Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00003787 |
| gene name | tram2,LOC106607554 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 18202437 ~ 18208797 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| tram2 | Predicted to be involved in protein insertion into ER membrane. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane, translocation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in hatching gland; notochord; polster; and splanchnocranium. Orthologous to human TRAM2 (translocation associated membrane protein 2). |
| description |
|---|
| PREDICTED: translocating chain-associated membrane protein 2-like |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00003787 | True | 1466 | mRNA | 0.55 | 11 | 18202437 | 18208797 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00003786 | NA | coding | upstream | 2909 | 18194283 ~ 18199528 (+) |
| AMCG00003771 | NA | coding | upstream | 231847 | 17954298 ~ 17970590 (+) |
| AMCG00003775 | NA | coding | upstream | 252298 | 17942587 ~ 17950139 (+) |
| AMCG00003774 | LOC107589773 | coding | upstream | 263539 | 17933862 ~ 17938898 (+) |
| AMCG00003772 | LOC104943415 | coding | upstream | 286374 | 17899908 ~ 17916063 (+) |
| AMCG00003785 | mrpl19 | coding | downstream | 67661 | 18276458 ~ 18279829 (+) |
| AMCG00003790 | NA | coding | downstream | 80103 | 18288900 ~ 18320263 (+) |
| AMCG00003798 | NA | coding | downstream | 139094 | 18347891 ~ 18348131 (+) |
| AMCG00003797 | NA | coding | downstream | 139338 | 18348135 ~ 18349366 (+) |
| AMCG00003795 | hdac2 | coding | downstream | 189458 | 18398255 ~ 18419500 (+) |
| G2967 | NA | non-coding | upstream | 945987 | 17254266 ~ 17256450 (+) |
| G2945 | LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 | non-coding | upstream | 992396 | 17208035 ~ 17210041 (+) |
| G2861 | NA | non-coding | upstream | 1268417 | 16868299 ~ 16934020 (+) |
| G2836 | NA | non-coding | upstream | 1603108 | 16599058 ~ 16599329 (+) |
| G2833 | NA | non-coding | upstream | 1605068 | 16593264 ~ 16597369 (+) |
| G3265 | NA | non-coding | downstream | 230009 | 18438806 ~ 18439666 (+) |
| G3269 | NA | non-coding | downstream | 336187 | 18544984 ~ 18545538 (+) |
| G3370 | NA | non-coding | downstream | 736785 | 18945582 ~ 18946131 (+) |
| G3373 | NA | non-coding | downstream | 740957 | 18949754 ~ 18950254 (+) |
| G3375 | NA | non-coding | downstream | 742455 | 18951252 ~ 18971124 (+) |
| G3108 | NA | other | upstream | 50123 | 18146660 ~ 18152314 (+) |
| AMCG00003779 | ctsb,catb,LOC107381178 | other | upstream | 59804 | 18131919 ~ 18142633 (+) |
| G3047 | NA | other | upstream | 518449 | 17681817 ~ 17683988 (+) |
| AMCG00003744 | NA | other | upstream | 1159843 | 17032570 ~ 17042594 (+) |
| AMCG00003712 | extl3,LOC106571659,LOC106608199 | other | upstream | 2162797 | 16024871 ~ 16039640 (+) |
| AMCG00003828 | ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 | other | downstream | 1063168 | 19271965 ~ 19397686 (+) |
| G3751 | NA | other | downstream | 3340404 | 21549201 ~ 21549533 (+) |
| G3771 | NA | other | downstream | 3537053 | 21745850 ~ 21760630 (+) |
| AMCG00003853 | NA | other | downstream | 3681726 | 21890523 ~ 21901865 (+) |
| G3799 | med23 | other | downstream | 3713839 | 21922636 ~ 21923787 (+) |
