AMCG00003779 (ctsb,catb,LOC107381178)


Basic Information

Item Value
gene id AMCG00003779
gene name ctsb,catb,LOC107381178
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18131919 ~ 18142633 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003779
CAAGGAAATGTGACTGTGCATTTCTTTGGAAGCTCTCTCAGGTTGCAGGGttttcaggtgtgtgtgtgctgtgaatAGCACTGTGTGACTCCACCTGCATTTCTAGAAAAACACTCAAGTCATCCTGCTCGAAGTAGAGACAACAGCTCCTGTCCTGCACGCTGTGACTGTGCTCCTCATTGCCCTCCGCCATGGCTTTAACGCTGATCTTGATTGGACTTGTGAGTTCACAGCTTTACACAAGCCTGGGCTCAGCCAGTGACCAGGTGGCACTGCAGGGGGGCAATGCCATAGGGATTAACAGCACTGTTGTGTTGCTGACAGTAAGCCCCTCCTTCACCCCAGTGGCCAACCCTGACTCCAGACGCAAATTTGAGGAGGGAGGGCAGTCGCAGGAGCAGGACTCTCAGAATGAAGGTCAGACGCAGGGGCACGACTCTAATGAAGATGTTCAGGCTGCGGACCACGACTCCGGAATGCAGGAGCAGGGACCCGTCACCCCGGCCAAGAGTCTCCTGGCAGCTATTATTATACCTGTGGTGCTGGGGATACTCCTGATCGTTGCAATTATTCTGGgtgTACTTCTCTATAAGAGGTTCtccaaccccccccaaaaaaagTCTCTGGAAACGTTCACAAAGAATCCGATCCCAAAGGCTGAGGAAAACATCTATGCGGAGAACCCGGGCTACATCAACATCGCCTCTTTTCCCATTGAGAACTTGGGGATCCCGGCGACGATCTGTGACTCGATCCCGCAGTGGTTCTGCCCACGCAGGAACCTGAAAAACCCTGGGGACAGTGAAGCACAGGTGTTTAGCACAGCTGTGGGCAGATCTGGCCCCGGAGAGTCACCGCTCTGCAGTCTGCAGTCTTACCGTCTTCACCCCAATCGGTGTTCCAGGAGTTGGCAGCCAGCCAGGAAGAAAGCCTACAGCGTTCCCTCCCAGGTGGAGCAGATCATGTCTGAGCTGTACAAGAATGGCCCTGTGGAGGGGGCGTTCACAGTGTACGAGGACTTCCTATTGTACAAG
>TU3792
CTGCCTGAACAAATGTGAGGATGGCTACACCCCTACCTACCAGCTGGACAAACACTATGGGAAGAAAGCCTACAGCGTTCCCTCCCAGGTGGAGCAGATCATGTCTGAGCTGTACAAGAATGGCCCTGTGGAGGGGGCGTTCACAGTGTACGAGGACTTCCTATTGTACAAGTCGGGCGTGTATCGGCATGTCACTGGCTCTGCAGTGGGGGGACACGCCATCAAGATTCTAGGCTGGGGGGAGGAGAACGGGACCCCATACTGGCTGGCTGCCAACTCCTGGAACACCGATTGGGGTGACAATGGGTTCTTCAAGATCCTGCGCGGGGAGGACCACTGCGGCATAGAGTCTGAGATCGTCGCTGGGATCCCCAAGCTGTAGGAGGAGATGCAGCAGATCGCAGCCCCCATCTCCCTCCTAAATATATGGCATGGTGAAGGACCCTGCTGTCTGAGTCTGTGGGTGGGGCTGgtgctgccccctgctggctCTGATCTGTAGTGCTTGACTATAGGAGTTGATTACTATCCACTGActgcttgctgctgctgctactacatCAATGATACAAATACTACAAATGTTTTTAgccacatttttagttttttaaaatttaCAAATCTACCACTatctttttaaagatgttttttgtgcttcattgttttactttcttttttaaattgttagtTTTGCCAACCATCAGAGTGGAGGATCCGTTGCAAGACTGGAGCGTCTGGTGGGCAGTGTTAATGCAGTGCCCCCGTGTGTTTGGATCAGTGCAGAGCGATTGTGCGCGTGCGTGCAAGTCACTAATGTGGACACAGGCTCTTACAATCCTCAATAAAGCAAACTAATAATAACTAACTGACAGTTCTTTCCCCAGGCACTTCCAGATTGGGTTGGTCTTTTGAGGCAGCCCACATGGCCTgactgtatgtgtttttttttcttgcttccTTTTATAAGTCTGAGCTGTTGCCATGTGCCAAGTCATTCAGTTCAGCAAGTTCAGTGTCACACCATGCACCTGAAGAAAGAGAAGTGTCCATGCTGGTGTTAACTTGTAGAAGcagaacacattttttcagGAATGTGGGGCTGCTGAGAGCCTGTGTTGGAAAAACTGTGAAAGAAGAGCAGGAATAGAAACCAGCCTTGCAGTTCTGCTGGTTCAGAGACGGAAGGCAGGTTCTGATGCACAAGATTTGGTTTGTCTTCCGTTGCCTCAGTCTGACAATATTCACAGACCTTGTTAATCAGTGCACTAgatattatgcattttaaagttcTGTTTTACTGAATCAATGATTAGCAATCTCATACTTATTAGGTGTCTCCCctcttttttgtaattatataaaaatgaaactgaagcttcggttgtacatatatattttttaaagctctgTTTACTTGATCTTGTAAGGTCTGGACCTGTTCTGCTGTACTAGTATCTGGTCCCATTGTATCACATTCCACTGTGTGAAAGAGTGCTGGATTAAAATGAAACCTGAATAAAGACTCATTGAATCTAAATCTGGGCTGGAGTTTAAAATTGCTTATTTCACCATTGTGCTCAGACAGGGTGCCTTTTCCCTTCTCCTTATTTTACCTAATGACTGGAAAGTTGGAAACGCGAAATCTGTGACGTTCCAG

Function

symbol description
ctsb Enables collagen binding activity; cysteine-type endopeptidase activity; and proteoglycan binding activity. Involved in several processes, including cellular response to thyroid hormone stimulus; collagen catabolic process; and proteolysis involved in cellular protein catabolic process. Located in extracellular space; lysosome; and perinuclear region of cytoplasm. Colocalizes with collagen-containing extracellular matrix. Implicated in diabetes mellitus. Biomarker of several diseases, including autoimmune disease of the nervous system (multiple); carcinoma (multiple); glioblastoma; intracranial aneurysm; and type 2 diabetes mellitus.
catb catalase; muconate cycloisomerase; chloramphenicol O-acetyltransferase type B

NR:

description
PREDICTED: cathepsin B

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003779 False 1034 mRNA 0.54 7 18131919 18139374
TU3792 True 1657 TUCP 0.45 5 18137755 18142633

Neighbor

gene id symbol gene type direction distance location
AMCG00003771 NA coding upstream 161329 17954298 ~ 17970590 (+)
AMCG00003775 NA coding upstream 181780 17942587 ~ 17950139 (+)
AMCG00003774 LOC107589773 coding upstream 193021 17933862 ~ 17938898 (+)
AMCG00003772 LOC104943415 coding upstream 215856 17899908 ~ 17916063 (+)
AMCG00003773 LOC106571177 coding upstream 243076 17881204 ~ 17888843 (+)
AMCG00003786 NA coding downstream 51650 18194283 ~ 18199528 (+)
AMCG00003787 tram2,LOC106607554 coding downstream 59804 18202437 ~ 18208797 (+)
AMCG00003785 mrpl19 coding downstream 133825 18276458 ~ 18279829 (+)
AMCG00003790 NA coding downstream 146267 18288900 ~ 18320263 (+)
AMCG00003798 NA coding downstream 205258 18347891 ~ 18348131 (+)
G2967 NA non-coding upstream 875469 17254266 ~ 17256450 (+)
G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding upstream 921878 17208035 ~ 17210041 (+)
G2861 NA non-coding upstream 1197899 16868299 ~ 16934020 (+)
G2836 NA non-coding upstream 1532590 16599058 ~ 16599329 (+)
G2833 NA non-coding upstream 1534550 16593264 ~ 16597369 (+)
G3265 NA non-coding downstream 296173 18438806 ~ 18439666 (+)
G3269 NA non-coding downstream 402351 18544984 ~ 18545538 (+)
G3370 NA non-coding downstream 802949 18945582 ~ 18946131 (+)
G3373 NA non-coding downstream 807121 18949754 ~ 18950254 (+)
G3375 NA non-coding downstream 808619 18951252 ~ 18971124 (+)
G3047 NA other upstream 447931 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 1089325 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 2092279 16024871 ~ 16039640 (+)
AMCG00003702 NA other upstream 2813691 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 3265161 14851752 ~ 14866758 (+)
G3108 NA other downstream 4027 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 1129332 19271965 ~ 19397686 (+)
G3751 NA other downstream 3406568 21549201 ~ 21549533 (+)
G3771 NA other downstream 3603217 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 3747890 21890523 ~ 21901865 (+)

Expression


Co-expression Network