGAGGATCGCCCGGATCTTCAAGCTGGCTCGCCACTCCTCGGGGCTGCAGACTCTCACCTACGCCCTAAAGAGGAGCTTCaaggagctggggctgctgctcATGTACATGGGGGTGGGCATATTCGTCTTCTCTGCCCTCGGGTACACGATGGAGCAGAGCCACCCGGAGACGCTGTTCAAAAGTATCCCGCAGTCCTTCTGGTGGGCCGTCATCACTATGACCACGGTGGGCTACGGAGACATCTACCCGAAGACCACCCTAGGCAGGTGCAACGCCGCCATCAGCTTCTTGTGCGGGGTGATCGCCATCGCCCTGCCCATCCACCCCATCATCAACAACTTTGTCATTTACTACAACAAGCAGAAAGTGCTGGAGACGGCGGCCAAGCACGAGCTGGACCTCATGGAGCTGCACTCGTCCGCGCGCCGCCCGGGGTCCGAGAAGAAGCGCAGCGCCGGCGCGCGCCTGTGGGACGGCAACATGAAAGCGTCCCACAGCGACACGTACATCCCCCTGCTGTCCGACTCCGCGTTCAGGACACGGCTGCAGAGCTGTAAATAA

Function

NR:

description
PREDICTED: potassium voltage-gated channel subfamily F member 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04899 KCNF1, KV5.1; potassium voltage-gated channel subfamily F member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003770 True 1440 mRNA 0.58 1 17875147 17876586

Neighbor

gene id symbol gene type direction distance location
AMCG00003768 NA coding downstream 84090 17789939 ~ 17791057 (-)
AMCG00003764 NA coding downstream 90557 17779479 ~ 17784590 (-)
AMCG00003765 NA coding downstream 171921 17680446 ~ 17703226 (-)
AMCG00003766 NA coding downstream 206300 17644544 ~ 17668847 (-)
AMCG00003762 LOC106608035,LOC105008239 coding downstream 275414 17578371 ~ 17599733 (-)
AMCG00003776 NA coding upstream 13397 17889983 ~ 17896915 (-)
AMCG00003777 NA coding upstream 94226 17970812 ~ 18000814 (-)
AMCG00003778 LOC107594834 coding upstream 127585 18004171 ~ 18027626 (-)
AMCG00003780 NA coding upstream 228502 18105088 ~ 18124295 (-)
AMCG00003781 LOC103364986,LOC107735240 coding upstream 280272 18156858 ~ 18161968 (-)
G2972 NA non-coding downstream 615604 17257937 ~ 17259543 (-)
G2973 NA non-coding downstream 620382 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 832598 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 877543 16996790 ~ 16997604 (-)
G2834 NA non-coding downstream 1286854 16588069 ~ 16588293 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding upstream 59254 17935840 ~ 17940712 (-)
G3257 NA non-coding upstream 533284 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 562515 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 668767 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 998996 18875582 ~ 18878573 (-)
AMCG00003751 NA other downstream 734765 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 1003672 16868332 ~ 16871475 (-)
AMCG00003734 NA other downstream 1246746 16607410 ~ 16628401 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 2283417 15515673 ~ 15591730 (-)
G2500 NA other downstream 3063816 14810786 ~ 14811331 (-)
G3181 NA other upstream 65991 17942577 ~ 17944942 (-)
AMCG00003784 NA other upstream 258793 18135379 ~ 18142681 (-)
AMCG00003782 ctsb other upstream 270074 18146660 ~ 18152381 (-)
AMCG00003825 NA other upstream 1485232 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 1548377 19424963 ~ 19425366 (-)

Expression


Co-expression Network