AMCG00003880 (tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734)


Basic Information

Item Value
gene id AMCG00003880
gene name tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23082938 ~ 23089596 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003880
CCCGAGTCCTCCGGCTCCACTGGGGGGCGCTAGTGTTTTTCTCCCAGCTCTGAATCTctatttcaaacacatttcctgGTACTGCTCCTCACAACAGGAAGCAGCTCGATTACGTCTTTGTGTGTTGCCGAAGATggcttttgttttatgtgtagaAGCTGTACCCTTTTAGGAAAATGTTTGTGTAGATCCTTCCACAACAAAAGCCTCTGAAACCAGGTTAAAGCGATAATGCACCTCTTTGACTAGGCCTGTGTGCTGGTAATTGCAGCGCAATGTGTAAAGCGCGGCGGTAGTTCAATAGCTGTTCAGTTCATTCTCTCAAGTTTAATGCAGAGTCTTATTTGGGCGCCAAGACGGACCAACGCCGTAGAAAGGAGGCATGAAGTAGGTGTGCTGGGTGCCGGGACACGGATTGTAGCTTCATCGGCCCTGTATTGTGTGTGGATGaatgtgtctgtttctctgATCTGAACTGCAAGCGCCATCACCACTGCGCCACCAGCCTCGAGAAGCGCCGGTTGCAGTTTAAGCACAATCATCCaggagctgagctgagctgagctgaagACAACACGGGATATCGTGGCGAGTCGTGGCATGCATCTCTGAAGAGCCGAGCATCACCTTTCCTAATGGAACCTGACAATGATGTTGCTCTGGACATTATCATTACCAACGTGGTGGCTGTGTTTAGGACAAGGTGCCATTTAAACCTCCGAACAATTGCGCTGGAGGGAACCAATGTCATTTACAAACCAGAGGTAGGGAAAGTTCTAATGAAGCTAAGAAAGCCCAGAATTACAGCTTCAATATGGTCCTCAGGAAAAATAATTTGCACAGGAGCTACTAGtGAAGAAGAAGCTAAAATTGGTGCCAGAAGATTAGCGCGTTGCCTACAAAAACTAGGTTTTAAGGTGAAATTCACAGAATTTAAGGTTGTCAATGTTCTGGCTGTATGCACAATGCCCTTTGAAATCCGACTTCCAGagtttacaaagaaaaatagacCCATTGCCAGCTATGAACCAGAATTGCACCCTGCAGCATCATATAGGATTAAAAATCTCAAAGCTACACTACAGATCTTCTCCACAGGCAGCGTCACAGTAACGGCTCCAAATGTACAGTTGGTCGCCACTGCTGTTGAACAGGCCTATCCTCTGTTGTttgaaagcagaaaaacaatccgataaaattgagaaatgttggttttaaaatgaaagcaccTTATTCATcgatacattttcagaattaaaGTCAGGCTCATACCTTAAAATGTCAAGTGTCAGTAAGGCACATTGTTTTTACCCGATTTTCAATAATACCTTTCATTAAGAATACTCTATTGTTCAGTGTTAACATGATACAGAGCTCCTGCTTACAAGATGTTGTCCTTCAAGTAATGTTTGTTCAGTAagactgaaatgtaatataGTGCACTTCTCGGTCAAAACAGCCACATTCTGTATGTGAGCatgtggatttaattttaagtcTTCAGATTTTGATGCATGAAcaccaaagaaaaacatgtttttaaatcacattcttAAACTCTCTGAGTACAGAGAAGCAATACACCAACAGACCTACATATTTGAAGCAAGAATTTTAACtagtatttttcaaataaatctgAGACATCTCTCCCTTGCATTTAAACGATGCTAtcactcaaaaacaaaaaagagttACACTTAATGTTTATGCAAGATCAGTGTGAATAGTCTTTATGGTATagttatcaaaataaaacctgactGAATAACTGAGTATTTCCATGAGTAACTGTTGCTAACCTGTTATCAGCATCTTGACATGAACATTTGAGTTGCATTATGaaggaaatgttttcagtatgtttatgacttttgtattttgtacaatAAAATGGAAGATAAAA

Function

symbol description
tbpl1 Predicted to enable general transcription initiation factor activity. Involved in embryo development and transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Orthologous to human TBPL1 (TATA-box binding protein like 1).

NR:

description
TATA box-binding protein-like protein 1 isoform X1

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03120 TBP, tbp; transcription initiation factor TFIID TATA-box-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003880 True 1906 mRNA 0.41 8 23082938 23089596

Neighbor

gene id symbol gene type direction distance location
AMCG00003875 NA coding downstream 281709 22790248 ~ 22801229 (-)
AMCG00003870 pde7b coding downstream 525051 22535586 ~ 22557887 (-)
AMCG00003869 NA coding downstream 551114 22515779 ~ 22531824 (-)
AMCG00003868 NA coding downstream 574421 22493463 ~ 22508517 (-)
AMCG00003867 ppp1r14c coding downstream 649051 22433618 ~ 22433887 (-)
AMCG00003888 rps12 coding upstream 226610 23316206 ~ 23319144 (-)
AMCG00003887 NA coding upstream 232733 23322329 ~ 23333559 (-)
AMCG00003886 sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 coding upstream 252648 23342244 ~ 23359840 (-)
AMCG00003895 NA coding upstream 553208 23642804 ~ 23653555 (-)
AMCG00003900 tulp4 coding upstream 671006 23760602 ~ 23786763 (-)
G4000 NA non-coding downstream 226533 22856026 ~ 22856405 (-)
G3984 NA non-coding downstream 311154 22771572 ~ 22771784 (-)
G3898 NA non-coding downstream 722842 22359785 ~ 22360096 (-)
G3885 NA non-coding downstream 857845 22224855 ~ 22225093 (-)
G3882 NA non-coding downstream 882260 22197601 ~ 22200678 (-)
G4101 NA non-coding upstream 310265 23399861 ~ 23423473 (-)
G4130 NA non-coding upstream 464680 23554276 ~ 23554524 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding upstream 731094 23820690 ~ 23822698 (-)
G4222 NA non-coding upstream 954072 24043668 ~ 24046142 (-)
G4255 NA non-coding upstream 1035255 24124851 ~ 24125052 (-)
G3523 NA other downstream 3576185 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 3657572 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 3709713 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 4930557 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 4940257 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 439923 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 650989 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 1174311 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 2808338 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 2875824 25965420 ~ 25998628 (-)

Expression


Co-expression Network