AMCG00003840


Basic Information

Item Value
gene id AMCG00003840
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20890132 ~ 20898701 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003840
atggCATTAACATTAGAGGAATTTACTCAGTCACTGGATCCAAAAAGCCTTCCCAGAGTAATACAGATTCAGTCTGGGATATATTTTCAAGgttCTGTATATGAGATGTTTGGGAGAGAATGTTGTCTTCCTACTGGAGAAATCATAAAAGTCATAGGATTATCCATTGCCAAATTAACAGCAGAGATTCAGAAGGAGAATATCACACACAGTGTTATTGATCTACCACTGCACTACCCAGGCCTTTTCCAGATTGTAGCAGATAAAAAAGCATACCTCAGTGTTGGGGATATTCTGGAAAGTTTGCGGAATTGTCCAGACAGACTGGGTCAACCTGTTTTCAAGAGTACCAAAGACATACAGCTGGCTGATGGCACAAtaaaagaaggagagaaaatTATCTTGACATCGCTGACGAAGGACAACTCAGAAGAGTTTGTGAATTGCAAAGTGATACGTAAAGATAAGATGCACATTTTTACACTACCAAAGTCCCAGGAAGGAGAGTTCTATGAATGTGAAGATGATCAGTTTTATACACTTAAGGAAATAACAGAATGGAAAATGCCCAAGGGCAGGAAGAGAACAGTGAACCTGGCGAACTCTATGGCTGCGAGGGAAATGAATTTCTTTGACCTTCCTGAAAATTTCAAAGGAGAATTGATTCTCTCGCCTGTCTATGAACTGCAAGCCATAACAGCTGAAGATAAAAACTTAAGAATGCAAGatcGCAAAGATATTGTGCATATACCATCTAGCCTTGATGTGGAAGTTATAGATGTAACTGATAAGTTTGACATAAACTGTTTTGTGCTGCCTCTGACTCCAGCTGACATCTTCAAAAGACCACCAGAGGAATTCCCGATCATAGCAGAAATAATAGAGGGACCTGAGCAAACTCCAGATGAATTACATTTCCTCAGATCTTGTAATAAAGTAATTGTCCACCGTGCCTATGAAGTGAAACTCATTCTAGCCTCTGAAATACGCAGTGATGTACAAAGGCACTTCCTGATTCCTTTCACCTACAAAGGGAAATTTAAAAGAAGGCCCAGAGAGTTTCCCACTGCATATAACTTAGAAATTGCAAAGAGAGACAAGGAGCAGTTGCATGTCGTGGCAACAAAAGCTTTTGAATCTCACTATGAGGGGCTCGCTACAGTTTTTGTTGGAGATCAGTTCCTAGTTCAGAAGAGAGAGACCAGTGAAGTTATCTATGGTGAGACCTGTAAGATGGTGGAAGCACTGGCATGTGAGAAAATCGAAGGTAAAAAATATGAGCCTGTGCTGATCCCTATGTGCTTGGAAGGTGGTTTTGTGGAAGTGATTCATGACAAAAAGCAATACAACATCTTTGAGATCTGTGAGAAATTCCCCCTGCCCTTCAACGTTAAAGTCTCAGTGCGGGACCTTTCGATCAAAGAAGATATTCTAGCAGCCATACCTGGGCTGCATCTAGAGGAGGAAATCACTGACCCCTACCTTCTCATCACCTCCCTTGACTTGTCGGAGTGCTGGGAAGTCCCTGTAAATCGAATTAAAATGTCTCTGCAGCTGCTTCACAAGCCCGAGAAACAGAATCAGCTACCATTAGTTCGGACACTGGTGGAAGAGATCAGTGAAGACCATTATTACACCCTGAGAAGGTATATAACAGCAACACTGTGTCCCCCTCCTCGACCGCCAAAGAAGCCAATGCAGCCTCTGTCAAAGGCACTTAAACTGGAaccacctcagccaagaaggtCTGATGCTCCCAGCTCACCAAAGagtCCACATGTTAACATACCAAGACCAACAAAGCCCGTTAGCCCTGGCTGTGTGGAGCGGCACAATGCTGCACCAGAGTGTGACATTAAGGCGATGCCCAATAACCTGGTGGTTGTGAATAGCTTACAAAGAGCTAGCAGCTCTGAAAAATGTGCAGAGGAATGTGAAGACAGCAATAAACATGACTATGAGTACATTGAAGAAGACGAACTTGACAAAATAAGACAGAAATTCCAGAAAACGAATATCAATGACAATACAAATTGTAAGAAGAATGAAGGTAACCAGTATGAACACTCTGTTTCAGCAAACAACAGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003840 True 2091 mRNA 0.42 7 20890132 20898701

Neighbor

gene id symbol gene type direction distance location
AMCG00003838 NA coding downstream 377156 20504099 ~ 20512976 (-)
AMCG00003837 NA coding downstream 811977 20077115 ~ 20078155 (-)
AMCG00003834 LOC101882414,LOC101885221,LOC107674786,LOC107572727 coding downstream 1100307 19789393 ~ 19789825 (-)
AMCG00003831 NA coding downstream 1212364 19677129 ~ 19677768 (-)
AMCG00003830 NA coding downstream 1265291 19622609 ~ 19624841 (-)
AMCG00003842 LOC106607755,LOC106571353 coding upstream 9689 20908390 ~ 20920636 (-)
AMCG00003841 LOC108432850,LOC106607755 coding upstream 51734 20950435 ~ 20959586 (-)
AMCG00003839 LOC106607755 coding upstream 131378 21030079 ~ 21042693 (-)
AMCG00003848 NA coding upstream 337793 21236494 ~ 21238978 (-)
AMCG00003849 NA coding upstream 548854 21447555 ~ 21467681 (-)
G3655 NA non-coding downstream 7988 20831370 ~ 20882144 (-)
G3646 NA non-coding downstream 59033 20830832 ~ 20831099 (-)
G3626 NA non-coding downstream 291147 20594932 ~ 20598985 (-)
G3618 NA non-coding downstream 303382 20586520 ~ 20586750 (-)
G3617 NA non-coding downstream 310561 20579364 ~ 20579571 (-)
G3695 NA non-coding upstream 7212 20905913 ~ 20953407 (-)
G3735 NA non-coding upstream 541425 21440126 ~ 21440361 (-)
G3736 NA non-coding upstream 545443 21444144 ~ 21444618 (-)
G3737 NA non-coding upstream 546067 21444768 ~ 21445218 (-)
G3739 NA non-coding upstream 547991 21446692 ~ 21447250 (-)
G3523 NA other downstream 1383379 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 1464766 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 1516907 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 2737751 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 2747451 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 2630818 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 2841884 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 3365206 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 4999233 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 5066719 25965420 ~ 25998628 (-)

Expression


Co-expression Network