AMCG00003784


Basic Information

Item Value
gene id AMCG00003784
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18135379 ~ 18142681 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003784
ATGAAGCCCTGCAGATACAGTGCAGTTGACAACGAGGACTACAGCTGTAGACTACAGGGGTCACCACAAGGGAGTGAAGAGGGACACTCACCCGACTTGTACAATAGGAAGTCCTCGTACACTGTGAACGCCCCCTCCACAGGGCCATTCTTGTACAGCTCAGACATGATCTGCTCCACCTGGGAGGGAACGCTACTGCAGAGCGGTGACTCTCCGGGGCCAGATCTGCCCACAGCTGTGCTAAACACCTGTGCTTCACTGTCCCCAGGGTTTTTCAGGTTCCTGCGTGGGCAGAACCACTGCGGGATCGAGTCACAGATCGTCGCCGGGATCCCCAAGCTGTAG
>TU3903
AATGAATCTGACTTCACAACAGGAGCAGCAGCAAACAGAATTACAGACCTGGAACGTCACAGATTTCGCGTTTCCAACTTTCCAGTCATTAGGTAAAATAAGGAGAAGGGAAAAGGCACCCTGTCTGAGCACAATGGTGAAATAAGCAATTTTAAACTCCAGCCCAGATTTAGATTCAATGAGTCTTTATTCAGGTTTCATTTTAATCCAGCACTCTTTCACACAGTGGAATGTGATACAATGGGACCAGATACTAGTACAGCAGAACAGGTCCAGACCTTACAAGATCAAGTAAAcagagctttaaaaaatatatatgtacaaccgaagcttcagtttcatttttatataattacaaaaaagagGGGAGACACCTAATAAGTATGAGATTGCTAATCATTGATTCAGTAAAACAgaactttaaaatgcataatatcTAGTGCACTGATTAACAAGGTCTGTGAATATTGTCAGACTGAGGCAACGGAAGACAAACCAAATCTTGTGCATCAGAACCTGCCTTCCGTCTCTGAACCAGCAGAACTGCAAGGCTGGTTTCTATTCCTGCTCTTCTTTCACAGTTTTTCCAACACAGGCTCTCAGCAGCCCCACATTCctgaaaaaatgtgttctgCTTCTACAAGTTAACACCAGCATGGACACTTCTCTTTCTTCAGGTGCATGGTGTGACACTGAACTTGCTGAACTGAATGACTTGGCACATGGCAACAGCTCAGACTTATAAAAggaagcaagaaaaaaaaacacatacagtcAGGCCATGTGGGCTGCCTCAAAAGACCAACCCAATCTGGAAGTGCCTGGGGAAAGAACTGTCAGTTAGTTATTATTAGTTTGCTTTATTGAGGATTGTAAGAGCCTGTGTCCACATTAGTGACTTGCACGCACGCGCACAATCGCTCTGCACTGATCCAAACACACGGGGGCACTGCATTAACACTGCCCACCAGACGCTCCAGTCTTGCAACGGATCCTCCACTCTGATGGTTGGCAAAactaacaatttaaaaaagaaagtaaaacaatgaagcacaaaaaacatctttaaaaagatAGTGGTAGATTTGtaaattttaaaaaactaaaaatgtggcTAAAAACATTTGTAGTATTTGTATCATTGatgtagtagcagcagcagcaagcagTCAGTGGATAGTAATCAACTCCTATAGTCAAGCACTACAGATCAGagccagcagggggcagcacCAGCCCCACCCACAGACTCAGACAGCAGGGTCCTTCACCATGCCATATATTTAGGAGGGAGATGGGGGCTGCGATCTGCTGCATCTCCTCCTACAGCTTGGGGATCCCAGCGACGATCTCAGACTCTATGCCGCAGTGGTCCTCCCCGCGCAGGATCTTGAAGAACCCNNNNNCACCCCAATCGGTGTTCCAGGAGTTGGCAGCCAGCCAGTATGGGGTCCCGTTCTCCTCCCCCCAGCCTAGAATCTTGATGGCGTGTCCCCCCACTGCAGAGCCAGTGACATGCCGATACACGCCTACAGGAGGGCGAAACAAacaaagagggggtggggaagACGTTGTCAGTCTTTTCTGAATCAAAACAGTTTTACTCCAGAGCCACTTTGTTATTTTCAGGCAGACTGTGCGCAGCTctggtccagtccagtctagtcagATTTGTGTCTCAAATCATCAGCACCTGATGAAATGAGATTACTCAAAAGTTCAAGGTTGAATGAAGCCCTGCAGATACAGTGCAGTTGACAACGAGGACTACAGCTGTAGACTACAGGGGTCACCACAAGGGAGTGAAGAGGGACACTCACCCGACTTGTACAATAGGAAGTCCTCGTACACTGTGAACGCCCCCTCCACAGGGCCATTCTTGTACAGCTCAGACATGATCTGCTCCACCTGGGAGGGAACGCTGTAGGCTTTCTTCCCTGCAAACGAGAGAAAAACAGGTGAAACAACCACTAAACACTTTAGAAAGATTTGCCCTTAAGAAAAGCAGAACTAGGGAACTAGAAGCAACTAGAGGTTCTGTATGAGAAGCAAAGACGGCAGTTGCTGTGTGGAGAGCACAGACAAACCTCAGACCTGTGTAGGAAGGAAGAACAAGACTCATGTATTGTCACACCACGCTCAGTTGAGTTTTTGGGAACCTGTTCTGAGGGCAGTGCTGAGGGCTGAGGGCAGAACAGGATGATGCATCGGATTGGTTATTTGCCTTTAGAAGGCAGGACATATATCATGCCTTTGATTGGGTTATTTACTTATTGAAGGCAGGActtacaagtaaaaaaaaaaaaaatggggggcaaaataatacaagaattTGCAAACATTATAACAGGCTGTATTCTGGATTGCAGCCAGAGGTCTTTCATGGC
>TU3907
AATGAATCTGACTTCACAACAGGAGCAGCAGCAAACAGAATTACAGACCTGGAACGTCACAGATTTCGCGTTTCCAACTTTCCAGTCATTAGGTAAAATAAGGAGAAGGGAAAAGGCACCCTGTCTGAGCACAATGGTGAAATAAGCAATTTTAAACTCCAGCCCAGATTTAGATTCAATGAGTCTTTATTCAGGTTTCATTTTAATCCAGCACTCTTTCACACAGTGGAATGTGATACAATGGGACCAGATACTAGTACAGCAGAACAGGTCCAGACCTTACAAGATCAAGTAAAcagagctttaaaaaatatatatgtacaaccgaagcttcagtttcatttttatataattacaaaaaagagGGGAGACACCTAATAAGTATGAGATTGCTAATCATTGATTCAGTAAAACAgaactttaaaatgcataatatcTAGTGCACTGATTAACAAGGTCTGTGAATATTGTCAGACTGAGGCAACGGAAGACAAACCAAATCTTGTGCATCAGAACCTGCCTTCCGTCTCTGAACCAGCAGAACTGCAAGGCTGGTTTCTATTCCTGCTCTTCTTTCACAGTTTTTCCAACACAGGCTCTCAGCAGCCCCACATTCctgaaaaaatgtgttctgCTTCTACAAGTTAACACCAGCATGGACACTTCTCTTTCTTCAGCAATGTGGGGCTGCTTAGAGCCTGTGTTAGAAAAACTGTGACGGAAGAGCAGGAATAGAAACCAGCCTTGCAGTTCTGCTGGTTCAGAGACGGAAGGCAGGTTCTGATGCACAAAGAGCTGAGATTTGGTTTGTCTTCCGTTGCCTCAGTCTGACAATATTCACAGACCTTGTTAATCAGTGCACTAGAtat

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003784 False 345 mRNA 0.57 2 18136533 18139469
TU3903 True 2387 lncRNA 0.45 2 18138812 18142681
TU3907 False 869 lncRNA 0.41 2 18135379 18142681

Neighbor

gene id symbol gene type direction distance location
AMCG00003780 NA coding downstream 11084 18105088 ~ 18124295 (-)
AMCG00003778 LOC107594834 coding downstream 107753 18004171 ~ 18027626 (-)
AMCG00003777 NA coding downstream 134565 17970812 ~ 18000814 (-)
AMCG00003776 NA coding downstream 238464 17889983 ~ 17896915 (-)
AMCG00003770 LOC107585532,LOC107675519 coding downstream 258793 17875147 ~ 17876586 (-)
AMCG00003781 LOC103364986,LOC107735240 coding upstream 14177 18156858 ~ 18161968 (-)
AMCG00003783 NA coding upstream 20945 18163626 ~ 18175704 (-)
AMCG00003789 NA coding upstream 67020 18209701 ~ 18215100 (-)
AMCG00003788 H3F3A,h3f3b,LOC105909691,LOC102696298,LOC107388308,LOC101073377,LOC107572204 coding upstream 73105 18215786 ~ 18220738 (-)
AMCG00003791 eva1a,LOC107593306,LOC107719434 coding upstream 80064 18222745 ~ 18226922 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding downstream 194667 17935840 ~ 17940712 (-)
G2972 NA non-coding downstream 875836 17257937 ~ 17259543 (-)
G2973 NA non-coding downstream 880614 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 1092830 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 1137775 16996790 ~ 16997604 (-)
G3257 NA non-coding upstream 267189 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 296420 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 402672 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 732901 18875582 ~ 18878573 (-)
G3374 NA non-coding upstream 807091 18949772 ~ 18950252 (-)
G3181 NA other downstream 190437 17942577 ~ 17944942 (-)
AMCG00003751 NA other downstream 994997 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 1263904 16868332 ~ 16871475 (-)
AMCG00003734 NA other downstream 1506978 16607410 ~ 16628401 (-)
G2665 crim1,LOC107679775,LOC107730201,LOC107602268,LOC107662656,LOC106601300 other downstream 2543649 15515673 ~ 15591730 (-)
AMCG00003782 ctsb other upstream 3979 18146660 ~ 18152381 (-)
AMCG00003825 NA other upstream 1219137 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 1282282 19424963 ~ 19425366 (-)
G3523 NA other upstream 1301335 19444016 ~ 19506753 (-)
AMCG00003893 NA other upstream 5386838 23529519 ~ 23533882 (-)

Expression


Co-expression Network