AMCG00003828 (ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350)


Basic Information

Item Value
gene id AMCG00003828
gene name ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19271965 ~ 19397686 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003828
ATGTCACCGGCCAAGCATGCAAACAAGTTGAAAAGATTGCCCAGCTCCTGTGCAGTGAGCCCCGGCCCCGGCCCGGCCCTGCGCCGCTGCATTGTGTCCCTACACCGACACACGCACCCCGCGGAGGCGGGCGAACGACCAAATACGGGCTGGGTGGGAACCTCCAGGGAGCAACTGGATGGTGAAAGATCCAAtaaccTGAATCAGCATGTcaaaTGGCAGGCGCAGGTCTTGATGAACATCATCTGCTTCTTCATCATCTGGCCGTCGGGGCACTTGAACTCCATGGGCAGAGTGGTGGTTCTGTGGGGGGTGCAGCAACGGCCATCAGTGCAGACGCCACAGAACTTGGGCCTATGGGACTCGCAGGGCCTGACCATGCACAGTCTGGACTGCTTTTCCAGTCTGCACGCCCTGTTGTCGTTGGTGACTCTGGTGGATATGCCCAGGCCGCAAGTCTTGGAACAGGCGCTCCACTCAGTGGTCTGGACCAGGCAGTTCTCACGCATCATGGAGGGGGATGCTTCTCAACAAAAGACTAAACTCACCAGCAAGAACAGGTCCAACCAGGGTTTGACTTCCTGGTGCGTCGCACACCCACTCCTCACAGCATTTCCCAGGAACCTTCACCCTGCGTGGCATTGGGCAGTCAGGGCTGGGGAGGCGGACGTCCATGCTGCACAAGGGCACACAGCCCACCGCGCCATCCAGACAGGTGCACTGCTCCTGTATGGTGAAGCTCCTCCAGTGACAGTGAGGGTCCCTGTGATTCACAGTCCAGGTCCAGCCCCAAGGCAGTTTCCATTATCAACCCCAGATGGATCCTCATACCTGAATTTCCTCTCTGATTTTCACACCTTAAGTGTCTTGTTCTCAGAGCTCGACCAGCAAGGTTTAACTGACAGTTCAGGCCTCAGACTCTTCTATACACCAGTGCTGAGGAAATATGACGCGGGTGTTATTGAGACTGGAGTGTGGGTCAGCCTTTATCACATGCTCCCACCAGGCTTAcctgaatacatttcacaagTACTTCAACACTTTCAGTCCACTAGCATTGCCCTCCAAGCTGTAGATCTAGACCTGGTAACAGCAGTGAACTTAGTAAGCTCCCTCATTGATTTTGTTGAGGACCTGCGTATGCAGTTTGACACATTTGAGGAAAAAGCAAAGGACACGTCAGATAACGTTTCACAAGAGTTCAAGGtcTCATCTCGATGTTCCCTGTTGCTTCCCTTCCCTTAG
>TU4215
cttgatttatataaaaaatataatactttatTCCCAACTAGAAAAGTCAAAACATGTAACTTTTTGGTCACACTTCTCAACAGACAGTACATAGACTGTCAAATGAACAGTCACTTTTACAAACAAgctattaattaatgtatccaAGCAGTTAACAAGAAtgcatttaactttaaattaagttagacaactgtacaaaaatatgtacaatatttacagcaataatacaataaaaggaAAGAAGCTACGACAAATCATCCAGTCTATATTTGACAgaatgctgatttttttttttttacagtaaccTGAATCAGCATGTcaaagtcaatgtttttttcagtgctGTTTCCAATTTGTGTAGCACATTCACCTAGCACCTTGTCTTGGTGGATGACTGTTTTTGGCAAGTGCTGAAAATGTAACCTGCCATCATCACTGATGGAGTTCTGCAACAGTACAAATCACAACAGCACATTCATCTAGCACTCGGGGAGGCAAAGGATTAAGGTTCCCTTTGGGTTACCATCTTCACCCATCGTACCATAAGTGCTATGTGTTTTAAAACTGCCAGGTCAGTGGGATGCCCACCACAGTTTAGGGGAATAATAAAATGGCATCTGCCAATTTTTCATAAACGTCTTGTTGTTGTGGAATACAACTAATAGTGCAGTATTCATTTGAGGCTGCAGGATAGCCCCCTGTCTTTCATACCCTCTTTGGGGCAACTGTCTAAGAGGCAAGTGGCCTTAGACATATGTCAATagatacacatgtatatattcatattattttgtttcttcataaaaaatacagaaatgcaaaatatgttgTGCTACAAATGAGATGGATATCTGTTCAATTCAAGTGAAAAGTCAATGGTGTTTGTGGCGCTTTTATGCCATGTCTCCAAGCATTTTCTTGTAGTACATGGACTGGAAGATGTCATTCTCTCCGGGACAGTTGTAGTGGCAGGCGCAGGTCTTGATGAACATCATCTGCTTCTTCATCATCTGGCCGTCGGGGCACTTGAACTCCATGGGCAGAGTGGTGGTTCTGTGGGGGGTGCAGCAACGGCCATCAGTGCAGACGCCACAGAACTTGGGCCTGTAGGTTTTGGTGGTTGTGCAGCCAGATAACTCAAATTTCATGGGCTTAGAGACCCGAGGAGTGCGGATGCACTTTTTCCCTTTCTGATGCTCTTCTCCAGATGGGACTCGCAGGGCCTGACCATGCACAGTCTGGACTGCTTTTCCAGTCTGCACGCCCTGTTGTCGTTGGTGACTCTGGTGGATATGCCCAGGCCGCAAGTCTTGGAACAGGCGCTCCACTCAGTGGTCTGGACCAGGCAGTTCTCACGCATCATGGAGGGGTCAGGACCATAGGTGTCTTCCTCTCTGTAAGCTGAGATGCAAAAACGAAAGGAGATCAAAATTAAGTTTCTCCATTTCTCCAAGTTTTT
>TU4227
aggGCTTTATGTATCCTCCTCATGTTGGACTTTCTATTGGTACATCATTAGATCCTGTATATATACTTATGGAAGTCCATTATGATAATCCAACACATCAACAAGGTTTAACTGACAGTTCAGGCCTCAGACTCTTCTATACACCAGTGCTGAGGAAATATGACGCGGGTGTTATTGAGACTGGAGTGTGGGTCAGCCTTTATCACATGCTCCCACCAGGCTTAcctgaatacatttcacaagGTCATTGTACCAAGGAATGTCTCCAAGAGGTAGGCTTAATTTCACAGATAAAGGGCATAATGGTGGTTAGTTTTAAGTAGTGTAATTTAGTACCAATACAAATCTaatgggaaaataattaaacaaattgtaccattatttttt

Function

symbol description
moxd1 Predicted to enable copper ion binding activity and dopamine beta-monooxygenase activity. Predicted to be involved in dopamine catabolic process; norepinephrine biosynthetic process; and octopamine biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space and secretory granule membrane. Orthologous to human MOXD1 (monooxygenase DBH like 1).
ctgf connective tissue growth factor (insulin-like growth factor-binding protein 8)

NR:

description
PREDICTED: connective tissue growth factor-like

GO:

id name namespace
GO:0030903 notochord development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003828 False 1245 mRNA 0.54 12 19271965 19397686
TU4215 True 1459 lncRNA 0.42 2 19283995 19285806
TU4227 False 387 TUCP 0.44 2 19368193 19369266

Neighbor

gene id symbol gene type direction distance location
AMCG00003815 pcmt1 coding upstream 91453 19168766 ~ 19180512 (+)
AMCG00003816 NA coding upstream 133765 19132983 ~ 19138200 (+)
AMCG00003812 tab2 coding upstream 187012 19073792 ~ 19084953 (+)
AMCG00003814 cdk19 coding upstream 240218 19017005 ~ 19031747 (+)
AMCG00003813 cdk19,LOC103371529 coding upstream 268107 19003056 ~ 19003858 (+)
AMCG00003826 NA coding downstream 51186 19448872 ~ 19450273 (+)
AMCG00003827 NA coding downstream 232784 19630470 ~ 19631447 (+)
AMCG00003832 NA coding downstream 535488 19933174 ~ 19943837 (+)
AMCG00003833 NA coding downstream 546324 19944010 ~ 19945017 (+)
AMCG00003835 NA coding downstream 735087 20132773 ~ 20133355 (+)
G3391 NA non-coding upstream 185250 19084971 ~ 19086715 (+)
G3375 NA non-coding upstream 300841 18951252 ~ 18971124 (+)
G3373 NA non-coding upstream 321711 18949754 ~ 18950254 (+)
G3370 NA non-coding upstream 325834 18945582 ~ 18946131 (+)
G3269 NA non-coding upstream 726427 18544984 ~ 18545538 (+)
G3496 NA non-coding downstream 27321 19425007 ~ 19425344 (+)
G3534 NA non-coding downstream 315117 19712803 ~ 19713057 (+)
G3536 NA non-coding downstream 327641 19725327 ~ 19725709 (+)
G3548 NA non-coding downstream 499424 19897110 ~ 19897535 (+)
G3549 NA non-coding downstream 499899 19897585 ~ 19897910 (+)
G3108 NA other upstream 1119651 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 1129332 18131919 ~ 18142633 (+)
G3047 NA other upstream 1587977 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 2229371 17032570 ~ 17042594 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other upstream 3232325 16024871 ~ 16039640 (+)
G3751 NA other downstream 2151515 21549201 ~ 21549533 (+)
G3771 NA other downstream 2348164 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 2492837 21890523 ~ 21901865 (+)
G3799 med23 other downstream 2524950 21922636 ~ 21923787 (+)
AMCG00003874 NA other downstream 3285330 22683016 ~ 22769227 (+)

Expression


Co-expression Network