AMCG00003876


Basic Information

Item Value
gene id AMCG00003876
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22823770 ~ 22829038 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003876
TGGAAACAAACATGGCGGCAGGAGACTGAAGCACTCGCGGTTACATTGCAGTTTTATCGACAGCTGTTGATATTTGATCCTTATATAAAGGGTCGAAAGGAGCGAAGTCACAATGTCTCGACACAGAAATGTCCGCGGTTATAACTACGATGAAGattttgAAGACGATGATATATATGGACAATCTGTAGATGATGACTATTGCATTTCACCAGCcacagCTGCCCAATTCATTTATTCCCGTCATGAGAAACAGGCAGCCTTTGCAGAGCCCCTGGAGGAAGAGTTTGGGACAGAGGAGGAAATGCCGGTCTCTCCGAGCCTCAACCAGCACAATCTCAATGCTCTCGATCAAGgGAGACTGTTCTCCTGTCTTGATCAAATGCGAGCAGTACTTGGAGAATCTATCCCAGATCATGTACTAGCAGACGCTGCAGTCAGCTGTCAGTTTGATGCACAGAAGGCTTTGGATTTGGTGCTTTCTGAGGAAAGTTGGAGGACTCCAGCCACAACAAGTCAACTAAACACTTCATCAGCAGCGAAAACTGACAAAGGAGCCCTATTTTATTCATCAGATACTAGGATTCCTAAAAATCAAGAAACCATTACTGTACCATTGACTTTTTACGATACAAGTTTAACAACCCCTTTGAGTCTCGCTACACTGTTAGGAAAACCTGACATTCATTCAAGTGCTGGACAGCTCTGTAAAAACCTTTGTATGGAGTCTGCCGATGAGGGGGTACTGAGGTCTTTCAAGGAATCTTTGCCTAACTTTTCATTCTCAGGCAAGGATATTTCAGGTCAGGGCCTGTTGTATAAAAACTCACAATCGGCAGGTAACAACTTGGAGGAATCCAGTCTGGCACAGTTGATTTTGCAGCATGATCAGAGCCTTCAAAGAGGGGCAAATTTAAATAGTCAGAGTTTATCAAATATTCCTTTGATGACCAAAACAATGGAATCTGTTATGCAGAATAAGCCATCTCTGCAGCAGACATGTGGGGTTTTGAGTCAGCTTGAAGCTGCAGGCCAGCAAAGTACTAACTGTCTAGTAAGTCTGAATGCATTAAATCCATCTTTTCCCAGCACATGCTCCCTCACTTCCTCCTTGGGCAGTTTATCCTTAGCACTACATGAGCCCaatcagaataaaaaaacagaagcgTTTGGAAGCCTCCATTCTGTGTTACAAAGCAATCCGTTAGATATTCGCAGTAGTAATGGTAActgtaaagcaaaacataaGGGAAGCCCCTCCTTGGCAGACCTCATACAAGAACATAAAAGCAGCAGTCCAACTCTTTATACCTCCCTTCCTGATATTCAGAGCAAACCAGGGGAAACTCAAGCACTGCATTCATTGGTGTCTATGTCACTGTCACAGTGTGCAGCCGAGAATGCAGGTAAAATGGGTACTATATCAATAGCAGGGTCTTTGTCTTCACTTTTGTCCCCCAAAAATAAGAAATCCAACGAGGTAGAAAACTGCTCTGTATTAAGTTTGATCCCAAGCAGTGTTAGGAATGAACTCCAAACTCCCATGTTGCACACCTCTTCCGAACAAGATCTTAAGATTGATTTGAGTCAACTTATCCAGCAGCCACCCAATGCCAGCCTGAAAGCTgcttcaaaaaacaaattgaaggaTAAAAACGTTAGGAATGTTACGGACAAATCTTTGTTGATTTCTCGTAAGATACGGCTGTGGCAGGGCCCTAACGCCTCGGTTTTTGGAAAACCATCAGTATTTGCTATGAGTTTGTCTGTTCAATTCCCTTTTAagaatttcaagaaaaaaacagtttatacTCATCGTGCCTTTTTGTATAGCAAACAGATGCAACTAGTCAAGAAGAAAGACCAGGGacctttgtttaaaataacgCCTTTTGACTTTCAGACACCCTCGCCAGATGATATAATAAAAGCCAACCAAAAGAAGGCATTCATGCGAGAATAGCTCAGACATGCtaggttattttttaatttggactttttaattctaaaattgTCTTCAaacttatgtatgtatttatacacacagacatacatacatacatagaacaTGTAAGTACATCAGTTACCAGCattcaggtgtttttttaaacaaatttgtaaattaactttttgtAATAGTCTAGAGACTTCTACCTTGTTTTATGACTTTATACAGTGTGTTCAAATATGtagaattaattacaaaatgtttctttgctCTGTAATTGGTTTAACGTTCATGGTATTTGGCCTACAtgtctgtaaagttatttgatGAGTTGTAGTTTGTTGCAtcttaataatttttttttttggtaaatacatatattttttaacataattaaagcatattttctgttacaaagTTCAGATTTCCACTAAAGCTTAAATCTCAatcgacaacaacaacattctGGCTACTTTGTTTGCACTGTTTATTCCTTTGACTTTGGAAACACCTTAAGTCAGGTGAAATCAGATTGAAATGGTAAAATAGCAAACTGAACAACTGTTTATCAATGATCATGAAAATCTGTGAACAAATGGTACTGGTTTTAAATCATGTGACACATGCAGCATGGATAGTGATGTAGGTATCCACCTCAAAGATGCTGAGTGGCAAAGTTGTGGTCTAGAGACTGAGTGTGTTTTGGTGAACAGATAGGTTTCATCATCAGTCTTTTACCCAGCTACTTTAATCGTACCCATTCATGACAAAATGGGTTAACAGCACAAGATCTTCAGCAGCATAATGTAGTTACTGGGAAGCAATGTGTCAAGACTATGATTGGGGCaaatagaagtaaaataaagaatttaaaatataggtAATGCACTgataaatcaaataaagcaatataaacttattttattccaaTTGAAGAAAATGCCTTTTTCGAAGCCGGTATAGTGATGATTTCTAACACATAATGACTTCAGGTCCTAAAGGAGGTAGAAATACTTTATATCCTACTGCACAGACCATTTACcttttatagttttttaataGGAACGTTGTGCCCTTATAATACAATACCAGCAGGGTGGCAGTaaagaattaatttaaacatcagTCCCTTTTAGATGAATTTGGTGTAACATTTGACATCTTTCAGCTTCAAATGTTAAACGGCTCGTCTGGTTTCCATGGTTTTACGGGATGTCACATCCACATTAGAACTGAAAAGGTTTATGAATTATGTGTAGCATATCATATATTAAATACTCATATGAATAATAGGCCTACTTGGAAACAAAAACTAGTTAAAGACCTGCAAACCACAGTTTACAGAACATATAAGAAAGAGGACATGTTTCACAGGTGCGCAGACTTTGGAAATAATGAACAGTTGACGCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003876 True 3360 mRNA 0.38 5 22823770 22829038

Neighbor

gene id symbol gene type direction distance location
AMCG00003872 NA coding upstream 287477 22528359 ~ 22536293 (+)
AMCG00003871 NA coding upstream 300245 22513735 ~ 22523525 (+)
AMCG00003873 NA coding upstream 325715 22475087 ~ 22498055 (+)
AMCG00003861 NA coding upstream 717040 22101288 ~ 22106730 (+)
AMCG00003856 NA coding upstream 842180 21970496 ~ 21981590 (+)
AMCG00003878 hbs1l,LOC107756395 coding downstream 15305 22844343 ~ 22859805 (+)
AMCG00003877 LOC107571660 coding downstream 42467 22871505 ~ 22882861 (+)
AMCG00003879 sgk1 coding downstream 212785 23041823 ~ 23046232 (+)
AMCG00003883 NA coding downstream 232922 23061960 ~ 23065930 (+)
AMCG00003882 NA coding downstream 243976 23073014 ~ 23081514 (+)
G3915 NA non-coding upstream 321941 22500917 ~ 22501829 (+)
G3914 NA non-coding upstream 322944 22500527 ~ 22500826 (+)
G3907 NA non-coding upstream 418916 22402604 ~ 22404854 (+)
G3886 NA non-coding upstream 583672 22236096 ~ 22240098 (+)
G3884 NA non-coding upstream 598669 22224718 ~ 22225101 (+)
G3991 NA non-coding downstream 39840 22868878 ~ 22869139 (+)
G4057 NA non-coding downstream 437232 23266270 ~ 23345005 (+)
G4059 NA non-coding downstream 486296 23315334 ~ 23322675 (+)
G4058 NA non-coding downstream 486590 23315628 ~ 23319122 (+)
G4071 NA non-coding downstream 532998 23362036 ~ 23362447 (+)
AMCG00003874 NA other upstream 54543 22683016 ~ 22769227 (+)
G3799 med23 other upstream 899983 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 921905 21890523 ~ 21901865 (+)
G3771 NA other upstream 1063140 21745850 ~ 21760630 (+)
G3751 NA other upstream 1274237 21549201 ~ 21549533 (+)
AMCG00003884 NA other downstream 503563 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 692788 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 880991 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 1009551 23838589 ~ 24042885 (+)
AMCG00003910 zbtb2b other downstream 1289346 24118384 ~ 24129892 (+)

Expression


Co-expression Network