AMCG00003858 (LOC107080806)


Basic Information

Item Value
gene id AMCG00003858
gene name LOC107080806
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21993333 ~ 21995243 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003858
ATGGAAGTTTGCAAAGGACGATTACTGGGCATTTCAGTGGCTGTTGCGCATGGATTTTTCTCTGGATCTTTAAATATCTTATTAAAATTTCTGATAACAACTTACCACTTCAACTACCTCACTCTCATCCAGTGCCTGACAAGCACCACTGCAGCGCTAACCCTGGAGACCCTGAGGAGACTGGGGAAGGTGGATGTGCCTCCCTATAGCCTGCATTTGGCCAAAGTGTTTGCCAGTGTAACAGTTTTATCCACGCTGCAGTCGACACTAACCCTGTGGTCGCTGCGGGGGCTCAGCCTCCCCATGTATGTGGTTTTCAAACGCTGTCTGCCTCTGGTCACTCTGGTCATCGGAGTGTGTGTCCTGAAGAATGGCATGCCGTCTGTCGGAGTGATAGCTGCGGTGCTCATCACTACTGGAGGAGCTGCGTTAGCAGGAGCTGGCGATCTGACCGGAGATCCCTTCGGCTACGTGACGGGGGTTCTTGCGGTCATCATCCATGCGTCATACCTTGTGATTATTCAGAAGACCAGCGCAGACAGTGACTATGGGCCATTGACCGCCCAGTATGCTATTGCTGTCACTGCCTCCCCGATACTGTTTGTCTGTTCATTTGCTAGTCTGGACTCTATTAATGCATGGACTTATCCTGGATGGACAAACCCTTTCATAACCTGCACTTTCTGTGCCTGTATCCTTATAGGCTGTGCAATGAACTTCACCACCCTCCACTGTACTTACATTAACTCTGCAGTCACTACCAGTTTTGTGGGGGTGGTTAAAAGTGTTGCCACCATCACAGTGGGAATGTTAGCCTTCAGTGATGTGGAACCTACACAGTTGTTCATCGCAGGGGTGGTGGTTAACACTTTGGGGTCCATAATCTATTGTATAGTCAAGTATTTTGAGACAAGAAAGAAGAGTAAATACCAAGACTTGGAGGAATCTTCAAAAGATGAAGAGCTACCAGGGGAACTGTACAAAGGTGAGGAACCAAAAGAAAATGGGCACTTAGAGATTGTGCCCAATGGAACTCTGGTCGGTCCCATTGACGGGAATGGCACAATGGAGTCCATTGAAATGCAAGCGCAAACCAACCCCCCCGAGGCAGAGGCAAAGAGTCTGTCTCTGAGTGACAGTTATGTAGGGGTGTGGAGATCCATACGGAACTTGAAGTTCATGAAGAAAGatacattaattgaaaatgaagaatTGCAAAGTCCCTAA

Function

NR:

description
PREDICTED: solute carrier family 35 member D3-like, partial

GO: NA

KEGG:

id description
K15281 SLC35D; solute carrier family 35

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003858 True 1227 mRNA 0.48 2 21993333 21995243

Neighbor

gene id symbol gene type direction distance location
AMCG00003859 med23 coding downstream 45258 21917334 ~ 21948075 (-)
AMCG00003852 epb41l2 coding downstream 195834 21782592 ~ 21797499 (-)
AMCG00003851 epb41l2,LOC100380760 coding downstream 227333 21758577 ~ 21766000 (-)
AMCG00003850 NA coding downstream 513110 21479365 ~ 21480223 (-)
AMCG00003849 NA coding downstream 525652 21447555 ~ 21467681 (-)
AMCG00003860 NA coding upstream 25053 22020296 ~ 22033776 (-)
AMCG00003857 hey2 coding upstream 43947 22039190 ~ 22043011 (-)
AMCG00003863 NA coding upstream 107483 22102726 ~ 22124213 (-)
AMCG00003864 NA coding upstream 179016 22174259 ~ 22179397 (-)
AMCG00003862 rnf217 coding upstream 197151 22192394 ~ 22202881 (-)
G3825 NA non-coding downstream 11817 21976824 ~ 21981516 (-)
G3768 NA non-coding downstream 260615 21732472 ~ 21732718 (-)
G3760 NA non-coding downstream 394952 21595849 ~ 21598381 (-)
G3739 NA non-coding downstream 546083 21446692 ~ 21447250 (-)
G3737 NA non-coding downstream 548115 21444768 ~ 21445218 (-)
G3864 NA non-coding upstream 168921 22164164 ~ 22170365 (-)
G3882 NA non-coding upstream 202358 22197601 ~ 22200678 (-)
G3885 NA non-coding upstream 229612 22224855 ~ 22225093 (-)
G3898 NA non-coding upstream 364542 22359785 ~ 22360096 (-)
G3984 NA non-coding upstream 776329 22771572 ~ 22771784 (-)
G3523 NA other downstream 2486580 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 2567967 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 2620108 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 3840952 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 3850652 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 1534276 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 1745342 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 2268664 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 3902691 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 3970177 25965420 ~ 25998628 (-)

Expression


Co-expression Network