AMCG00003792


Basic Information

Item Value
gene id AMCG00003792
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18280123 ~ 18287152 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003792
atgttTAATAAGAAACCAAGAAGAAACTTCCGCAGGAGGAAAAACGAATCGAGCGAGGAAGATGAGCGGACAGAGGAGGCTAACGCCGAGGTGCAGGTCTCGGCCTCCCCGCCACCGCCAAAGCAGCAGAGCCGCGGAGTTTCCTGCAGCTCGCTGCGGCACTCGCCCAAACCAAAGACGGGATCTGACGCCGAGGAAGATCAGCAACATTTACACGAGAATGACACGGAAACGACGGTGGATGAAACGATAATCGACACTGCTtcgaaaaatgaaaataataggACAAATCTGTTGAGTTTTGCCGATGAGAAAGAGGTGGACGGAGATGGCTTTCAAGTGAAGAAACTGACTGACAGGGCTGTGGTGTTCAAGGCAAGGCTGAAGCAAGACCGCAATCCTGCTGCAGTGACACAGTACACAGGCCAGGGGAGTCCCGTCCCCGTGACGGCATGCGAGCTAACTGAGGCAGCAGGAGAAGGATCTTCTGATGGAGATGATGGTGATGCATCCTCTGAGACTTCTGCTTCATCCAGCTCTCGAACCACTGGCCCAGATGACATCCCCGACTCTCGGCAGATTCAGGCTGCGAGGAAACGGCGCCAGCTGGCAAGAACAGGGGGTGACTACATTCCTCTGGATACCACGCAGCGCGGCAGAGCAGAGCTGaggggtgaggaggaggaggaggtagaGGACAGTGAGGATGAACCCGATGATCACGAGCGCAGAATCCCTTTTGCACCCAAACCCAAATCCCTGAGGCAGAGGATGGCTGAAAAGATGGGCGAAAGAGGTGAGGGTAGTGGTGGGAGTGACAGTAACAGTGAGAGCTCATACGGACAGGAAGATGAAGATCTCTGGGAGGAACAACAGATCGGGAAAGGAATCAAGAGACCTCAGAAAGGTGTGGTGGCTCCTGTGGTGGGGAAgcaagtgaaagtgaaagttgATCCCTCTGCATCCCTTTGTCCTGTGAGTCTGGATATTATAAAGAAAAGACTTACAGAAAAGCTGGAGTCCCTGAGGGAGGTGCATCGGGCTCACGAGGCTGAGCACCGGAGAATGCAGCTGGACATGGAGAGCGCCAGGGCGGccctgcagcagctggaggaCACGACTGCTGATCAGTGTTACCGCTTCTATAAAGACATGAAGCTGTATGTCCAGAATCTGGTGGACTGTCTTACTGACAAGATTGTGATCATTGACCGAGTGGAAGCGGAGCTGCACTTGCTGCTGAAAGAAAGGGCTGAAGCTCTGTGGAGTATCAGGAGGGAGGCAGTCAGGGAGCAGGCCTCTTCCCTTCAGCAGCTCACCTTGATGGAGGTCCTGGCAGGCCAGGGCAGGAGCAGGGCAGCGCTGAGGAGCTTCACCCTGACCGGGAGGCACGCAGCAATGAGACCCAGTCTGAGGAGCAGACGCAGCTCCTTGTCAGGAGAGGGGCCTTGTCTTATATCCCTTACTCAGTTCTGCATGTTATATTTTCCAGGTCAAATACTAAGCAAGTCTCAAGAGATATTTGAGGACGTACAGGAGGACTTCTATGATGTCAAGAAAATCCTGTCTAAATTTGATCAGTGGAAACTGCGCTTTCCTGACTCCTACTACAGTGCTTACATCGGGCTGTGTCTGCCCAAGCTGCTGGGACCCTTAATCCGACATCAGCTGATTGGTTGGAATCCCCTCAAGGCCGAGGGTGAAGATTTTGAGGCATATCCGTGGTACCCAGCGGTGGAGGAATTCTGCCACGGTCAAGGATATGAAGAGCCCGAGGCTGCGGATATAAAGACTCTGCCTTCGATTGTAGAGAAAACCATCCTTCCCAAGATCCAAGGCTTTGTGGAGAATGTCTGGGATTCTCAGTCCTCAGAACAAACCGAGTGTCTGGTGAATCTGTGCAGGAGACTGCAGGAGGACTATTCTGTGCTCACCAGCGAGCTGAAAAAAACAAGCCAGCTTCTAGGTAACATTACCCTGTGGGACGGCCTGGTCCCAGAAGACACCATTAAGGAACTGGGGCTAGACAAGCTCCTGAACCGCTACATAATGATGACTCTGATGAACACCCTGCCTGACGGGGACAATGTGGAAAGATGCAAAAAGGttccttttcatGTAGCTGCCTGTTTTCCAAAGCCCTGGTTTGCAACAGTGGACACCAGGTCTTCTATTCCCCAGTTGCAGAACTTCAGCAATCACTTGCTTCAGACTGCGCATTCACTGAGTAAACACAGCGCTGACCCCAGAAACAGGGATCTTGTAGTCGATATTGTGACAGTTCTGGGGAACATCAAGGCACTGGACCATGCAGCAGCTCTGATTGAGGAATGCCCTTATGAAGACTTGAAGACTTCTCTCCCCATCAGCCAATGA

Function

GO: NA

KEGG:

id description
K09061 GCF, C2orf3; GC-rich sequence DNA-binding factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003792 True 2376 mRNA 0.52 15 18280123 18287152

Neighbor

gene id symbol gene type direction distance location
AMCG00003793 NA coding downstream 4666 18248055 ~ 18275457 (-)
AMCG00003791 eva1a,LOC107593306,LOC107719434 coding downstream 53201 18222745 ~ 18226922 (-)
AMCG00003788 H3F3A,h3f3b,LOC105909691,LOC102696298,LOC107388308,LOC101073377,LOC107572204 coding downstream 59385 18215786 ~ 18220738 (-)
AMCG00003789 NA coding downstream 65023 18209701 ~ 18215100 (-)
AMCG00003783 NA coding downstream 104419 18163626 ~ 18175704 (-)
AMCG00003794 hs3st5 coding upstream 34708 18321860 ~ 18384752 (-)
AMCG00003796 marcks coding upstream 148135 18435287 ~ 18437960 (-)
AMCG00003801 NA coding upstream 396230 18683382 ~ 18690727 (-)
AMCG00003810 NA coding upstream 496496 18783648 ~ 18785327 (-)
AMCG00003806 NA coding upstream 592383 18879535 ~ 18889212 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding downstream 339411 17935840 ~ 17940712 (-)
G2972 NA non-coding downstream 1020580 17257937 ~ 17259543 (-)
G2973 NA non-coding downstream 1025358 17254271 ~ 17254765 (-)
G2902 NA non-coding downstream 1237574 17041437 ~ 17042549 (-)
G2903 NA non-coding downstream 1282519 16996790 ~ 16997604 (-)
G3257 NA non-coding upstream 122718 18409870 ~ 18418066 (-)
G3266 NA non-coding upstream 151949 18439101 ~ 18439510 (-)
G3270 NA non-coding upstream 258201 18545353 ~ 18545976 (-)
G3354 NA non-coding upstream 588430 18875582 ~ 18878573 (-)
G3374 NA non-coding upstream 662620 18949772 ~ 18950252 (-)
AMCG00003782 ctsb other downstream 127742 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 137442 18135379 ~ 18142681 (-)
G3181 NA other downstream 335181 17942577 ~ 17944942 (-)
AMCG00003751 NA other downstream 1139741 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 1408648 16868332 ~ 16871475 (-)
AMCG00003825 NA other upstream 1074666 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 1137811 19424963 ~ 19425366 (-)
G3523 NA other upstream 1156864 19444016 ~ 19506753 (-)
AMCG00003893 NA other upstream 5242367 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 5453433 23740585 ~ 23757796 (-)

Expression


Co-expression Network