AMCG00003774 (LOC107589773)


Basic Information

Item Value
gene id AMCG00003774
gene name LOC107589773
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 17933862 ~ 17938898 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003774
GGCCGGTTCCAGCTGGTGTGTTGTCACGGAAACCAGCAGGATATAAATACCCCGGGCTGCGGCGCCGGCTGCGTATTCACTTCAGTCAGTCGCATAGAGAGGCTAGAGGGGACGGGGGTGCaggtttatttcatttcaagaatTCTGGTCTAATGGACAAAATCTTCGTAAATGCTTTTTAAGAATACTCGCTTCAGTAAAGCACATAACGGCTTCTTGGAAGGCCCGGATTTTGCCTTTTATCTGAAAGTGTTCAATTTCAAGGGCGAACCTCCTTGGCTGTAAAGCTGATCGCAGCTCTGTGACGATCCCATCTCTTTCTTATTCATTTTTACATAGCTTCTCCAGTGACTTGATTAAATCAagcattaaagaaaatgaacagctACAGCCCTGCCGAGTTCGACCTCACTTTCCTGGATGAGGGCTTCAGTGCCAGAGACATCGTGGAGCAGAAGATTAATGAGGTGTCCACATCGGATGACAAGGATGCCTTTTATGTGGCAGACCTGGGGGACATCTTGAAGAAGCACCTGCGCTGGGCCCGAGCCCTGCCACGCATCACCCCCTTCTACGCCGTCAAGTGCAATGACAGCAAGACCGTCGTCCGCACCCTCGCCACCCTGGGAGCCGGCTTCGACTGTGCCAGCAAGTTAGTGGAGTTGGTTTTGAAAGATGAGCAGTTTGCTCCAGTGACTGATCCCAGTAAAGGGGATCCTCCAGTAAACATCACTGACGACTTCACTTTCTCCCCACAGAATGAGATTCAGCTGGTGCAGAGCATTGGCGTCGCCCCAGAACGCATCATCTATGCCAACCCCTGCAAACAGGTGTCCCAGATCAAATATGCAGCGGCCCACGGTGTCCAGAAAATGACCTTTGACAGCGAGGTGGAACTGATGAAAGTGGCACGCAGCCATAGCAATGCAAAGCTCGTTCTCCGGATTGCAACCGATGACTCCAAAGCCGTGTGCCGTCTGAGTGTGAAGTTTGGAGCGACGCTGAAGTCTTCCCGGTTGCTGCTGGAGAGGGCGAAGGAGCTGGGGGTGGACATCATTGGTGTGAGCTTCCATGTTGGGAGTGGCTGCACTGACCCTGAGACGTACTCCCAGGCCATTTCTGATGCTCGCTGTGTCTTTGATATGGGGGAGGAACTCGGGTTCAACATGACACTCCTGGACATCGGTGGGGGGTTCCCCGGGTCAGAGGATGTGAAGCTGAAGTTTGAAGAGATCACTGCTGTGATCAACCTTGCCCTGGACAAGTACTTCCCAGTGGACTCTGGCGTGCAGGTGATCGCAGAGCCGGGGCGCTACTATGTGGCGTCGGCCTACACCCTGGCGGTCAACATAATTGCTAAGAAGGTGGTGATGAAGGAACAGTCTGCCTCTGATGATGAAGACGATGGCACAAATGACAGGACCCTGATGTATTACGTCAACGATGGAGTTTATGGCTCCTTCAACTGCATCCTTTATGACCATGCTCATGTCCTGCCCATGCTGCACAAGAAACCCAAGCCAGATGAGAAGTTCTACTCCTGCAGCATCTGGGGCCCGACCTGCGATGGCCTGGACCGCATTGTGGAGCTGTGTGACATGCCAGAGCTGCAGGTTGGGGACTGGATGCTGTTTGAGAACATGGGTGCCTACACTGTGGCAGCTTCTTCCACCTTCAATGGCTTCCAGAAACCAGACATCCACTATGTGATGTCCAGGCCTGCATGGCAACTGATGCAGCAGGTCCGGGAGCAGGGCTTGACTCTGCCTTTGGGGGAGCTGTGCCCCAGCACTCTGCCCTCCTGCTGTGCCTGGGAGAGTGGGGTGGAGCTGCCTGCGTCCTCCTGCTCCACTCGCGTGCTCTAA

Function

NR:

description
PREDICTED: ornithine decarboxylase 1-like

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01581 E4.1.1.17, ODC1, speC, speF; ornithine decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003774 True 1865 mRNA 0.54 12 17933862 17938898

Neighbor

gene id symbol gene type direction distance location
AMCG00003772 LOC104943415 coding upstream 17799 17899908 ~ 17916063 (+)
AMCG00003773 LOC106571177 coding upstream 45019 17881204 ~ 17888843 (+)
AMCG00003769 NA coding upstream 136394 17796461 ~ 17797468 (+)
AMCG00003767 NA coding upstream 144893 17787268 ~ 17788969 (+)
AMCG00003763 NA coding upstream 155415 17738242 ~ 17778447 (+)
AMCG00003775 NA coding downstream 3689 17942587 ~ 17950139 (+)
AMCG00003771 NA coding downstream 15400 17954298 ~ 17970590 (+)
AMCG00003786 NA coding downstream 255385 18194283 ~ 18199528 (+)
AMCG00003787 tram2,LOC106607554 coding downstream 263539 18202437 ~ 18208797 (+)
AMCG00003785 mrpl19 coding downstream 337560 18276458 ~ 18279829 (+)
G2967 NA non-coding upstream 677412 17254266 ~ 17256450 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding upstream 723821 17208035 ~ 17210041 (+)
G2861 NA non-coding upstream 999842 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 1334533 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 1336493 16593264 ~ 16597369 (+)
G3265 NA non-coding downstream 499908 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 606086 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 1006684 18945582 ~ 18946131 (+)
G3373 NA non-coding downstream 1010856 18949754 ~ 18950254 (+)
G3375 NA non-coding downstream 1012354 18951252 ~ 18971124 (+)
G3047 NA other upstream 249874 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 891268 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 1894222 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 2615634 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 3067104 14851752 ~ 14866758 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 193021 18131919 ~ 18142633 (+)
G3108 NA other downstream 207762 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 1333067 19271965 ~ 19397686 (+)
G3751 NA other downstream 3610303 21549201 ~ 21549533 (+)
G3771 NA other downstream 3806952 21745850 ~ 21760630 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location