AMCG00003853


Basic Information

Item Value
gene id AMCG00003853
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21890523 ~ 21901865 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003853
TGCTGTTGGATATTTATAAGGTGTTTGCACGGGGAGACAGAAGGAGAGGAAAGTGGGATTTTTTCACAGGGTGTCATGGGACAATTGTGCTGCTTTCCTTTTTCGCGAGCTGAGGAGAAAATCAGTGAAAAGAGGGTCGCCGAGCCGGATGATGACGAACTAGTGAGCCTCAGTAAGAGACTGGTGGAGAATGCTGTCCTTAAAGCGGTACAACAGTACCTCGAAGAGACTCAGCAGAACAAAAACAGGCAAGCAGAAATCAGTCCACCAAAGACTGAGGAAAAGCTCAACACAAACGACAGCAAAAAATGAACCCTCCAGCTGTTATCCTGGACCCTAACAAGCCAGGGGGAGTCTTCTGAAGAGGCTGGCTCAGAGTCTCTGTAATGGAGGGATACAGAACAGTACACAGCCAAGGATTATTAGGGAGgtcctgaaactgaaaatgtattaaatatctGTAAGCATTGTTCATTGTGGAAATTAATAAGCTGGAGCCTTTCTAATGAGCAAGAGTCCCTATGCAGTTGTGTATATTTTACCCACTTCTTAAACAATTCTGTTTGTGACCTACATTTTTCAGCCTTCATGATACAGTTTCTTACTGTGACATTCAAAACCTACAATgggaagtgttttgttttgtcgtGTGTTTTTTAAGCGGTCCCTGGAATATATTGGGATACActattattagtgttttaaagcaaaatgcCATGAAGAAATCCTTTGAATCTTTCTACAGAATAATGATCTCCTCTGAAGAGCACATTAGTctattttttctaattattttgtgaTGAAAATGGAGGAGGGTTAAAGGACACTAACCTGACACATTATTTCTAAAGGAAATCTTTGGTTTTGCTCCAGTAAGGGCCTGCCACTTCCGTTGGTATCAAGCACCGCAAAGACAATCATGATCTTTACTAAGCTAAGCATCACTACAGGTCTTCACTGTATTTGTAAACACGTTCATTAAACATGCAGTTTTCTGTAGTTGGACTATGCAGCGAAAACTATGCTGTGGAAATTGTTTACATCATTTGTTGTTCATGAAGTGTGTGTACAAACTAATCGATGAAGAAGAAAAGGCAACTGACATCAATTGATCTGTAATATGCAggttcaatttattatttttccattcttcAGTTAAGGGGCAGCCAAATAGAGCagctttagtttttattttaaacacaagtaCATTCTGTCTTCTTTTTTAGGCAAAAGACGTGATGCAGACTTCATTAGGAAGGCTTTGCATAGGGAAACAGTGGCTCTGTTGAAGATCAACAAGCAGATAAAACAGCTTTTGTCTCATCCAGTAACACTCGCAAGGATACGCTCGGAGATTGCAGGAGCGGAAGTCCGGCCCAAAGCCAGCAAGCAGGTGCACTTGACTGGAGATGTTCATCTGTCTCACCTTTGATTGGTGGGATGGGATGTGATAATTTAACACAGGAGGTCAAAGGAGCTACAGACTTctcaaaataaagtgcacatCCAGTTGTTCTGCTGGGTGAAATGTACTGTGTTTGTCATTGCTATACTTTTTGTATCTTtaggaaatatttgtaattgctGCACTACGATAGTTGATTGGCTTTAATGtcatttaagatttgtttttatgcttGTGGTTAAGGAGACTCTCAAATTACCGCTTCCAAGGTGGCCTTATGATTGGTTATGATTAAggatgttattttattactgtgtacttgaaaacattgtttttctccttgGCATATATACACCAGAACCTTAACAATAAATGTTCTGTCACAGCAAATGTAATTTGGTACTGTATTGAATGCTATATAAGTCATGTTCCTCACAGATGCATGCATAGTGtccaaatacatatatatctaatatatatatacacatttttatagagatttttttgtaacaattatatattaaaaaggcaGTGACTGAAATGCAATCACCAATGAACCCAACTATTGCAAGAACATATTGACTTTTTCCAAAATAatgtcaaaaataatacattgatttttaaaattgtagCTTTGCTTAAAGTGTTCTTGCTTGTgaacaaataaaaatctgtCCCTTGTTTGGTCTGAGATTTCAGTCTGTAGAGGAACTGCTGTGTAAAAATTGCAAACATTTAACCTTGATGTTTTTATGTTAAAAACACCAAACATTTATCAAGAACCTAATCTGTTATTCCAACCTGGATTTACAGAACACCACATTTACCAATAAACAACATTTTGCCTTTTTACGGCATTGATCGAACGATCAAGTGtcactgtttctctctcctggcTTCATCAGGATTTGAAGAATAGACTTGTTCAGATAAATGCCAGAAAACAAGGTGAAAATATCTTCCTATGTAGTGTGAATTGGAGAATGCGTCTCATGAGGAAAGATCACTACCTCCTTATTCAGTATAA
>TU4577
AAGCTCATTCCCTCCAAAGCACTGCTGAGAAACGGGTGCTGTTGGATATTTATAAGGTGTTTGCACGGGGAGACAGAAGGAGAGGAAAGTGGGATTTTTTCACAGGGTGTCATGGGACAATTGTGCTGCTTTCCTTTTTCGCGAGCTGAGGAGAAAATCAGTGAAAAGAGGGTCGCCGAGCCGGATGATGACGAACTAGTGAGCCTCAGTAAGAGACTGGTGGAGAATGCTGTCCTTAAAGCGGTACAACAGTACCTCGAAGAGACTCAGCAGAACAAAAACAGGCAAGCAGAAATCAGTCCACCAAAGACTGAGGAAAAGCTCAACACAAACGACAGCAAAAAATGAACCCTCCAGCTGTTATCCTGGACCCTAACAAGCCAGGGGGAGTCTTCTGAAGAGGCTGGCTCAGAGTCTCTGTAATGGAGGGATACAGAACAGTACACAGCCAAGGATTATTAGGGAGgtcctgaaactgaaaatgtattaaatatctGTAAGCATTGTTCATTGTGGAAATTAATAAGCTGGAGCCTTTCTAATGAGCAAGAGTCCCTATGCAGTTGTGTATATTTTACCCACTTCTTAAACAATTCTGTTTGTGACCTACATTTTTCAGCCTTCATGATACAGTTTCTTACTGTGACATTCAAAACCTACAATgggaagtgttttgttttgtcgtGTGTTTTTTAAGCGGTCCCTGGAATATATTGGGATACActattattagtgttttaaagcaaaatgcCATGAAGAAATCCTTTGAATCTTTCTACAGAATAATGATCTCCTCTGAAGAGCACATTAGTctattttttctaattattttgtgaTGAAAATGGAGGAGGGTTAAAGGACACTAACCTGACACATTATTTCTAAAGGAAATCTTTGGTTTTGCTCCAGTAAGGGCCTGCCACTTCCGTTGGTATCAAGCACCGCAAAGACAATCATGATCTTTACTAAGCTAAGCATCACTACAGGTCTTCACTGTATTTGTAAACACGTTCATTAAACATGCAGTTTTCTGTAGTTGGACTATGCAGCGAAAACTATGCTGTGGAAATTGTTTACATCATTTGTTGTTCATGAAGTGTGTGTACAAACTAATCGATGAAGAAGAAAAGGCAACTGACATCAATTGATCTGTAATATGCAggttcaatttattatttttccattcttcAGTTAAGGGGCAGCCAAATAGAGCagctttagtttttattttaaacacaagtaCATTCTGTCTTCTTTTTTAGGCAAAAGACGTGATGCAGACTTCATTAGGAAGGCTTTGCATAGGGAAACAGTGGCTCTGTTGAAGATCAACAAGCAGATAAAACAGCTTTTGTCTCATCCAGTAACACTCGCAAGGATACGCTCGGAGATTGCAGGAGCGGAAGTCCGGCCCAAAGCCAGCAAGCAGGTGCACTTGACTGGAGATGTTCATCTGTCTCACCTTTGATTGGTGGGATGGGATGTGATAATTTAACACAGGAGGTCAAAGGAGCTACAGACTTctcaaaataaagtgcacatCCAGTTGTTCTGCTGGGTGAAATGTACTGTGTTTGTCATTGCTATACTTTTTGTATCTTtaggaaatatttgtaattgctGCACTACGATAGTTGATTGGCTTTAATGtcatttaagatttgtttttatgcttGTGGTTAAGGAGACTCTCAAATTACCGCTTCCAAGGTGGCCTTATGATTGGTTATGATTAAggatgttattttattactgtgtacttgaaaacattgtttttctccttgGCATATATACACCAGAACCTTAACAATAAATGTTCTGTCACAGCAAATGTAATTTGGTACTGTATTGAATGCTATATAAGTCATGTTCCTCACAGATGCATGCATAGTGtccaaatacatatatatctaatatatatatacacatttttatagagatttttttgtaacaattatatattaaaaaggcaGTGACTGAAATGCAATCACCAATGAACCCAACTATTGCAAGAACATATTGACTTTTTCCAAAATAatgtcaaaaataatacattgatttttaaaattgtagCTTTGCTTAAAGTGTTCTTGCTTGTgaacaaataaaaatctgtCCCTTGTTTGGTCTGAGATTTCAGTCTGTAGAGGAACTGCTGTGTAAAAATTGCAAACATTTAACCTTGATGTTTTTATGTTAAAAACACCAAACATTTATCAAGAACCTAATCTGTTATTCCAACCTGGATTTA

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003853 True 2432 mRNA 0.38 2 21890559 21901865
TU4577 False 2251 lncRNA 0.38 2 21890523 21901648

Neighbor

gene id symbol gene type direction distance location
AMCG00003854 NA coding upstream 27724 21857490 ~ 21862799 (+)
AMCG00003847 NA coding upstream 354765 21491884 ~ 21535758 (+)
AMCG00003846 NA coding upstream 443402 21440114 ~ 21447121 (+)
AMCG00003845 NA coding upstream 451844 21348227 ~ 21438679 (+)
AMCG00003843 lama2 coding upstream 557299 21314074 ~ 21333224 (+)
AMCG00003855 NA coding downstream 48466 21950331 ~ 21958985 (+)
AMCG00003856 NA coding downstream 68631 21970496 ~ 21981590 (+)
AMCG00003861 NA coding downstream 199423 22101288 ~ 22106730 (+)
AMCG00003873 NA coding downstream 573222 22475087 ~ 22498055 (+)
AMCG00003871 NA coding downstream 611870 22513735 ~ 22523525 (+)
G3770 NA non-coding upstream 130724 21750527 ~ 21759799 (+)
G3767 NA non-coding upstream 157824 21732491 ~ 21732699 (+)
G3757 NA non-coding upstream 289663 21600632 ~ 21600860 (+)
G3754 NA non-coding upstream 292093 21595856 ~ 21598430 (+)
G3690 NA non-coding upstream 800269 21089595 ~ 21090254 (+)
G3798 NA non-coding downstream 15411 21917276 ~ 22016452 (+)
G3845 NA non-coding downstream 175127 22076992 ~ 22077458 (+)
G3863 NA non-coding downstream 268475 22170340 ~ 22172105 (+)
G3871 NA non-coding downstream 281378 22183243 ~ 22184811 (+)
G3878 NA non-coding downstream 295449 22197314 ~ 22200678 (+)
G3771 NA other upstream 129893 21745850 ~ 21760630 (+)
G3751 NA other upstream 340990 21549201 ~ 21549533 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 2492837 19271965 ~ 19397686 (+)
G3108 NA other upstream 3738209 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 3747890 18131919 ~ 18142633 (+)
G3799 med23 other downstream 20771 21922636 ~ 21923787 (+)
AMCG00003874 NA other downstream 781151 22683016 ~ 22769227 (+)
AMCG00003884 NA other downstream 1430736 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 1619961 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 1808164 23710029 ~ 23726144 (+)

Expression


Co-expression Network