AMCG00003875


Basic Information

Item Value
gene id AMCG00003875
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22790248 ~ 22801229 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003875
ATTAGATCGGAATACACGTTCTCTCTGTGCGCATCTGGAGTCGTTGAAAAGACGCAGCTCCCCAAAGGGTCACTGGTTGTATTGTAGACTTGGGGGTCTCACTGTGTCCGCTGTGCTCGGTGTTCAGTGTTGGCGTTTCCAGTGCAGTAGCCAGTTTAAGATGACGGTGTGAGGCGCTGCGTGTCTTGGCGCACATGTGAGCGGCAGATGAGGTGTCAGACTGCGGCGCTGCGGAGCTGCTGCCCGGGCGCGCTGTGCAGTGTTTACAGTTCTGATGAGGATGAAGAAGAGATTGAAATGTATGATCACGACTATGATGGGCCAATGCCAAAGTCCGGCAAACGACATTTAGGGAAAACTCGATGGACCCGTGAAGAAgacGAAAAATTAAAGAAACTCGTTGAACACCATGGCACTGAAGATTGGAAAGTtattgccagtttccttcctAATCGAACAGATGTGCAGTGTCAACATCGGTGGCAGAAGGTATTAAATCCAGAACTCATTAAGGGGCCGTGGACTAAGGAGGAGGATCAACGGGTGATTGAACTTGTGCAAAAATATGGTCCCAAACGCTGGTCTGTCATCGCAAAGCACTTAAAGGGAAGGATAGGAAAGCAGTGCAGAGAGCGATGGCACAATCACTTGAATCCAGAGGTGAAGAAAACATCGTGGACAGAGGAAGAAGATCGAATTATTTATCAAGCGCACAAGAAACTGGGAAACAGATGGGCTGAAATTGCCAAACTGCTACCCGGAAGGACTGATAATGCTATCAAGAACCACTGGAATTCCACTATGCGAAGAAAGGTTGAACAGGAAGGTTATCTGCAGCACTCCCCCAAAACAGGCCCATCAGCACTAGCCGCAAATTACACCAAGGCCAACCACATCATGAGCTTCGCCCAATCCACACCCTCTCAGATACAAACAACACAGTCCCCCATGAATGGAGACTATCAATACTACCACATCCCTGAACAACCGAGGATTGCTGGTCAGGTCTCTTATTCTCTGCCTCTCCATGTGAACGTATTGAACGTACCCCAACCTGCTACTGCTGCTATTCAGAGACACTATAATGATGAAGATcctgagaaagagaaaagaataaAGGAATTAGAGTTGCTACTAATGTCGACTGAGAATGAACTGAGAGGGCAGCAAGCAATACCAAGCCAGATTTCAAACTACTCAGGATGGAGTGGGGCCACAATGGCTGACAGTTCAGGAACTCATGGGGATAGTGTTACCATTTCCTGTTTGGGAGAGCAGCACCAGCAGGCAGCTCCCCCTCCGCCGCTGGACCATGGGTGTCTTCCGGAAGAGAGTGCCTCCTCTGCCCGTAGCATGGCACCGACCCAGAACAATGTCTTGTCACCTCTGCCCGAATTCATGGAATCAGTAATAGACTCGGATCCTTCCACTTGGGCTGATCTCAGCGGTTTGCATGGTGAAGAATCTGCAACTTCAAGTAGTTCAAAACTTGCATCTCCCCAATGCACAGAGCTTCAGAAAAAAGCGAACAGTGTACGCGAGACTAACGCACACGCTAACACAGGCTTACGCACCAACGTGCCGTGTCAGGGCTCTGCAGCTTCGCTCAGGTCATTGTCGGCCTCAAAGCACTGCATCTCGCCGTCAGTCAGTCTTCGCAAATGGAAAGGGGATGCCAGCCACTCGGCCAGTGGTGACAGTAGCATCTTCATGGTAGCAGACTTCAGCTGCTCCACTCCCAACTGTTCCCCAGTCAAAAGCCTGCCCTTCTCGCCCTCGCAGtTTTTCAATACTTCTAGTCAAGAAAATTTAGAGATCGATAATCCAACATTAACCTCCACCCCTGTTTGCACTCCAAAATCTATGATTGCAACTCCACTACATCGGGATCATACCCTCAAGCCTCAGAAAGAAAATGATGTATTCAGGACTCCTAACATCAGACGATCAATAATGGAAACGTCTCCCCGAACGCCAACCCCTTTCAAAACAGCACTTGCTCTTCAAGAAATCAAATACGGTCCTTTAAAGATGCTGCCCCAAACTCCCCACCTCGAACAAGACCTGGCAGACGTGATCAAGCAGGAGCCGAATGAATCTGAGGTCACGACCAGGATCCACGAGGACGAACCCGTTTTAAAGAAGATAAAACAAGAGGTGGAATCCCCCTGCGACCGACGGAGGAGTTTTCTTCAGTGGGAAGAAGAAAGCCTCAACGCGCAGCTCTTCCCTCACAGCACCTCGGTTGAAGATGCACCGAATCTTCTCACAAGTTCAGTGTTAATGATGCCTGTGTCTGAGAAAAATGAAGACAATCTGGTGAAAGCATTTCACGTTCCTCGAAGAGCTCATGGAAGCCCACTACAGCAGCTGAATACATGGGACTGTGGGAAGACTGACGATCAAATGCTTGTTACAGAGCAGGCCCGCAAATACATCACCACCTTCTCTTCCAGGGCTCTGGTCATGTGAGGGATTTAGCTAAGCATTAGTTTTGTAATGGaacttaaatacaaaaaacacttcaggttgatttaaaaagaaaaaatcaacaTTCCCTCTACTTGAAATTTGTGATGAACTGAGAGGGAATCTATTTGTTGTGGTACAACAGTTGGGAGCAGCACTGCAGTTTGTTACTGTGCATACACTTGTTGGATTTCGACCAACCAAagattttctaattattttttttatgacactTACCTACATTTCTAggtaaaactattttatatctgttaaatgtgtattttatgcatattaatataaagaacaacttgcataatttatttgttcaaaGATTGTTTTCCTAGCAATGGCAAAACAAGCAGTGTTTCACACCAGTATTTCTTCTTTTCTACTTACATTAGAATTAAATGTGAGCACAAAAGATGCACAGTGTAACAGTATGTACAACCATAcatggtttaaattaaatgcactgATAGGATTATTTTGTCAAAGCATTATTaaagaccaaattaaaataatcaagcctggggatattaaaaaaaaaatatattctatattttaaGTACTCTTGGTTTTAAACCgctattttttgtgtgtgagtgtgtgtttgcttgcttttgtttgttattttttactaGCTTGCttgaaaataatactgtatgaaaaagttatatttgaacaaatgtattatattttgtattttataatttaatttttttttgttttaaataaatgccaaaTGGAAAAGGATCTTTTGCTGCTAAAAACTTTAGCATAGACTGTTAGTGTCAAATGCATAGTAGAGCTTTACTAAATCAAAATTTACTGCACTAGCATTTGGAGAAATTCTAATTTCAATGTTATTTGTAAACACTGTTTTTGGGAGattacaatttgcattttgaatCTACATTTTGGGGGAAACACAGTTTTTGAAACAAACTACTTttcataatattgttttatacatacaaacattttttttaaagtgctttcTTTCTATGAAACTGCCGTAGCAAACATTTAGTGACGAACACTTtgcttacaaaatgtattattgtgctGCCTTCCTTAGCTTTCAGTGCAAATCCTCTGCActtatgttttttatacacaatTTATAAACTGCCttgtaaataaagtg

Function

GO: NA

KEGG:

id description
K09420 MYB, C-MYB; transcriptional activator Myb

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003875 True 3616 mRNA 0.43 16 22790248 22801229

Neighbor

gene id symbol gene type direction distance location
AMCG00003870 pde7b coding downstream 232361 22535586 ~ 22557887 (-)
AMCG00003869 NA coding downstream 258424 22515779 ~ 22531824 (-)
AMCG00003868 NA coding downstream 281731 22493463 ~ 22508517 (-)
AMCG00003867 ppp1r14c coding downstream 356361 22433618 ~ 22433887 (-)
AMCG00003866 NA coding downstream 416580 22361041 ~ 22373668 (-)
AMCG00003880 tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734 coding upstream 281709 23082938 ~ 23089596 (-)
AMCG00003888 rps12 coding upstream 514977 23316206 ~ 23319144 (-)
AMCG00003887 NA coding upstream 521100 23322329 ~ 23333559 (-)
AMCG00003886 sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 coding upstream 541015 23342244 ~ 23359840 (-)
AMCG00003895 NA coding upstream 841575 23642804 ~ 23653555 (-)
G3984 NA non-coding downstream 18464 22771572 ~ 22771784 (-)
G3898 NA non-coding downstream 430152 22359785 ~ 22360096 (-)
G3885 NA non-coding downstream 565155 22224855 ~ 22225093 (-)
G3882 NA non-coding downstream 589570 22197601 ~ 22200678 (-)
G3864 NA non-coding downstream 619883 22164164 ~ 22170365 (-)
G4000 NA non-coding upstream 54797 22856026 ~ 22856405 (-)
G4039 NA non-coding upstream 244086 23045315 ~ 23115685 (-)
G4101 NA non-coding upstream 598632 23399861 ~ 23423473 (-)
G4130 NA non-coding upstream 753047 23554276 ~ 23554524 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding upstream 1019461 23820690 ~ 23822698 (-)
G3523 NA other downstream 3283495 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 3364882 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 3417023 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 4637867 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 4647567 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 728290 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 939356 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 1462678 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 3096705 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 3164191 25965420 ~ 25998628 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021436 mybl2a coding NC_007134.7 CM002907.2 4348265 ~ 4357768 (+)