AMCG00003882


Basic Information

Item Value
gene id AMCG00003882
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23073014 ~ 23081514 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003882
atttaaaCTAATGTCACGTCGGCTGTTTTTGGAGCCGACTAAAGGTTGGCATTAGTACTGAATAATCTGAATGTAACAAGGTTGCACTGTTATACGTGCAGTAATACTGTGGGCGGAGAGTCTGCGGCACAGCTCTTAAAAAACAAGGAACCTGTATGTGCTTTGAAGGACAACTAAAAGTTCTGCAGAAGAAGGTGCAACAAGTCTAAACTGCGATGACGATGCTTAACAAGTAACTATTAGTGTTGCAAACGACAGACAAGTCTTAGCAGAAAAGAATGGACCCTGATGGCTGTGGTAAGGTGAATTATGAATACCAGCCTATTGCGAAAGATCGCACTTTGGAGATTTTTCCCCAGAAATGTCTGGAAGCCAAGAAGAAAGgatGTGGCACGCTCATCCTTCTGGCCTCAGTAGTTGCTGCTATCAGTGGATTCATATTCGGCTATGAAATGGGAGTGATATCTGGGGCTTTGCTGCAGTTACAGGAAGTATTATCCCTCACATGTCAGAGACAAGAAATGGTGGTTAGTGCTCTTTTATTTGGTGCCCTATTACTTTCACTTGGCGGGGGATTCTTACTGGACACATATGGGAGAAAGTTTTCTATTATTGTAACTGCCTTCATTATCATACTTGGAAACATAATCATGACATGCGTCGTCTCCTACATAGCACTCATCATTGGTCGCGTCATGGTGGGAATAGCCATAGCACTATCAGGGATTGCATCATGCCTCTACCTTGCAGAAATTGCCCCACAAAATAAAAGGGGGCTTTTAGTGTCCCTGTATGAACTGATGGTCGTTATTGGGGTCCtcttaggttttgttttcagttatgcTTTTGCTTCTGTTTCCAATGGCtggaaatatatgttttgtattgtgaTCCCACCAGCAGTTTTACAAGCCATAACCATGTTTTTCCTGCCTGTGAGTCCCCGTTTCTTGATCAAGACGGGTCAAAGTGAAGCTGCTAGTGATGTTTTGAAAAGACTGCGAGCTTCTTCTGCGGTGGAGGACGAACTGAAGAGCATTCAGACGGCTCTGAAAGAGGAAAGCCAATACAGCTTTTCGGACTTGTTCAGGTCGAAGGACAACATAAGGACTAGGCTACTGATCGGAGTATTACTGGTCTTCTTTCAGCAAGTTACTGGGCAGCCCAATGTGCTGTTTTATGCATCCACTATCCTGAAATCGGTTGGCTTTCACAGCAACGAGGCAGCTACTCTCGCATCTACGGGTATTGGAGCAGTGAAAGTGGCCAGCACTATCCCGGCGGTCTTGCTGGTGGATCGCGTGGGAAGCAAAACGTTCCTGTGCATTGGGTCCATTGCCATGACAGTTTCACTGGCGACTCTGGGGGTCGTGACTTTCCAAAGCCACACGAACTGTATCAGCATCTGCCAGAATCACGCCAGTGTAAACCAAACCCACTGGATATACAATGCAACTACAGACTTTGCAATCAATGGAGAAGGGGTCTTTAAAATGACTGTAAACGCAACACCTGAACTCAGAAACCCCACCTCAGGCAACAGGCTGATGATGCATGATGATGGATGGAGTAATACAACAGGAGAAAGTCCTGCTAAGATTCCTAACACaggtttacaaattaaaaaagtgtctgGTACTTTAAAGTGGCTCTCCCTAGTCAGTCTGCTGGTTTACATTGCTGCATTTTCCATAAGTCTTGGTCCAatgGTGTGGGTGGTTCTGAGTGAAATATTTCCAATGGGGATCAGAGGCAAGGCAATGTCTGCAACTGCTGTAATAAACTGGGGTATCAACCTGATCATTTCAATGACATTTCTGACTGTAACAGaaaaaaTTGGACTCGCAAATGTAATATTCACGTATGCAGCGATGAGCTTTGCACTTCtggtttttgtggttttgtgcaTACCAGAGACGAAGGGACAATCGCTGGAAGAAATATCAAAGAAACTTGCCAAAAAgaacAACTCTGAAGACAGATGCTATTGGACAAAGCCTAAAACTGAAACCTCAAAGATTAAATGTGATAATTGATTAACCACTTTTACCTCAATTTGTTTTGGGAAAtttcacttaaatatatatatatagatatatagatatatagatatatgtgtgtgtgtgtgaagacagAAATTTGTATTCgttcatgtttaaaataagcTGACCTGTGAAGGGAGATTCATCCTTTCTTGTCTCTAACAATGTACCAACCTAATGGttatatactgtttattagttgttgttttttatgttccCCTAGGAAGAAATGTTGAGTGTGCAATgcatattgtgtattgtttatgtGTGAAATCAATGGTGGTGTGAGTAAATGTTTGAGTAGCTTAGGTAGACCATTTTAGACCAGCCAGACTCAGGGAGAGGGTCATCACACAAATGACACAGTGTAGCAGCTGCTGTGAATGGAAGATGTGTCAGATTTATTTCCAAAGGGATTTAGCATAATTTTTGAAAGAATTCCTTGTTGCACTGTATCAGATATCCCCATAGACtacaatgaaatgaaattacTCAATCTAGTATAAATGCCAATGGTGACACTCCAtcctgcaataaatacatatctgaCATTTTGGGTTGTTTATTTTGGGGGTATATATATCAGTACTTGGCAGATGCAACTTTGCCTGCTGCAAGTCTTTTTGGAAAGATGTAATGTTTACCCATCCCTCCTTGCATAATT

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG:

id description
K08149 SLC2A12, GLUT12; MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003882 True 2706 mRNA 0.42 6 23073014 23081514

Neighbor

gene id symbol gene type direction distance location
AMCG00003883 NA coding upstream 7084 23061960 ~ 23065930 (+)
AMCG00003879 sgk1 coding upstream 26782 23041823 ~ 23046232 (+)
AMCG00003877 LOC107571660 coding upstream 190153 22871505 ~ 22882861 (+)
AMCG00003878 hbs1l,LOC107756395 coding upstream 213209 22844343 ~ 22859805 (+)
AMCG00003876 NA coding upstream 243976 22823770 ~ 22829038 (+)
AMCG00003881 tcf21,LOC107701707,LOC107571274,LOC107756361,LOC107723756,LOC107671849,LOC105018007 coding downstream 53934 23135448 ~ 23137241 (+)
AMCG00003885 eya4 coding downstream 155832 23237346 ~ 23313877 (+)
AMCG00003889 NA coding downstream 292779 23374293 ~ 23389309 (+)
AMCG00003892 NA coding downstream 328821 23410335 ~ 23423173 (+)
AMCG00003894 phip,LOC107708770 coding downstream 364308 23445822 ~ 23447419 (+)
G3991 NA non-coding upstream 203875 22868878 ~ 22869139 (+)
G3915 NA non-coding upstream 571185 22500917 ~ 22501829 (+)
G3914 NA non-coding upstream 572188 22500527 ~ 22500826 (+)
G3907 NA non-coding upstream 668160 22402604 ~ 22404854 (+)
G3886 NA non-coding upstream 832916 22236096 ~ 22240098 (+)
G4057 NA non-coding downstream 184756 23266270 ~ 23345005 (+)
G4059 NA non-coding downstream 233820 23315334 ~ 23322675 (+)
G4058 NA non-coding downstream 234114 23315628 ~ 23319122 (+)
G4071 NA non-coding downstream 280522 23362036 ~ 23362447 (+)
G4089 NA non-coding downstream 284677 23366191 ~ 23369996 (+)
AMCG00003874 NA other upstream 303787 22683016 ~ 22769227 (+)
G3799 med23 other upstream 1149227 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 1171149 21890523 ~ 21901865 (+)
G3771 NA other upstream 1312384 21745850 ~ 21760630 (+)
G3751 NA other upstream 1523481 21549201 ~ 21549533 (+)
AMCG00003884 NA other downstream 251087 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 440312 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 628515 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 757075 23838589 ~ 24042885 (+)
AMCG00003910 zbtb2b other downstream 1036870 24118384 ~ 24129892 (+)

Expression


Co-expression Network