AMCG00003829


Basic Information

Item Value
gene id AMCG00003829
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 19474889 ~ 19478369 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003829
cctggataagggcgtctgccaagaaataataataataataataataatgtaaaggaAAAGCTACTTGTAACCATAATCCTTAACACTAACTAGTGTATGATTGTTCTTTAAACCAGGTAGAGACGTGTGTCATGTTTATAAGATATTTGATaatttttgccttttgtttcAGCGCCAGAGAAAGATACAAAAAGATCGCCTTGTTAatgatttttcaaatacattggccaTCTTCCAAAAAATTCAAAGGCAAGCTGCTCAGAAAGAGAAGGAATTTGTTGCCAGAGTGCGTGCCAGCTCAAGGGTATCTggTGGCTTTCCTGATGATGGCTTCAAAGGAGGAAATGTGTTACCCTCTGAGAGTGAACCCCCCTCCTATGTACAAACCCAAGCAGATGCCATTACAGAAGAGGATCTTATGCTTatcaaagaaagagaaaccacCATCAGACAACTTGAAtctGATATTTTGGATATTAATGAAATCTTCAAAGATTTGGGAATGATGATTCACGAGCAGGGAGACACTATTGGTAAGACTCTGTTTTACTGTCTCGATctatttaaaagcagaaatgatCATATGGTATGTTACAGACAGTTCTTTCTCATTTTGTAATGCagttatatttctaaaacatatattattactagaaccagttatttttatttattttaaaattgatatatttttgaagAGGGGGTAATGATTTAAAGATTTTCATGTGCAAAGATCTTGTGGTTTCTCCAGTTCCAGATTCCTTTAAATGTGGAGTTGTGATCTGAAACTAATTTCTTGCAAAGATACATTTACCCAGACATTGTAGTCAGAGCAGGTTATGTGCAGTGTTCCGTAATTTCCTGTAATTATCTTCAGTTTACGGAGATACATACAGTAAAGGTGAAGCGAaccattatattaaatataaaaaggtaTTTAGAAGAATGAAAACAGTCTTCTTCTATATTCATTTATTGACCTTCATGTAACTTAAATGTAGATGCATTTTCATAACTGCTCTGGTAAGTTGAGTTAACCCTGAGCATTGTGCTTTGTATTCtacatttcacattgaaaaCTAAATGCAGACTTCACAGTAAACTAACTTTGGACAGACTGCATGATTTAATTACTAGAATTCTGTGTGGAATCGGTTCAGATGGCCCCCTGAGAGAGCCACACTTGCACATACACAATGAAGTGTCAGACTGACTGTTGATGATGTCACAGTCCTAAATGCAtcaattaaatgtgttgaacaaacagatctctaattgcttttaataaacCCCACTGAGAATTAAGGGTCCTCAAAGAGCTGGCCTGCGCCCTTTGTTAGAGAAAAGAGTCCTGTGGggtttttaaatttattttgaactttcTCCCTGAGTTTGTTGAAGTAGTTCTGCTAATATATGTAAACCATCAAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003829 True 1431 mRNA 0.35 4 19474889 19478369

Neighbor

gene id symbol gene type direction distance location
AMCG00003824 NA coding downstream 84170 19388365 ~ 19390719 (-)
AMCG00003823 ctgf,LOC106571301,LOC107683930,LOC107737382 coding downstream 187706 19283996 ~ 19287183 (-)
AMCG00003822 map3k5 coding downstream 234294 19201663 ~ 19240595 (-)
AMCG00003821 NA coding downstream 278213 19180679 ~ 19196676 (-)
AMCG00003818 lats1,LOC107742997 coding downstream 305238 19152616 ~ 19169651 (-)
AMCG00003830 NA coding upstream 144240 19622609 ~ 19624841 (-)
AMCG00003831 NA coding upstream 198760 19677129 ~ 19677768 (-)
AMCG00003834 LOC101882414,LOC101885221,LOC107674786,LOC107572727 coding upstream 311024 19789393 ~ 19789825 (-)
AMCG00003837 NA coding upstream 598746 20077115 ~ 20078155 (-)
AMCG00003838 NA coding upstream 1025730 20504099 ~ 20512976 (-)
G3482 NA non-coding downstream 117650 19356645 ~ 19357239 (-)
G3470 pcmt1,LOC107554157 non-coding downstream 294378 19175572 ~ 19180511 (-)
G3405 NA non-coding downstream 388197 19084704 ~ 19086692 (-)
G3403 NA non-coding downstream 395224 19079434 ~ 19079665 (-)
G3402 NA non-coding downstream 397025 19077456 ~ 19077864 (-)
G3535 NA non-coding upstream 234466 19712835 ~ 19713052 (-)
G3552 NA non-coding upstream 421600 19899969 ~ 19900381 (-)
G3553 NA non-coding upstream 423713 19902082 ~ 19903092 (-)
G3554 NA non-coding upstream 429661 19908030 ~ 19908341 (-)
G3584 NA non-coding upstream 550494 20028863 ~ 20416071 (-)
G3517 LOC101154678 other downstream 49523 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 101664 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 1322508 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 1332208 18135379 ~ 18142681 (-)
G3181 NA other downstream 1529947 17942577 ~ 17944942 (-)
AMCG00003893 NA other upstream 4051150 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 4262216 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 4785538 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 6419565 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 6487051 25965420 ~ 25998628 (-)

Expression


Co-expression Network