AMCG00003881 (tcf21,LOC107701707,LOC107571274,LOC107756361,LOC107723756,LOC107671849,LOC105018007)


Basic Information

Item Value
gene id AMCG00003881
gene name tcf21,LOC107701707,LOC107571274,LOC107756361,LOC107723756,LOC107671849,LOC105018007
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23135448 ~ 23137241 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003881
TCCAAAAAGAGCATGACAGAGCCCACTTTTTAAACACAGCACATGCATACTTTTCGATTGTATACCGTCGGTTTGCTGACCTTTCTTGCTTTAAGGCAGACTTGTTAACTGTGCTGCCATATAGAGAGCAACTTCCATCATGTCCACGGGATCCATCAGTGATGTGGACGAGCTGGTGGAGAGCGACATCCTGAAACTGGGCTCCGGCAAGGACTCGGGCACCTCCAACGACAGCACGGAGGAGAGCTGCAGTGGGGAGGGAGGCTCGCCGACGAAGACCAGGGCAGCTCCGGGGAAAAAACGCAAAACCTCCAGGAAAATGGCCTTGAACGGCGTGGCGCACGAAGGGAAGCAGGTCCAGAGAAACGCGGCCAACGCCAGGGAGAGGGCGAGGATGCGCGTCTTGAGCAAAGCCTTTTCCCGGCTGAAGACAACCCTCCCCTGGGTACCACCGGATACCAAACTGTCCAAACTGGACACCCTCAGACTGGCATCGAGCTATATTGCCCACTTGAGACAAATCCTGGCCAACGATAAATATGACAATGGCTATATTCACCCAGTCAATCTGacaTGGCCCTTTATGGTGGCTGGAAAACCAGAAAATGAGCTGAAAGAAGTGCTGAACACAACCCGATTGTGTGGAACTACAGCATCGTGATTCAACGAGTGGCTTTAAAAACTGATCAAACAACTAaccgaaaaagaaaaaaggaaaaaggaaaaactttagcttttaagaaaataatcaacaaaTCGACACGAGAGGGACCAAAACTTCAGACTCATTCCTCcaaaaaaggttatttaaaGTATGTTAAGTTTATGTTAGCCTTGCTGGATCAAGTGCTGTTGAATGTTTGTTCATATCATGCTAAATGCTTTATACAAAGTTTGCTATTATGTAGCTGCAAGTACTTTTATTAATGACTTTGACAGTCATTTCTGTACAAAagaacacatataaaatatattttctttaatcaag

Function

symbol description
tcf21 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; E-box binding activity; and protein dimerization activity. Acts upstream of or within artery development and branchiomeric skeletal muscle development. Located in nucleus. Is expressed in several structures, including mesenchymal cell; mesoderm; pericardial region; pharyngeal arch; and proepicardial cluster. Orthologous to human TCF21 (transcription factor 21).

NR:

description
PREDICTED: transcription factor 21-like

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0007530 sex determination biological_process
GO:0048536 spleen development biological_process
GO:0060425 lung morphogenesis biological_process
GO:0072162 metanephric mesenchymal cell differentiation biological_process
GO:0060426 lung vasculature development biological_process
GO:0048557 embryonic digestive tract morphogenesis biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0060435 bronchiole development biological_process
GO:0048286 lung alveolus development biological_process
GO:0060766 negative regulation of androgen receptor signaling pathway biological_process
GO:0060008 Sertoli cell differentiation biological_process
GO:0060539 diaphragm development biological_process
GO:0072277 metanephric glomerular capillary formation biological_process
GO:0060021 roof of mouth development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001658 branching involved in ureteric bud morphogenesis biological_process
GO:0014707 branchiomeric skeletal muscle development biological_process
GO:0005634 nucleus cellular_component
GO:0070888 E-box binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003881 True 988 mRNA 0.45 2 23135448 23137241

Neighbor

gene id symbol gene type direction distance location
AMCG00003882 NA coding upstream 53934 23073014 ~ 23081514 (+)
AMCG00003883 NA coding upstream 69518 23061960 ~ 23065930 (+)
AMCG00003879 sgk1 coding upstream 89216 23041823 ~ 23046232 (+)
AMCG00003877 LOC107571660 coding upstream 252587 22871505 ~ 22882861 (+)
AMCG00003878 hbs1l,LOC107756395 coding upstream 275643 22844343 ~ 22859805 (+)
AMCG00003885 eya4 coding downstream 100105 23237346 ~ 23313877 (+)
AMCG00003889 NA coding downstream 237052 23374293 ~ 23389309 (+)
AMCG00003892 NA coding downstream 273094 23410335 ~ 23423173 (+)
AMCG00003894 phip,LOC107708770 coding downstream 308581 23445822 ~ 23447419 (+)
AMCG00003890 NA coding downstream 322599 23459840 ~ 23520587 (+)
G3991 NA non-coding upstream 266309 22868878 ~ 22869139 (+)
G3915 NA non-coding upstream 633619 22500917 ~ 22501829 (+)
G3914 NA non-coding upstream 634622 22500527 ~ 22500826 (+)
G3907 NA non-coding upstream 730594 22402604 ~ 22404854 (+)
G3886 NA non-coding upstream 895350 22236096 ~ 22240098 (+)
G4057 NA non-coding downstream 129029 23266270 ~ 23345005 (+)
G4059 NA non-coding downstream 178093 23315334 ~ 23322675 (+)
G4058 NA non-coding downstream 178387 23315628 ~ 23319122 (+)
G4071 NA non-coding downstream 224795 23362036 ~ 23362447 (+)
G4089 NA non-coding downstream 228950 23366191 ~ 23369996 (+)
AMCG00003874 NA other upstream 366221 22683016 ~ 22769227 (+)
G3799 med23 other upstream 1211661 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 1233583 21890523 ~ 21901865 (+)
G3771 NA other upstream 1374818 21745850 ~ 21760630 (+)
G3751 NA other upstream 1585915 21549201 ~ 21549533 (+)
AMCG00003884 NA other downstream 195360 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 384585 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 572788 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 701348 23838589 ~ 24042885 (+)
AMCG00003910 zbtb2b other downstream 981143 24118384 ~ 24129892 (+)

Expression


Co-expression Network