AMCG00003772 (LOC104943415)


Basic Information

Item Value
gene id AMCG00003772
gene name LOC104943415
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17899908 ~ 17916063 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003772
CGCACTTCCGGGTGCGCCGCCGGAATCCCTCCGACTGGAAAGCGTGTTTGGCTTTTACAACGTGGGCCAGCGCTGGAGGACGGGCGAGATTGCGCTGAACATTTCCCAAGTTTACGTCTATTATTATGAATGAGCTGCTTTACTGAGGGGCTTCAGGATGCAGATTTCCAGTGTTAACGACGTGAAGATTTATAATTTGAGCTACGGAAAATCATTGCCGGAGTGGCTCTCAGACAGGAAGAAACGGGCTTTACAGAAGAAAGATGTCGACATCCGACGCAGGATCGAGCTCATCCAGGACTTCGAGATGCCCACGGTCAGCACGTCCATCAAGGTGTCCCGTGATGGGCAGTATGTGCTGGCAGCTGgCACCTACAAGCCTCGGATTCGATGCTACGACACGTATCAGTTGTCTCTGAAGTTCGAAAGATGCCTGGACTCCGATGttgTGGCCTTTGATGTTCTGTCAGATGACTACTCCAAGCTGGTCTTCCTGCACTGTGACCGGTATGTGGAGTTTCATTCGCAAAATGGCTATTATTACAAGACCAGGATCCCCAAGTTTGGCAGAGCCTTCTCCTACCACTACCCCTCGTGTGACCTGTACTTTGTGGGAGCCAGCTCAGAGGTGTTCAGACTGAACTTGGAACAAGGAAGATTTCTAAACTCCTTACAGACGGATGCTGCGGAGAACAATGTGTGTGATATCAACCCTGTGCACCACCTGTTTGCCGCCGGATCAGCTGAGGGGAAGGTCGAATGCTGGGACCCGAGGGCCAGGAAACGTGCTGGCATCCTGGACTGCGCTTTGAGCAGCGTCACCGAGAACACAGAGGTGGAAGGCCTGCCCTCTGTGTCCTGCTTGAAGTTCAGAGGGGCTCTGCACATGGCCGTGGGGACGAGCACTGGACAGGGGAAGGTCTTCTCCTCCATAGAGCCAGAGCACAACATCAACGACGTCTGCCTGTATCCCAGCTCTGgAATGCTTTTTACAGCCAATGAAGATCCCAAAATGAATACCTACTACATTCCtGCTCTGGGTCCAGCCCCTCGCTGGTGCTCCTTCCTGGACAGCCTGacggaggagctggaggagaacCCGGAGAGCACGGTCTATGACGACTACAAGTTCGTCACCCGGAAGGACCTGGAGAACCTGGGCCTCGTGCACCTGATTGGCTCCCCACTACTGCGAGCCTACATGCATGGCTTCTTCATGGATATCCGGCTCTATCATAAGGTGAAGACCATGGCCAACCCATTCGCTTACGAAGAGTACCGCAAGGATAAGATCCGCCAGAAGATCGAGGAGACGAGGACTCAGAGAGTGCAGATCAAGAAATTGCCCAAGGTCAACAAGGAGCTGGCGCTGAAGCTGATggaagaagatgaagatgcTAAGcagctgaagaagaagaagggaaagAACACTCCCAACATCCTCAGCGACGATCGATTCAAGGTGATGTTCCAGAACCCAGACTACCAGGTGGACGAGATGAGCGAGGAGTTCCGGCTGCTCAACCCCATCGTGTCAAAGGTCACgcagaagaggaagaagaagctGCGCTTGCTGGAGAAGCAGGAAGCGGCTCAGCAGgaggatgaggaggagccTGAGGGCAAACCCAGCGACGAGGAGAGCTCCGAGAGCTCCGACGACGACAAGAGCTGGgtggaggaggtgagggagcaGCGCAAGCAGCTGTACCTGGAGGAGAAGGCGCGTCGACGGGAGCGCCGGCTGCAGGACCGGCACACCGAGCTGGAGCCGCGCTTCTTCGAGATCAAGGCCGGCGAGGAGTTCCGCAGCTTCAAGGACGCGTCCCGGAAACAGAAGCTGCAGAAggtcACACTTGAGGACCGTCTGAAGCTGGAGGAGAGCTCTGGAGCCATGGCTGTGTCTGATAACACCGTGGGCAGTAAGCAGGTCACTTTCACACTGAAGAAGTcggagcagcagcagcggcagcaggAGCTGGAGCGGCAGCACCACCAGGAGAGGAAGAACCTGCGGCGGGCCGCCGGGCATCTCCGCACTGGCCCCCCCCGTGGTGGGGGGCGGGGAAGGGGGCGGGGCGGCATGCGAGGCAGGGGCCGTGGCCGGGGACACTTCTGAGGAGTAGTGTCCTACCACTGCACGGCTCCACAGCTGACCTGGCCAGACCCTTCCTGGCGAGACTGCCCAGTTACTGTGCAAAAACCTTAGCGGCTGAGTAGCTTCAGTGTCTGGGCTCGTTGTGTGCGTTTAGTGTTGttcttatgatgatgatgattaaagCTGCATGGGTTGGGTACAGGTGCCCATGGTTGTAGGGAAACGCGCAGGCCTCCACTCCTCCCCAGCAGGTAATACGGATCCTGCGGTGTGGAGGTACTGTGTGCATCGACCCCGAGCTCAATCTCCAGGAGCACGAACTTCACTCCTCTTCACGTCAGCCGTGTAATGCAGCTGTGCTTCAGGGCTCTGGTCATGAACTCTGACCTCTGTGCGAGAGCTGCCACTGGCTGCCCCAGCCACTGTGCCAGCAGACCTTGATGTTATCGCtcctctggttttgttttgaatgggaAGTGTTCCCTTGTACAGACAAAACAACTGTATTCCCGATTCAAAGCTTTAGAAAGTAGGACCATCCTTCCTACTGAAGCactaaatcaattacatttttaaaacactttac

Function

NR:

description
PREDICTED: nucleolar protein 10-like

GO: NA

KEGG:

id description
K14788 NOL10, ENP2; ribosome biogenesis protein ENP2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003772 True 2684 mRNA 0.56 20 17899908 17916063

Neighbor

gene id symbol gene type direction distance location
AMCG00003773 LOC106571177 coding upstream 11065 17881204 ~ 17888843 (+)
AMCG00003769 NA coding upstream 102440 17796461 ~ 17797468 (+)
AMCG00003767 NA coding upstream 110939 17787268 ~ 17788969 (+)
AMCG00003763 NA coding upstream 121461 17738242 ~ 17778447 (+)
AMCG00003761 NA coding upstream 259017 17629286 ~ 17640891 (+)
AMCG00003774 LOC107589773 coding downstream 17799 17933862 ~ 17938898 (+)
AMCG00003775 NA coding downstream 26524 17942587 ~ 17950139 (+)
AMCG00003771 NA coding downstream 38235 17954298 ~ 17970590 (+)
AMCG00003786 NA coding downstream 278220 18194283 ~ 18199528 (+)
AMCG00003787 tram2,LOC106607554 coding downstream 286374 18202437 ~ 18208797 (+)
G2967 NA non-coding upstream 643458 17254266 ~ 17256450 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding upstream 689867 17208035 ~ 17210041 (+)
G2861 NA non-coding upstream 965888 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 1300579 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 1302539 16593264 ~ 16597369 (+)
G3265 NA non-coding downstream 522743 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 628921 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 1029519 18945582 ~ 18946131 (+)
G3373 NA non-coding downstream 1033691 18949754 ~ 18950254 (+)
G3375 NA non-coding downstream 1035189 18951252 ~ 18971124 (+)
G3047 NA other upstream 215920 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 857314 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 1860268 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 2581680 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 3033150 14851752 ~ 14866758 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 215856 18131919 ~ 18142633 (+)
G3108 NA other downstream 230597 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 1355902 19271965 ~ 19397686 (+)
G3751 NA other downstream 3633138 21549201 ~ 21549533 (+)
G3771 NA other downstream 3829787 21745850 ~ 21760630 (+)

Expression


Co-expression Network