AMCG00003872


Basic Information

Item Value
gene id AMCG00003872
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22528359 ~ 22536293 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003872
CAGATGCATGCTTGTTGGCGCGGCTTTATTTGAGTTATTGTGACCTGGGAGCATCACTGGTACCCGGATCCGGTGTGACTGCAACGTTCAAACCCGGCTTCTGTTAACCGGGGCCGTCTCGCTGTTTCAGATGTCTCTGTTTGTGGATGTGTTAGACCTCCTGCGATACCTGCTTGACTATTTTGGAGTTTCACCTGATATGctAGTACCAGTATGGGACAGTCAGCTCTGTGGTCAGTACCGAAGCATTATTCGCATGATTGGTACCAACTTACCTTTAAGTCCTTGTCCAAGAGTACATTTTCAGCAGATCACTCTGAGGGGACGGCATGGCAGTGTGGACTACCCAGACGAGGGCCCTGTAGTCCCATCTTTTGCAGATGTAATGTGGATAGCTAATGATGAGGAGGAAACCCTTTCTAGGTTCAGGAATGAGATCCATCCTGTCAAAGGCCGGCAAACGGTTCAATTTCTCCCAGCCTTTCCAATGCAAACCTCAATGCTGCCCCAGCCTGTGAAAAAAGTGTTCCAGAAAAAGCCCCAGCGTCCTCCAGATGCCGAGGCCTTTAACAAAATCACCGCCCTGGAGGATGAGCTCTTGCGGCTACGAGCACAGATTGCCATGATTGTAACCACACAGTCGGGTTCTGCCCGTTCTCAGTGTGAGCTGCCTGGCACCCCTGGGATGTCTCCTCTCCTCCCAGCGCTGACCTCTACTCCAGTCTCTGTGTCTCGGTGCGCTCCCCCGCCCCCTGCACCCCCATTACCATCCTCGCCCAAATGCAGGGCAGCGGACATTTCAGCCTTTGACTTGATCAGACAGCGCCGCGCCACCAACGTGACAAAGCGGAGCGGCAGAGAGAAGGACTCATCTCTGAAGTCCTCCAGCCTGCCCAGCATGTTGGATGTGCTGAAGGATCTGAATAAAGTTCAGCTGAGGTCAACTGAAAGGTCTCCGGGAGGTACACCAGTCATGAAGAAAGATAAGAAAAGAGTATGCCTCTCAGACCCAGCTTCCCTGATTGCTGAAGCCCTAAAGAGGAAAtttgcacacagacacaaagaggACTCATTTGACAAAGAAAACCGGTCATTTGAGACGTCACCATTTGGGAGTCCAGAGGTCCCCAGGatcGCCCTGCGCACCCTGGCCTGCCCTGGGAAGATCACTCCTGTAAGATCAGACCACGTGAGTCCGGCGCTCACAGGGAGAGCTGCTCTTGCTTGAACCAAAGCTGCTGTTTTCATAGttatatttctgtaaatgttttttttttttaaatgctttttaaattatccATGTTTatcaatttgtatatttgtttttaatacaatttgtatttgctttacttttgcctttttcttctcatgtggccttttaaatgtgtatattttgcttGAGAAATGAAAGGCTTTTTCTATATTGATGATCCTTAATGCGATTGTGGAGCTACCTACTGCAGTTAagtgtaacaattgtaataattctgcattgttttctttattcagttatatacttaaaaaaaaatatcttgaaatgcaaatgttgcctattaagtttttttttttttttcacacgtACAGTGTTCTGGATTTTTATTGCAAAATACCAATAGCCATTTAGTCTTTAAAACTGTGGCATGAAGCTTAAAAGATGCGAACATGTTGATCAGTAGAGCACAGCGTGGTGTTGGGCACCttaagggctggtttcacaaacCCAgatagcactagtcttggactatctaatattatttagttattatttaatcgtggtctgtgaaaccagctgtacaTGTTTTGGTCTTTGTTAATACCTGATATATTGCTACCCAGCTCTCGGTACATGCTTTTTCTGGGGGAATGCTTTGAACAATGGAGAGTTGACCAAAGAAGCCCTTTCCTCTGCCATTTCTAAAGAATAAAATGGGATGAGCCTGTAATAAAACTGAATCAAATCACTACACTGATGCTGCAGATCAAAGTCTGGTATAATAAAGGATATTATATAGAAGAATACATAGCTtcagttatttcattttttccctcaAAACCAGAGTGAAAGAAGGATAGCAGAGATGATCAACTGttgtaaaaaagaaagactATAACTGAGCTTCTTATGCCAGTATAAATATAAttcttttcaaacattttattaaaaaatggataATGAAAAATGAGGTGCACTTAATATAATTGGAGAGCCATATGAATTGCATTTCTCTGACAGAAGGTTTCTTAGTTTACGTTGCTAGAAGTCGAGGTATTAATCCAACATTgctcaaaatgaaaacatctaaATGCGAATGTATTGAAGCACACAAAGTGACATTTCCTAACACTTGTTCAGTTACAATGCAGGGAAAAGTATGAATAGGGGTTCTACTTATGttttgtacagaaaaaaataataaataaattaggaggcctatttaattatttcagaatgTTTAACTACAGTAggtttgtataaaatgtaacttttataaaaataataattaaaagcctGTTTTCCACTTCATCACAGTGTTTGGAAAATTATTctacatatgcatttaaaatgtatccaagTATAAATGGCTGCCTACTTGATATTTCAAGGTGTTTATATTTACCtgaaaaaatgtacagtacatggTGTCAATGTGAGTGGTATTACTACAATATCAATGAAATGGAAAGCAGAAATTGTGCGATACATAAAATTgacaaattatttgttttgcttgtcaac

Function

GO:

id name namespace
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003872 True 2737 mRNA 0.41 8 22528359 22536293

Neighbor

gene id symbol gene type direction distance location
AMCG00003871 NA coding upstream 4834 22513735 ~ 22523525 (+)
AMCG00003873 NA coding upstream 30304 22475087 ~ 22498055 (+)
AMCG00003861 NA coding upstream 421629 22101288 ~ 22106730 (+)
AMCG00003856 NA coding upstream 546769 21970496 ~ 21981590 (+)
AMCG00003855 NA coding upstream 569374 21950331 ~ 21958985 (+)
AMCG00003876 NA coding downstream 287477 22823770 ~ 22829038 (+)
AMCG00003878 hbs1l,LOC107756395 coding downstream 308050 22844343 ~ 22859805 (+)
AMCG00003877 LOC107571660 coding downstream 335212 22871505 ~ 22882861 (+)
AMCG00003879 sgk1 coding downstream 505530 23041823 ~ 23046232 (+)
AMCG00003883 NA coding downstream 525667 23061960 ~ 23065930 (+)
G3915 NA non-coding upstream 26530 22500917 ~ 22501829 (+)
G3914 NA non-coding upstream 27533 22500527 ~ 22500826 (+)
G3907 NA non-coding upstream 123505 22402604 ~ 22404854 (+)
G3886 NA non-coding upstream 288261 22236096 ~ 22240098 (+)
G3884 NA non-coding upstream 303258 22224718 ~ 22225101 (+)
G3991 NA non-coding downstream 332585 22868878 ~ 22869139 (+)
G4057 NA non-coding downstream 729977 23266270 ~ 23345005 (+)
G4059 NA non-coding downstream 779041 23315334 ~ 23322675 (+)
G4058 NA non-coding downstream 779335 23315628 ~ 23319122 (+)
G4071 NA non-coding downstream 825743 23362036 ~ 23362447 (+)
G3799 med23 other upstream 604572 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 626494 21890523 ~ 21901865 (+)
G3771 NA other upstream 767729 21745850 ~ 21760630 (+)
G3751 NA other upstream 978826 21549201 ~ 21549533 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 3130673 19271965 ~ 19397686 (+)
AMCG00003874 NA other downstream 146723 22683016 ~ 22769227 (+)
AMCG00003884 NA other downstream 796308 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 985533 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 1173736 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 1302296 23838589 ~ 24042885 (+)

Expression


Co-expression Network