AMCG00003806


Basic Information

Item Value
gene id AMCG00003806
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 18879535 ~ 18889212 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003806
CGCCGCCGCTCACTAGGGCTCCCTGTGCGGCCGGCGCGCCACCTGACCCCGCAGCTCACAGGCGCTGCAGCGGGGCTTGCGAGGGGATCCGCCGGGCTCGTACCGAGGGAAGTCAGTGGCCGGGTCGCAGATGCGCAGCCATTAGCGTCTGTTGTGCAGCGTTGTGTGGATTTGCTTCCGTGCAGcggtgacacacacacacacacggtatCCGGCCGTTGGCGATTGTCTCTCACAATGTCCGCTCCTGCTGTCAGCGCCGCCGCCGCGGTGAAGAAGAAGCATGTGCGCTTCGCCAGGACCGAGGAGGACAACGACGACCAGGAGGAGGACACCCTGTTTGACAAGAGGACAGACGCCATGAAGAGCGCCCAGAGCTTCCTGAAGGCGGGCAGGAGGCGCGGAGAGCCGGCCTCGGACACCGTGGCGTTCGCGGGAAGGAGCCGCTCTCCCGCGGGCTCTGGAGGGGCCGTCAGGTGGCCGGTCACGGCGGCCTTGTGCACCTCGTTTCTCGGCCTGGGGATGAGTATTGCGGTGCTCGGCCCTACGTTTGAAGACCTGGCGATCAACGTCAATAAGAATATCAGCAACATCTCCTACATTTTCGTGGGCCGCTCCCTGGGCTACATTGGAGGCTCGGTGGTCGGGGGTGTTCTCTTCGACTGCATGAACCACCACCTGCTGCTTGgctCTTCAATGCTGGTCACAGCCTTTGGCATGTTTGCAATTCCTTTCTGCAAGAAAGCTCTGCTACTTACAGTTTTCATGTCCAGCATCGGGATCTCTATGGGCTTTTTAGATACAGGGGGCAATGTGCTCATTCTGAACACCTGGGGAGACCAAGCTGGACCACACATGCAGGCCTTGCACTTCAGCTTTGCTGTGGGAGCCTTCGCATCACCAATTATTGCCAAACTGCTCTTTGGCAGCGTGCCCCCTGCAGGCACCAACATCAGCATAGAGGCAAGAGATTCCCAGGCAGCAGAGCTTCCTCCCGAAACCACCGACGCATCCAAAGCCCTGACAGTCCTGAGATTCGCTCACAGCAAGAGCAGCTCCCTGAAATCCATGTGGGCCTACATTGTGATTGGTGCCTTCATCCTCCTGGTGTCCCTCCTTTTCTTCATCCTCTACTCCAGGAGCAGCCCCTCCCGTGACAGAGCCAAGGCCTCCCCGGAGAAGCACCTGGTCGCCAGGCATCACAACGCTCTCATAATAAtgctcttcttctttttcttctgttacGTGGGAGCCGAGGTGGCCTACGGCTCGTTCATCTTCACCTACGCGAAGGACTTCGCCCACATGGATGAGACCCAAGCTGCTGGCCTCAACTCCGTCTTCTGGGGCACGTTTGCAGCCGCCCGTGGCTTGGCCATCTTCTGTGCAGCTTGTATGCACCCAGGCACCATGATCCTGCTGAGCCTGGTGGGCTGCACCATGTCCtccctgtttctctccctcttctccaAAAACAGGATCTCTCTGTGGTCCGGCACCGCTTTCTATGGGGCCTCCATGGCCACCACCTTTCCAAGTGGCATTTCCTGGGTGGAGCAGTACACCACGGTGACGGGGCGCTCAACGGCGGTTTTCGTGGTCGGGGCAGCCCTGGGCGAGATGGTGTTTCCAGCAGTGGTGGGCCTCTTGCTGGGGAAGACGCAGGATCAGCCTTTCTTAATGTACACTGCCTTGGGGACCTCTACCATGACCGCAATCCTGTTCCCAGTGATGTACAAATTAGCCACTTCCCACAGTAGCGAGGGGAGGAAGCTGAGGGAAGGGGGCCGTACCGGGGAAGACGGTGAAGACCGCAAAGCGCTGCTGGACTCTGGAGCCAacgaagaagaagaggaggaggaagaggaggacgagGCTGAACAGTGGAATGATGCTGACTTTGAAGTGATAGAGATGGATGATGCCAGCCTCATGAACTCGGCCCATGATACTTACTCGCCCCCCCGTGTTACCCCTGTCTCTGAGACTAGTGCAGAAACCACCACTTTATCCagcaccaccccccccaccaccactcccCCCGCTGCTGCTTCACCAGATTCAAGCAGGCAGCCAGCAGGACccagctctccctctccctcccactcATCCCCAGCGTTTCTTGGGGGTTCACCTAGGAAGAAACTGCTGCTGAACCTGGACAGAGAGAAGAAGGACTGAGCATTAATCTGTGAACCTACTGAACTCCTCTTTCACTAAAATGAAGTGCTTGTAGGACATGCAGGGTGGTTTTTAATTCATCATTTCAGTTGCAAACCCCTGCAATCTTGGACCGACATTTTAGAAGATTTTAGGAACATATTAGGACAAAGTTTCAACACTAATCCCTGGACAACTGGTGATTTGAAGGAGGCAACAGAGCAAGAGGTGATCTGAGTCTCCACTGAAACTTTCATTATTCAACTAATCATTCCACAAAGAGGGGGGCCTATTGAATGTTTCGCATAGAGGACTGTATTTCCCACATGTACTGGTACTTCTAGTAAATGAATAAGCAGGTATGTactgtttgctttaattttatgagtaactgaaatggtttgatgagtaaaAAATCaccctgtattttttttaatgatggaGGAGCACTTTTACTGTGGGAGTACCTGCGTTTGTGAACACTACTGTCCGCCGTCTGTCGTGTGAGCTGTGTTGATTGTTCATACTGCATGCACTCAAGACTGGGATCCTCCACACGTCTAGACATCCTCTAGCTTCCTGGTGCTCGGAAACGATCAAGGCCAGTGCAGATTCCCTGCGCGTTTTTGTAATCGAAGCCGGTAATcgttattttataataattttgaaatgagAATCATCTCTAAGTGGCTCCAGTCAGATGTTATATGAAGGGACAGGATTgcagagtttttattttggttaatgACCTACACATTAACTCCAGGACACTTTGTAATGAGGGTTGACGAGTCCAGtataattacacattaagtaaTACGTCATCTCATACCAAGCCATTTCTTCCCCTTCTGCAACATGACCGAATCACGAGCAGGTTATTGTAGTGTGTTTTGTTGCCCCTGTGCTTTTTGTTCTTCTCAAGTTTCACTTAGAAACTACAAGAACTGCATTCTCTGCCTTGTGTAGGTACACTTTCtatttaataagaaaaacaccAAATATGTTGACCTTAATGAACATTCCCCTCCCCCTGGGAGGACgactttattgtttatttaatcactttcacagttagttaaaaaaaaaaaaaagaacgtTCTTTACAACACTGAATTGAAACAAAATCGTAAAGTTGTGCCTTGACCGTAGAGTGAAGCATGATGTCATGTCTGCTACAGAGGAGGGGAGGCCTCGCCCATATTGGCACCTCTACTGACACGTCTTTCATTTTGCCACTAGAAGCGAACACAAATTCCAGGAGAAATCCGAGACCTGCACTGGGGTAGCTAAGGGCTGTGGAGAGTGAGGTGTTTACATGAATGACTATTAATAATCCAGTGCGTTAGACACAACGATATGTGCGGTGTATCACGCCAACCAGAGAAAAACTCTTCACACAAAATGTAGTGATGGCACAAAGCACTTACTACCCTTTCTCTTCTCTCATTGccttcaatatttgttttaatgttttactgttatttaggtatttatttgtcttgtcGTTCAGGATAAATATAAACGCACTCTTTGTGTTTAAGAAATGAAAGTTCAGTTTATTAAATGTCACCTTTTCATTTGACaatgtttattgttgtgtttcatCAATATGTTGGGagatttaaaagattttttgtattgatgCTCCGTTCTGAAAGGGGATTGCCTTCAGTTCGCATGTAGAAACCCTTGGATCTCATAGAAGCTACTTTTCTATGGGTGGTTATGATACCTTCCATTTTTTTCAAGAGCAATATCATCTTGGCAATTCccaaaatgaaagaataagaACACGTCTCGTATGGAGAAGGactagaataaaaaaaaaatcaagaaatggTGCGTAGCCTACGTAGAGATGTGGATATGCCTGTTGCAAGAGTGAAAAACTAAAGAAATCGGCATTCATCGCGGACTAATTTCCTCTTTTGTGTATCGTCTGTGAACTGAGGTTGTTGTAGTTTTGTGGATTTCATGATCTTGATAAACAGTCCCACGTCCATTCATACCACATCACAGAAGGACGACCCTTCAGAAAATTGGAACAATCAAATCCTGTGGTAGATTCAGGAAAGTTTTAATTATCCATTTGGCCTTGGAAAAAGCAAGGGCCCTCAACAGTTTAAACTTGGAGCTGGTGATTTAGATTTAATCAGTTGTGGAATAAAGTTAAATGTGAAACGTGAAAATGATATTCTGTCCCTGGTATGAATCTGTCTTACTCATTTCTGTTCATTCTGTTCACATATtcttccctttttaaaaatcaaaatgttatattCAACCAGGCTGCAAAGTCAGGCTTTTCTGGAGGAATAGGATTGCTTTATGAAAAATATAGCCACTACTATCCCAAAACTGCCATTGCATCCCATCACTTTCGGAGagattaattgcatttattttgtaatggatTATTGATGCATATTCTAAAGATGTGCCCGGTGTTTTCGGGGGGTCATGAAATATGTGTGTGCCAAAgataatgtttctttatttagcttttattttttgagacTGGGCAGACTATAGTCtatataatcataaaatatgaGGAGACCTTTCTCCTGTAATTATAAAGGAGATTTAATACAAAGATTACTAAAACTTGCCTTcccttaaaaaagtataaatttTCTATGCTAAATGCATTAACTAGAGGTAGAAAATTATACTTTACATAAAGCAACCCATGTGACTCtcaacattatataaaatgctATTTACTCCAAAAATGGCTTGATCCAAAGCCTTTTCCAATTCAAGAACAGTATCCTCAGAGCACTGTGTTAGAAACTTGATATCTGCCGAGTTTTAATTGCGCTTTAATGTTTCACTTCAGCTTAATGTTTGAATGGTTTAGAATGCAATCTGTATTGGactgaatttacattttatttactggCAGTCATCGTTGGGAAGCTCTTTATTCATTGTCCTGAAGTGGGCTgattgtaaatatttctgtCACAGAATGTCGTGTAATAAAAGGTCTTTTAAGACACTGATCTCAATACATTATAAAAGAGAGGAAGAGCGAGCCCCTCCCCGGCCCAGCAG

Function

GO: NA

KEGG:

id description
K08175 NAGLT1; MFS transporter, FHS family, Na+ dependent glucose transporter 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003806 True 5223 mRNA 0.47 4 18879535 18889212

Neighbor

gene id symbol gene type direction distance location
AMCG00003810 NA coding downstream 94208 18783648 ~ 18785327 (-)
AMCG00003801 NA coding downstream 188808 18683382 ~ 18690727 (-)
AMCG00003796 marcks coding downstream 441575 18435287 ~ 18437960 (-)
AMCG00003794 hs3st5 coding downstream 494783 18321860 ~ 18384752 (-)
AMCG00003792 NA coding downstream 592383 18280123 ~ 18287152 (-)
AMCG00003807 NA coding upstream 3552 18892764 ~ 18912514 (-)
AMCG00003811 NA coding upstream 42552 18931764 ~ 18937964 (-)
AMCG00003809 rpf2,LOC102791246 coding upstream 54883 18944095 ~ 18948660 (-)
AMCG00003808 amd1,dcam coding upstream 62040 18951252 ~ 18971095 (-)
AMCG00003817 NA coding upstream 199986 19089198 ~ 19098312 (-)
G3354 NA non-coding downstream 962 18875582 ~ 18878573 (-)
G3270 NA non-coding downstream 333559 18545353 ~ 18545976 (-)
G3266 NA non-coding downstream 440025 18439101 ~ 18439510 (-)
G3257 NA non-coding downstream 461469 18409870 ~ 18418066 (-)
G3170 odc1,LOC107687948,LOC107753348,LOC107758719,LOC107687839 non-coding downstream 938823 17935840 ~ 17940712 (-)
G3374 NA non-coding upstream 60560 18949772 ~ 18950252 (-)
G3395 NA non-coding upstream 156595 19045807 ~ 19046205 (-)
G3402 NA non-coding upstream 188244 19077456 ~ 19077864 (-)
G3403 NA non-coding upstream 190222 19079434 ~ 19079665 (-)
G3405 NA non-coding upstream 195492 19084704 ~ 19086692 (-)
AMCG00003782 ctsb other downstream 727154 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 736854 18135379 ~ 18142681 (-)
G3181 NA other downstream 934593 17942577 ~ 17944942 (-)
AMCG00003751 NA other downstream 1739153 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 2008060 16868332 ~ 16871475 (-)
AMCG00003825 NA other upstream 472606 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 535751 19424963 ~ 19425366 (-)
G3523 NA other upstream 554804 19444016 ~ 19506753 (-)
AMCG00003893 NA other upstream 4640307 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 4851373 23740585 ~ 23757796 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000195_00375179_00378443 NA coding CI01000195 null 374199 ~ 378443 (-)