AMCG00003821


Basic Information

Item Value
gene id AMCG00003821
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19180679 ~ 19196676 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003821
CGGCGCTGCACGGAGCTGTCACTCCGCGGCGGTGCTGAGCGCCCAGCGCCACCATGTTATCGCTATAGCTCAGAGCCGGGCTCCCACACAGGCACAGCGGTCGGGCACCTGTCAGTATGTACACCAGGTCCGATATTTAGACTATCACACGCATCTCTCACCCGAAGAACATGAAAAGCTGAGTATTCCTTTCCCGGGCGTCTTTGTTTACAGGCCGGAGACACCTCTATAAGCAGACATGCCGCGCTTGCCCTCAGCGCCGCAGTGCCGCCGCCTCGTCGTGTGCGCAGCCCTGCTCTGCATGGAGCACGTCGTGTTTGCCACATCCTCCCAGATCTCCGATTTGAAATCCAAGATCTCGGGCGTGGAGGAGCTCCTGGAAGAGTTTCGCAAGCAGCTCCAGCAGGACCAGGAGCACAAGAGGGAAGACGGCGTGGGAGACGGGTGTCTGAGCAGCTTCAACGCCATCGAAGACTACATCATCCGGGCGAAGGACTCCATTGAGTCGGGGGCCACCTTCCTGACGGCGCCCAGCCCCGTCCACAGCTGGAAAGACTGCCTCCACGCCTGCTGCGCCAGCCCGCACTGTACCGTCACCGTGGTGCAGAAGGACCGGGAGAGGGCCGAGGAGAGCCTCAGCTGCTTTTTATTCAACTGCACTTACAGGAACAGAAACGTGTGTCAGTTCTCTCTGCAGAAGGGCTACAGCAGCTATAACCGGGTTTCCAATGCCACCCTGTACCCCAGTCTCGGCGGGGCTAATTTGGATTTGACTAAAGAAGCCAGCTACAGGAAAGCATCCCGAGTCAAAATTGCACCTGAAGACTCTGCGATACAAGACATTGATGAGCCTCCGCGCAGTGATGCTGGGCAGGACGTGGTGTTGCAGCTGCCCACAGACTGGGCAGTGCTGGACGGGAGGGACAGTGTGGACGATCATGGCATAACACGCTACGAATGGTCACTACTGCAAGGGGATCCTTCTGTGAACATGAAGGTTACCCAGCCTGGGGTTCTGAAGCTGAGTGGTCTACAGGAGGGAACTTACCTTTTCCAGATGACTGTCACTGATACGGACGGGCAGAAGAGTTCAGACaatgtcactgtcactgttaTTGCACCTGAGCACCAAGCAGAAGTCTGTACAGGCCACTGCTCCAGATACCAGTTCATGTGCGACGACGGCTGTTGTATTGACATTACATATGCGTGCGACGGGAAACAGCAATGTCCAGATAGGTCTGACGAAGCCTTCTGCCAAAGCTTTGACGGGAGTCGTAAAGCTGTCACTCACTCTTCGGGCGTCCCCAGCCAGCTGAGGATTGAGGCCCACACTGAGGATGGAGAGGACAGGGTGATGTTGCTTGGCGAAGCCAAGAAGACCATGGTGGAGCTGAAGACGCCCATCCATTCCTATGACAGAGGAGAGAGCCTTCCCCTGCCTCATGGGCAGACCGAGGGAGGCAGACACATCTCAGACAACTGTTTGGCACCTCCTGCTGTTGGGCCGTGCAAAGGCCTCTTCCCACGCTGGTACTTTGACGAGGCCGCTGGAATATGCAAGCATTTCATCTATGGAGGCTGCAAAGGAAATGGGAACAATTTCTTGCAGGAGACAGACTGTATCAATGAATGTATAAGAAAACAAGgtaCAGCCATGCCAAAGAACATCACTGACCCTTCCTCTACAACAAGATCTGAGTCTCCTAACACTGCTCGAGCAGAAACTGCAGAGGACCAAGGTGAAGGTGACCCCTTGTCCAAACCCCACCATGCCACAGGTGGACACCCCGTTCCAGAGTCAGGAGCTGTGCTGCCTCTCGCGCTGGGCCTGGCCATCACTGCCCTGCTGCTGCTCATGGTGGCCTGTCGCCTGCGCCTGGTCCGGCAGAAGCTGAAGAAAGCCCGGCCGATCACCTCCGAGGAGTCCGATTACCTGATCAACGGCATGTACCTGTAGTGGAGGCCTACAGGCACAGACCCAGGATCCCACTGTCCAGTCGGAGAGGGGCTGGAGTGACCATCATCTCAAAAGATTAGAAAACAGCATTCCCCAGAGCAGTGAGGAAAACTTAACAGCAACAGAATTGTGACATCTAATCTGAATTAAATGTGCAGCTGCTTTCCCTCCCCCACCTGCAGGAGTGGTTACCAGATGTGGGAATTGTCTTGTAAACTAGAAGGCCTTCTTCTCTGTTACCAAGCTTCTCAGATAACATGAGCACTGTCATCATTAGCATGGGCAGCTGCATGGACTTGTTTTTGTATAATGATGAGAGAAGAACTTGGAGGTCCTTTAAGTCTAGCCCAGTCATTTTACTCTATACCAGTTATTCTAAGTATATCTGTAATGTTTAATGAgaaggttgttttgtttctaatttattttacctcAATACACCAATCAAGGATGTTGAAAGCAACCTATTATGAACCCATGTGATATCAGTAGATGTACACATTTCTACAAGGTGGTACTACTGTGTTGTCTTTTAAAGATTGTATAATACAGCCTGCCTTCATTGTAACAGAAGCTTTCACAGTTCACAACAGAAGTCCCTTGAATGATCTCCATCTTACCCTGTAGTCTTTGGTCAAGAGTTAAACCGAATTGTCTTTGTCTGTAAAATGCAATTTACTGCTAAATGCGgttacatgaaatacatttagttCAACCACCAGAGGTGCATGTGATATACTATTGTCCTGTATTCCTATGATTCCTGACTAGAGGGGAAAACTTTTATAATATGGCCATTGTAAATTACTGAGCAGAACTACTGCACACGTCAATGCTAATAGTTCTTGATTCTCTCCAGAGATATCATTTGAAAGTTTAAGATTGCAGCTGTTGGGTTTTCTCTCCTAAGAGTCACCTGGAAGTGAACAGGTTTGTGTTTGCAAAGGACTTGATGATCAAGCCAAACCTTTAACACAAATTTATAACAGCCCAAGGAAGTAGTATTGCACCATGAACATCATTCAGGGTGGTAAATACTGCTTACAGGCAGTGTAAGTATTTCTGAAGTGCAGTAACCTTAACGTGGCAGAAAACGAGAAAATTAATATAACCATGAGTGTCTTAAGTCAGCAGACTTGCACTACATAGCCAAGGGGACTTTGGACAAGTCTACCTGCTACTGCATACTTCACCAACCTTTGTGGGAAGGTCTGGTCTTTACTCATTACGCTGCATAAACCTTTATGTCTACGTTTTGTTCTTCGTTTTCGTTCTTTGCAAATTCAACAATGCTGTTgatataataattgttaaatgttctaaattatataaaactatGAAGTAAATGTTGTATGTAGGTCAGAAATTGTGAAATCTCTGTATGCttacacaataaaaaattaagtgagatttaaaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003821 True 3379 mRNA 0.49 9 19180679 19196676

Neighbor

gene id symbol gene type direction distance location
AMCG00003818 lats1,LOC107742997 coding downstream 11028 19152616 ~ 19169651 (-)
AMCG00003820 katna1 coding downstream 30517 19142919 ~ 19150162 (-)
AMCG00003819 ppil4 coding downstream 48827 19119815 ~ 19131852 (-)
AMCG00003817 NA coding downstream 82367 19089198 ~ 19098312 (-)
AMCG00003808 amd1,dcam coding downstream 209584 18951252 ~ 18971095 (-)
AMCG00003822 map3k5 coding upstream 4987 19201663 ~ 19240595 (-)
AMCG00003823 ctgf,LOC106571301,LOC107683930,LOC107737382 coding upstream 87320 19283996 ~ 19287183 (-)
AMCG00003824 NA coding upstream 191689 19388365 ~ 19390719 (-)
AMCG00003829 NA coding upstream 278213 19474889 ~ 19478369 (-)
AMCG00003830 NA coding upstream 425933 19622609 ~ 19624841 (-)
G3470 pcmt1,LOC107554157 non-coding downstream 168 19175572 ~ 19180511 (-)
G3405 NA non-coding downstream 93987 19084704 ~ 19086692 (-)
G3403 NA non-coding downstream 101014 19079434 ~ 19079665 (-)
G3402 NA non-coding downstream 102815 19077456 ~ 19077864 (-)
G3395 NA non-coding downstream 134474 19045807 ~ 19046205 (-)
G3482 NA non-coding upstream 159969 19356645 ~ 19357239 (-)
G3535 NA non-coding upstream 516159 19712835 ~ 19713052 (-)
G3552 NA non-coding upstream 703293 19899969 ~ 19900381 (-)
G3553 NA non-coding upstream 705406 19902082 ~ 19903092 (-)
G3554 NA non-coding upstream 711354 19908030 ~ 19908341 (-)
AMCG00003782 ctsb other downstream 1028298 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 1037998 18135379 ~ 18142681 (-)
G3181 NA other downstream 1235737 17942577 ~ 17944942 (-)
AMCG00003751 NA other downstream 2040297 17137248 ~ 17140382 (-)
AMCG00003742 kif26ba,LOC107693166,LOC107682227,LOC107589674,LOC107586651,LOC107729288 other downstream 2309204 16868332 ~ 16871475 (-)
AMCG00003825 NA other upstream 165142 19361818 ~ 19373225 (-)
G3517 LOC101154678 other upstream 228287 19424963 ~ 19425366 (-)
G3523 NA other upstream 247340 19444016 ~ 19506753 (-)
AMCG00003893 NA other upstream 4332843 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 4543909 23740585 ~ 23757796 (-)

Expression


Co-expression Network