AMCG00003789


Basic Information

Item Value
gene id AMCG00003789
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18209701 ~ 18215100 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003789
CCGTTGCTCAGACGGCGCTTCACGCACTGACGGCACCGCACAGCCATGGCTTTCCACCGGACCCACGGGCTGCCCTTCCTCCCCGGGAACAGCTTCCCGGACCCCGCGAAGTCTGCATTCCACCGCTCCCAGACGCTGGACTACAAGAACGGTTACGCCCTGCCACGCCGGCCCCGCGTTGGCATTGGACAGGACCCCCTCCTGGCCAACCAGCTCTCCCAGTCTGAGCTGGACCAGCTGGCCAGCCTGTATCCTACACTGACCTACGGACAGCCTCGCCCCTCTGCCCCTTCAGACTTCATCCCTGCACATGTCGCCTTCGATAAGAAGGTGCTGCGCTTCGACGGGTATTTCCAGCAAGAGGTGCTGGGGTCGCCAGACGAGCAGTACCGTGTGCGGCCCGTGGTTGTCTTCTACTACCTGGAAGACGACAGCATGGCAGTGGTGGAGCCGGCCCAGGAGAACTCGGGGCTGCCCCAGGGGAAGCTCATCAAGAGGCAGCGGCTGCCCAAGAACGACCAGGGCGATCACTACCTCTGGACCGACCTGAACCGGGCCTCAGACTTGTGCATGTACGGCACCACCTACCGCCTCACACACTGCGACGCCTTCACGCAGGAGTTCCTGGAGAGCCAGGGGGTGGAGCTGAACGAGCCAGAGGAGATCCCTGCTGACCCCTACACTGAGCGCCGTGCCCAACCCCCGCGCTCCTACGTCACCCCGTCTGACTTTGACCGACTCAGGCAGTTCCTCACCATGGACCGCAAGGTCCTACGTTTCTATGCGATGTGGGATCACTCGGACAGCCTGTATGGGGAGACGCGGGCGGTCATTGTCCAGTACTACCTAGTGGATGACTCTGTGGAGATCCGTGAGGTCCACCAGCCCAACAGTGGCCGCGACCCCTTCCCTGTGTTACTGAGGCGACAGAGGGTGCCCAAACACACCCACGCCCCTGCTAGTGAGGAGAcaaACTCCTTCCCCACATGTGTGCTGGAGATCTCAGACCAGGAGGTGAGGGAGTATTTGTCACCCAGGGACTTCAAGATCGGAGAGACCATCACCATCATGGGCCACCGCTTCCTCCTGTACAATTGTGACAAGTTCACCCGTCACTACTACCAGGAGCAACTGGGGGAGACCCATCCGGCGCCCCTCGAGGTCAACAAGACACAGGGCGAGGAGGCCAAGATGGACATTCCTCCCTACAATGGGTTTGGTTCCCTGGAGGACTCACTGCAGAACTGCCTGTCTCTCATCCCCGAACCACCGAAGAAGGACCTGATTAAGATGTTGGAGAATGACCACAAAGTGCTGAGATATGAAGCCAGACTGGACTCCCAGAACCCCCAGGACAACGGCCGTCGCTTCGTCCTTTCTTACTACCTGGCAAACGACATGATCAGCATCTTTGAGCCGCCGGTCCGGAACTCTGGAATCATCGGGGGGAAGTTCCTGGAAAAGGCCCGCATCCCCAAACCGGGCAGCACCATGGATAATCCCATATACTATAGCCCAGCGGACCTCTTCATCGGAGCCAGGGTGGAGGTTTTCGGACATCGTTTCATACTAACAGACGCCGACAGGTACGTCTTGAACTATCTGGAGACGATCTCAGAGCACATCCCAGAAGAGACCTTGAGCTCCCTGCGCCAGAAGCTAAAGGACATGCCTGAGCACCAAAGCCAGCCCGatgAACCCCAGACAGTTtaaacacacagctgcagcacaCAGGAACACCGCCATGCTGGACTTGTGCTCTGCCCCTCTCCCCCTTCACTGCATCTCTCAATATCCTGATCCCACTTTCATTGCCTTCTGCCAAGGCCTGAAATAAACTGATTTGCTGTATTCGGAGGGGATTGTGTGTCATCAGTTTATTTAGTAGAGAAACATTTTACTTCACTTCAAGTGTTAAGGTTAAAAAGGGTCTGCTTTTACAAAACTGGGAATCTTTGTTCAGGTTTAAAGCAGAGCCCTCACTTCAAATTGAGTATCTCACGTGTGGCTGGACGGTGATGCAGGGGGGATTATGGACTCGCAGCACAGCGGAAAGGTCAACAAGGTGACCTGCTGAGTGTGACCTTTACCCTCAAACTGACTTCCCATGAAATTGAAACCTCtgcatgacaaaaaataaattccagtGAACTTGAA

Function

GO: NA

KEGG:

id description
K23029 EFHC1; EF-hand domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003789 True 2157 mRNA 0.56 10 18209701 18215100

Neighbor

gene id symbol gene type direction distance location
AMCG00003783 NA coding downstream 33997 18163626 ~ 18175704 (-)
AMCG00003781 LOC103364986,LOC107735240 coding downstream 47733 18156858 ~ 18161968 (-)
AMCG00003780 NA coding downstream 85406 18105088 ~ 18124295 (-)
AMCG00003778 LOC107594834 coding downstream 182075 18004171 ~ 18027626 (-)
AMCG00003777 NA coding downstream 208887 17970812 ~ 18000814 (-)
AMCG00003788 H3F3A,h3f3b,LOC105909691,LOC102696298,LOC107388308,LOC101073377,LOC107572204 coding upstream 686 18215786 ~ 18220738 (-)
AMCG00003791 eva1a,LOC107593306,LOC107719434 coding upstream 7645 18222745 ~ 18226922 (-)
AMCG00003793 NA coding upstream 32955 18248055 ~ 18275457 (-)
AMCG00003792 NA coding upstream 65023 18280123 ~ 18287152 (-)
AMCG00003794 hs3st5 coding upstream 106760 18321860 ~ 18384752 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding downstream 268989 17935840 ~ 17940712 (-)
G2972 NA non-coding downstream 950158 17257937 ~ 17259543 (-)
G2973 NA non-coding downstream 954936 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 1167152 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 1212097 16996790 ~ 16997604 (-)
G3257 NA non-coding upstream 194770 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 224001 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 330253 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 660482 18875582 ~ 18878573 (-)
G3374 NA non-coding upstream 734672 18949772 ~ 18950252 (-)
AMCG00003782 ctsb other downstream 57320 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 67020 18135379 ~ 18142681 (-)
G3181 NA other downstream 264759 17942577 ~ 17944942 (-)
AMCG00003751 NA other downstream 1069319 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 1338226 16868332 ~ 16871475 (-)
AMCG00003825 NA other upstream 1146718 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 1209863 19424963 ~ 19425366 (-)
G3523 NA other upstream 1228916 19444016 ~ 19506753 (-)
AMCG00003893 NA other upstream 5314419 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 5525485 23740585 ~ 23757796 (-)

Expression


Co-expression Network