AMCG00003818 (lats1,LOC107742997)


Basic Information

Item Value
gene id AMCG00003818
gene name lats1,LOC107742997
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19152616 ~ 19169651 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003818
CTACTATCACACATCTGAGATTTTTGTCTCCGTACAGGCACCGTACATTCCTAGCCAATCACACGCCAGTATTGCGAATCGGAAGAGGCGGAACCGGCGGGATCCACTGAACgagaaaaatagaaaagtgtTCGGAATTTAAATTGATGTGGAAGAAATAATAAGTaggtatttaataaaatagatgGAGTGCATTAACGCTAAATTTGTGTCGCAAAAGATCAGCAAGACACGATGGAGACCGGTCTCTTCTGCCTCGCTTCAACAACCAGATATATTCGCTACGGGGTCCTGGGATAATGAGGACAACAAAGTTTCCATCTGGTCTGTCGGAGAGCATGGAGTCTCCAGCATGGAGGATGAGTTTGAAGGAGATCCTCAGCTCCTGTGTGAATTCAAACATGACGGCGATGTCCTCGACCTTCAGtTTTTGGACATGGAGAGAATTGTTACAGCTTCATCCACTGGAGCAGTTACCATCTTCCGTCACCACCACAACAGCCAGACTCTGTCTGTGGCTCAGCGTTGGGATCGGGCACACTTCTATTCCTGTGACAATGCCCCCTGCACGGGTGTGGTGTGCAGCAGCCCAGAGATTGTGTCGGTTGGGGAAGACGGTCGGATCATGCTCTTCAGAGTGGAACACAAAGGAGTCATACGCACCATAGacAATGCTGATAGCAGTACAATCCATGCTGCAACTTTTCTGAGAACAACAGAGGTTCTGACAGTCAATTCTATTGGCCAGTTGAAACTGTGGGACTTCAGGCAACGGGGAAATGAACCATCACAGATCCTCTCCTTAACTGGGGACAGAGTGCCGCTACACTGTGTGGACAAAAACCCCAACCAGCAGCACATAGTGGCTACAGGGGGGCAGGACGGCATGCTGTGTATCTGGGATGTAAGACAGGGCAACATGCCGTTCTCGCTCATGGAAGCTCATTCTGCTGAAATGTGGGAGGTCCACTTCCATCCTTCCAACCCAGAACACCTGTTCACCTGCTCAGAGGACGGCTCTCTGTGGCACTGGGAGAACTCCACCAACACTGACACCCCATCGTTCTTACAAGGTGGAAGAAATACTACCATAACATCACGCAGCACTGTTGGCCCTGCCAATGCAAATCAGTCCTTGATAAGCTCCTGGTTAAACAATGACTCTTCTAAAGGCCGTCTGGAGACGACAAACATGCTTCCCAGCCAGACCATGTCTGTGAACAGTTTGGATGTGCTGGGGCAGTGCATGGTCTGTGGGACCGATGGGGAAGCCATTTATGTCACAAAACGTGTGCCATCAAGAGTGGACTATCCGAGCGACACCGGGACAGAAAGAAGGACAGCAGTGATATCCGCGGCACCGCTCAATCCGCACACGGTCCACTGCCGCCGCGGCGCTTTGTCCTCAGTACAGTGTGGTAATGAGCTGCAGACCGGAGGCGCTAGaTGTTGCTTTGGCACTAGGACAACAAATGTGAAGAGGAACGAAGCCCAGTCCAGCCAGTGTCGTTTTAGTTCTCGCGCATCAGTGACCGCCCAGTTGCTGAGAAGAGGGGAGAAACCCGAAGGATACCGACAGGTGCGGCCCAAGACTTTCCCAGCGAGTAATTACACTGGCAGCAGCCATCAGATGCTGCAGGAGATTCGGGAGAGTCTGCGCAACCTGTCCAGGCCCTCCGATGCGGCCAAGATGGAGTGTAGTGCTGGGAAAGGGCTGGCAGAGGATCCCAGGCAACAGGGCAGGAACACCAACCCAAAATCAAACACCTACCATAAAGCCCTTCAGGAGATCCGAAAGTCCCTGATGCCTTTCGCCAATGAGCCCAGCTCCTCGGGCAGGGGTACCTCTGAGGTCAACAAGCAGATGCTGCTGGAGTTGCAGACTGCTGGATTTGAGGAGGAGATGGTGATCCGTGCTCTGAAGCAAACCAATAGCCGGAGTGTGGAAGCTGCCATTGAATACATCAGTAAAATGAGCTACCAGGACCCATGGAGGGAACAGATGGTGGCTGCTGCTGCACGGCCAGTAAATGCTGGCATGAAAGCTCCTGGTCATATCCAGCAGCCGGTGCACCGCAAGCCAAGCTGGAAGGGCTCCAAAGAGTCGCTGGTTCCTTCCAGGCACAGCTCTCCTCTCGTAGAGGGGATGATGTATCGCTCCGATAGCCCAGGGCCGCAAGGTGAACTGGGAGGGCGACCACCATCGGGCTCGGGACTCGCAGCCTTCACCCAGGGTCACCAGGGCAATGGGCAGCGTGTCaaccctccccctcctccacagGTGCGTAGTgtcacccctcctcctcccccaacCCGGGGcaccaccccaccaccaccatcctGGGATGCAAACCCTTCTACCAAGCGCTTCTCCGGCAACATGGATTACCTAGTACCCCGCATCTCCCCAGTCCCTCAGAGTGCCTGGTCTGATGGCTACTCTGCGGCCCCCCCTCAGAGTCAGAGAGGAATCAGCCCTGTGCCGGTGGGCCGACAGCCTATCATCATGCAGGGACCTGCGGGAAACAAATTCAGCTTTCCTGGCTGGGCTCAGAATGGTTCGGGACAACCTGATTACTTGGGACACCAGAATGTAGGcatgagcagcagcagccggcaacccccacccccttatcCCATGAACCAGGGCAACAGGCAGAGCCCCACTGCTGTGCAAATGCAAGCAGGTGGACCCGCCTCCTCGCCCACGTATGTCAATGGTGGCAACATCCCTCCGTCCATGATGGTGCCCAACCGGAACAGTCATAACCTGGACCTTTACAACCTCAACATTCCTGGGATGCAGCCTGCCTGGTCCCAGCCGCCTCCTCCCCCTGGTCAGCCCCAGTCCTCTCCAGGCAATGGCAGCCACGAGATGCCCACGTCCTGGCAGCACAACATCCCTGTCCGCTCCAACTCGTTCAACAGCCATCAGCTAAGCAACAGGCAGAACCACCCTGCAAACTCCCAGCCCTCTGCCACCACTGTGACAGCCATTACCCAGGCGCCTATTCTCCAGCCTGTGAAAAGCATGCGGGTTCAGAAGCCAGAGTTGCAGACAGCTGTTGCTCCCACCCATCCTCCCTGGATGCAGCAGCCGCCCCCTCCCAGCCCCTTCCAGGATGGGCCCCAGCCTATGGGATCGGGGACTACAGTGGCTGAAGTGCCTAGCTACCAGGGCCCTCCACCGCCCTACCCAAAACATCTCCTCCAGCAGACaaacaccccctccccctcctatGAGACCGCCACTAAGCAGAGCAGTGGCAAAGAGGAGCAGGGCCATGGAGCAGGTAGAAAGGAGCaagaggaggagggcagcagcagcagctccagtgACAGGGCAGAGAGCTCAGAAGGTGCTGTTGCTGCAACAGACCGGGAGAAGAAGCAGATTACCACCTCCCCTGTCCCCGTCCGCAGAAACAAAAAAGAcgaggagaggagagagtcCCGCATCCAAAGTTACTCCCCACAGGCCTTCAAGTTCTTCATGGAACAGCATGTGGAGAACATCCTGAAGAACAATCAGCAGAGGATGCGCCGCAAAAAGCAGCTGGAGAGCGAGATGCAAAGGGTGGGCCTTTCGGAAGATGCCCAGGAGCAGATGCGTATGATGTTATGCCAGAAAGAGTCCAACTACATACGGCTGAAGAGAGCAAAGATGGACAAGTCCATGTTTGTGAAGATCAAGACCCTGGGGATTGGGGCTTTCGGGGAGGTGTGTTTGGCAAAGAAAGTGGACACCAACGCGCTGTATGCCATGAAGACCCTGCGGAAAAAGGATGTGCTGTTGAGGAATCAGGTGGCTCATGTCAAGGCAGAGAGGGACATCCTGGCCGAGGCAGACAACGAGTGGGTTGTGCGACTCTACTACTCCTTCCAGGACAAGGACAGCCTGTACTTCGTCATGGACTACATTCCCGGCGGAGACATGATGAGCCTGCTGATTCGGCTGGGCATCTTCCCCGAGGAGCTGGCGCAGTTCTACATCGCAGAGCTCACCTGTGCGGTGGAGAGCGTGCACAAGATGGGCTTCATCCACCGTGACATCAAGCCCGACAACATCCTGATCGACCGCGATGGACACATCAAGCTGACGGACTTCGGCCTCTGCACCGGCTTCCGCTGGACACACGACTCCAAGTACTACCAGAGCGGTGACCATATCAGGCAGGACAGCATGGACTTCAGTAAAGAATGGGAAGATCCATCAAACTGCCGCTGTGGAGACCGACTGAAGCCCCTGCAGCGGCGGGCAGCACGGCAACACCAGCGGTGCCTGGCTCACTCTCTTGTCGGCACGCCTAACTACATTGCCCCTGAGGTCCTGCTGAGGACAGgttacaCTCAACTCTGTGATTGGTGGAGTGTTGGTGtcattttatatgaaatgttaGTTGGACAACCACCGTTTCTGGCAACTACACCACTGGAAACGCAGCTTAAGGTGATCCACTGGCAGACAAGTCTCCACATCCCCCAACAAGCCAAACTGAGCCCTGAGGCCTCAGACCTGATCATCAAGCTGTGCCGGGGCCCCGAGGATCGACTTGGCAAGAACGGGGCTGATGAGATCAAAGTGCAGCCTTTCTTCAAGACCATTGATTTCTCTACCGACTTgaggcagcagcagcggccAGCCCCGTACATCCCCAAGATCACGCACTGCATGGACACTTCCAACTTTGACCCCGTCGACCCCGACAAGCTGTGGACGAGCGACGATGACGCGGAGGGGAAGAACAACGACACCCTGAATGGTTGGTACAAGAATGGCAAACACCCCGAGCACGCTTTCTACGAATTCACCTTCCGCCGTTTCTTTGATGACAACGGACACCCCTACAGCTACCCGAAACCCATCGAGTACGAGGGCTATGACCAAGATGACCTCGATTCGGAGCCCCAGCAGCAGGAAATGGGGCGGGAGCAGTCCAGCCGGGGAGGACAGGGTCGTGATCTAGTGTATGTGTAGCCTGAGTACGGTCTACCCTGCGCAGACTCCTGAGAGCGCACATACAAACTGACTTTTGTCACCAACTTCTACCTGCATCACTGCTGCTGCAaaaggacagggagagaggaaaactTGTTTTAATAGTAACATTTAGCTTTTTCCACATCTCCTTGATAGTAGTTGAGCAGGTCTAGCCTGGAAAGTCAAAGATGGACACAGATTGTGTGAGGAAAGACATTCAAAGAAAAGTCTGTTGAAGCCCATACTACAGGTGTATTTATTATGGAGTGTACAATGTATTTCTCAAATATGGTGTCTAAGCAGAAACGTTCAAATCGACTTGTGCAAAgactttacaatgttttctttatctgaatctttattttaaagaaataacaacccctttcttaatttatttaaatattttaaactgatgATAATGGTAACACATTCAAGATAAACACtatcattttttgttcttttagaaactgaatattttattggaaatatgtcttaatttataatttagtaGGTCTCATTTTGTTAAGTTGCAAAGGTGAACTATATCGATCTCTCATTTGGAGAAATTGATTTTGAGATGGAATAAGTAAAATCCTTGAAGCTAAGTGTACATTGCAGTGCCTTTTCAAATCCTCTGCTTTCTTTTACCAAATATTAGAACAATTTCAATCACCTTGGCATTTTTTAATGAGGTCATTTTTCTTAGGTGAGATTTAGTGGATTTTACTagtaatttgtgtattttcttcctaatttatacatatacatgtatttataaattatgcTGTATAAATTACATGTAAATACTGTTCTTATCTATCCTGTTGGTTTCATTGATAAGCTATCCTAGGGCAGgccctcttgttttttttccttgtagttctgtgctttttctatAAGTTTTTTGATTATTCACTTGGCCTTTCCATCCCTTGCCCCtttttgaaacaaataaatgcaccaGTTATTACCAATATTCTAAGGTCTTAGAGGAGAACAGCACATTGAGTTTAATgagtttaaacaaattaaatcaattttattcCTTTATATTAAACAGGGACCATGCTTCCATCTGTGTAGGAAAAGGTCTTTATCTCGAAATACTGAATATACCCTCTCCCCAGCTGGCAGGTCATATGGCATGCAACAGGGGAGGATGATGTTCTTTGGGATTTTAGGAAAGGCTTTCAACAGCTTTCTCTCTTTATGGGGAAGTGGGTATTTGTGGTGATGTAAGTCACGCACAGCATCTCCTGAGATGGTTAACCCAACTATTGAGGAGGTTTACACTTTCAATGTTATTCTGGAGTATGATCAatatttctacttttttttttttctttttcttttttttaaccataatCATCTTCTCAAGAATTCCAAATCAGTTCTTAATGTAAAATTTACAATGGGCAGCGGAGGgggagagaataaaaaaatgaaacctatgatttgtttgtttttttattatttcaactaTATTCCCAAACCAGTACATTCTGTTTAGGAACTGCTATTTTTCCACTGActtaagaaacatttaattttgtattgtaggAACCAGAATATATTTGCATGACGGCAACCAAAATAGAAAGTTTC

Function

symbol description
lats1 Predicted to enable protein serine/threonine kinase activity. Acts upstream of with a negative effect on BMP signaling pathway. Acts upstream of or within convergent extension involved in gastrulation and secondary heart field specification. Is expressed in several structures, including head; heart; liver; pectoral fin; and pleuroperitoneal region. Used to study autosomal dominant polycystic kidney disease. Orthologous to human LATS1 (large tumor suppressor kinase 1).

NR:

description
PREDICTED: serine/threonine-protein kinase LATS1

GO: NA

KEGG:

id description
K08791 LATS1_2, Wts; serine/threonine-protein kinase LATS1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003818 True 6586 mRNA 0.50 17 19152616 19169651

Neighbor

gene id symbol gene type direction distance location
AMCG00003820 katna1 coding downstream 2454 19142919 ~ 19150162 (-)
AMCG00003819 ppil4 coding downstream 20764 19119815 ~ 19131852 (-)
AMCG00003817 NA coding downstream 54304 19089198 ~ 19098312 (-)
AMCG00003808 amd1,dcam coding downstream 181521 18951252 ~ 18971095 (-)
AMCG00003809 rpf2,LOC102791246 coding downstream 203956 18944095 ~ 18948660 (-)
AMCG00003821 NA coding upstream 11028 19180679 ~ 19196676 (-)
AMCG00003822 map3k5 coding upstream 32012 19201663 ~ 19240595 (-)
AMCG00003823 ctgf,LOC106571301,LOC107683930,LOC107737382 coding upstream 114345 19283996 ~ 19287183 (-)
AMCG00003824 NA coding upstream 218714 19388365 ~ 19390719 (-)
AMCG00003829 NA coding upstream 305238 19474889 ~ 19478369 (-)
G3405 NA non-coding downstream 65924 19084704 ~ 19086692 (-)
G3403 NA non-coding downstream 72951 19079434 ~ 19079665 (-)
G3402 NA non-coding downstream 74752 19077456 ~ 19077864 (-)
G3395 NA non-coding downstream 106411 19045807 ~ 19046205 (-)
G3374 NA non-coding downstream 202364 18949772 ~ 18950252 (-)
G3470 pcmt1,LOC107554157 non-coding upstream 5921 19175572 ~ 19180511 (-)
G3482 NA non-coding upstream 186994 19356645 ~ 19357239 (-)
G3535 NA non-coding upstream 543184 19712835 ~ 19713052 (-)
G3552 NA non-coding upstream 730318 19899969 ~ 19900381 (-)
G3553 NA non-coding upstream 732431 19902082 ~ 19903092 (-)
AMCG00003782 ctsb other downstream 1000235 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 1009935 18135379 ~ 18142681 (-)
G3181 NA other downstream 1207674 17942577 ~ 17944942 (-)
AMCG00003751 NA other downstream 2012234 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 2281141 16868332 ~ 16871475 (-)
AMCG00003825 NA other upstream 192167 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 255312 19424963 ~ 19425366 (-)
G3523 NA other upstream 274365 19444016 ~ 19506753 (-)
AMCG00003893 NA other upstream 4359868 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 4570934 23740585 ~ 23757796 (-)

Expression


Co-expression Network