AMCG00003842 (LOC106607755,LOC106571353)


Basic Information

Item Value
gene id AMCG00003842
gene name LOC106607755,LOC106571353
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 20908390 ~ 20920636 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003842
GAAAACCACCCGGCAGCAGCAGAGTCCAGCAGATTGTTGGATGTGCCCCGCTATCACTGTGAAGGGACAGAGTCGCCCTACCAGACTGGACAGCTGCATCCTGCCATCCGAGTGGCTGATCTGCTGCAGCACATTAATTTGATGAAGACTTCTGATAGCTATGGATTCAAAGAGGAATATGAGAGTTTTTTTGAAGGCCAATCTGCTTCGTGGGATggatACCAAAGGCCAAGTCATTACATTGCTACTCaagGTCCAGTACATGAAACAGTGTATGATTTCTGGAGGATGATCTGGCAAGAGCAATCTGCTTGTGTTGTAATGGTTACAAATCTGGTTGAAGTAGGACGGGTGAAATGCTACAAGTACTGGCCTGATGATGCTGAAGTCTACGGAGATTTCAAAGTCACATTTGTGGAAGTTGAGCCGCTTGCAGAATATGTTGTTCGAACATTCACTTTGGAGAGGAGAGGTTTCAATGAATTGCGTGAAGTAAAGCAATTTCACTTCACTGGATGGCCTGACCATGGTGTCCCTTACCATGCAACTGGTCTGCTGTCTTTTATACGACGTGTCAAGATGTCTAACCCTCCTAGCGCTGGGCCTATTGTTGTTCACTGCAGTGCTGGAGCAGGACGAACTGGCTGTTACATTGTTATTGATATTATGCTGGATatggctgagagagagggagtcgTGGATATTTACAACTGTGTGAAGGCCCTGCGATCTCGTCGAATAAACATGGTTCAAACCGAGGAGCAGTACATTTTTATCCACGATGCAATTCTGGAAGCATGCTTGTGTGGGGAGACGGCCATTCCAGCCTGTGAATTTAAAGCTACTTACTATGACATGATCAGAATAGACTCTCAAAGCAACTCCTCTCACCTTAAAGATGAATTCCAGacacTGAATTCTGTGACCCCTCAACCCCAACCTGAAGACTGTAGCATTGCTCTCCTGCCTAGGAATCATGAAAAGAATCGCTTCATGGATATGCTCCCTCCTGACAGATGCCTGCCTTTTCTTATTACAATTGATGGAGAGAGCAGTAACTACATAAATGCTGCCCTAATGGATagCTACAGACAACCTGCTGCCTTTATTGTTACACAACACCCTTTGCCCAACACTGTAAAGGACTTCTGGAGGCTAGTATATGACTATGGCTGCACATCCATGGTGATGCTAAACGAGATAGATCTTGCACAGGGTTGTCCACAGTACTGGCCAGAAGAAGGAATGCTGCGCTATGGGCCTATCCAAGTTGAATGTATGTCTTGCTCCATGGATTGTGATGTGATTAGCCGTCTCTTCAGAATATGTAATCTTACCAGGCCACAGGAGGGATATCTAATGGTGAGGCAGTTCCAGTACCTGGGATGGGCCTCTCACAGAGAAGTGCCCGCTTCCAAGCGCTCTTTCTTGAAGATGATCTTGCAGGTTGACAAATGGCAAGAGGAATGCGAAGAAGGAGAGGGACGAACAATTATTCACTGCCTGAATGGAGGAGGACGTAGTGGAATGTTTTGTGCCATCAGCATTGTGTGTGAAATGATTAAGCGGCAAAACGTGGTTGACGTTTTCCATGCAGTGAAAAGTCTTCGGAATAGCAAGCCCAACATGGTGGAAAGC

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase kappa-like isoform X12

GO: NA

KEGG:

id description
K06776 PTPRK; receptor-type tyrosine-protein phosphatase kappa

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003842 True 1638 mRNA 0.46 13 20908390 20920636

Neighbor

gene id symbol gene type direction distance location
AMCG00003840 NA coding downstream 9689 20890132 ~ 20898701 (-)
AMCG00003838 NA coding downstream 395414 20504099 ~ 20512976 (-)
AMCG00003837 NA coding downstream 830235 20077115 ~ 20078155 (-)
AMCG00003834 LOC101882414,LOC101885221,LOC107674786,LOC107572727 coding downstream 1118565 19789393 ~ 19789825 (-)
AMCG00003831 NA coding downstream 1230622 19677129 ~ 19677768 (-)
AMCG00003841 LOC108432850,LOC106607755 coding upstream 29799 20950435 ~ 20959586 (-)
AMCG00003839 LOC106607755 coding upstream 109443 21030079 ~ 21042693 (-)
AMCG00003848 NA coding upstream 315858 21236494 ~ 21238978 (-)
AMCG00003849 NA coding upstream 526919 21447555 ~ 21467681 (-)
AMCG00003850 NA coding upstream 558729 21479365 ~ 21480223 (-)
G3655 NA non-coding downstream 26246 20831370 ~ 20882144 (-)
G3646 NA non-coding downstream 77291 20830832 ~ 20831099 (-)
G3626 NA non-coding downstream 309405 20594932 ~ 20598985 (-)
G3618 NA non-coding downstream 321640 20586520 ~ 20586750 (-)
G3617 NA non-coding downstream 328819 20579364 ~ 20579571 (-)
G3735 NA non-coding upstream 519490 21440126 ~ 21440361 (-)
G3736 NA non-coding upstream 523508 21444144 ~ 21444618 (-)
G3737 NA non-coding upstream 524132 21444768 ~ 21445218 (-)
G3739 NA non-coding upstream 526056 21446692 ~ 21447250 (-)
G3760 NA non-coding upstream 675213 21595849 ~ 21598381 (-)
G3523 NA other downstream 1401637 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 1483024 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 1535165 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 2756009 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 2765709 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 2608883 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 2819949 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 3343271 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 4977298 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 5044784 25965420 ~ 25998628 (-)

Expression


Co-expression Network