AMCG00003886 (sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206)


Basic Information

Item Value
gene id AMCG00003886
gene name sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23342244 ~ 23359840 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003886
AGTGAAGACCACAGACGAAATGAACTGATTATTATAATGGTATTTAAATACTGCTCCCAGCACGTTTACTTTATTCTAACAAGCGCTTACAAGAAGGGAAAACAACACCTTGCCGGTGAGATAGATCAGAGAAACAGTTTGAAGCGGGGCGCTGCGCCAGGATTATAGGATGGTGATCAGAGTGTTCATCGCCTCTTCCTCGGGCTCAGTAGCGATCAAGAAGAGGCAGCAGGATGTTGTGGGGTTCCTGGAAGCCAACAGGATCGTCTTCGAGGAGGTGGATATAACCATGCAGGAGGAGAAGAGACTGTGGATGTACAAGAACATGCCAGAGGAGAAACTTCCAGAGAAAGGGAACCCACTCCCACCTCAGATATTTAATGGTGAACAGTACTGTGGGGATTATGAGGATTTCTTCCAATCAAAGGAGAATAacactgtgttttcatttcttggaTTTAATTCCACGCCTTCGGTGAAGgATTCTGAATCTTAGGTGTTTAAATCCTGGAATTGGAGACCTTTTCATGTCCTGCATTATAACACTTCCTCCACCTGATCTTTCAACATGCCACTGCTGCTTTGCCAAATGTCGCTGCATCATTTTGCCTGCCAGGAGCCCCAGTGAGCCAGAGCTTTGCCATGAATGTTGGTCTTTAGATGTCTGTGAacttattcatataaaataggGCCTCTCTTTTTGCTGATACTTTGAATGCTAATGCTTTTGAATCATGCCTTATTGGGGATCTGGTTTTGTGTGGAAAATTTATATTGTGATGGGGATTTTCATTATTTAGGGTTTTAAATTAAGGCGATACAGAAAATCCAGGGGTTCGTCAGCTGAAGGCAACTATGACTAGAGGTGAGCCCATTCTGCTTTTGCAAACTGACCAACTTCACAATCTTTTGTACTGCAAAGTGAAACTGTCACAATTTATATACGCAGGGAAAATACTAAATGGGCAATGAAAATTCACTTCTATGCATATTTGATAccttgtttggttgttttgggTGAAATATGGGTTTTGGTCTCCACTGGCATGTGAATAGCATTATGTAGGTCAAAATGCTTTCATCCCTTCATTAAAATTACAAGTCTTTACGGTTGCCAAAAGTTGTATCATATTATAAGCATGCTATTACTGACTACAATAATTTTCTATATGCATATTGTGAGTTGCTTCTAACTCCCTTGAAcagtatgtttttgtaaaaataagttatcttttttttttataatggaaaaggaaaatcaaGAGTAATTCacaatagattaaaaaacaaactgacagtACATAAACTGAAGTATATCAACAAGCAGACACCAGATTCATCTAATTAATCTCACTGTGTTCCCATCCCATTGTTTTATTCTCCTATTAGATTTTCACGGATGAATGAATCATCTGGTGACGTTTACACATTTAAGGGGCACTGAGCTTTTCTTGTATATCGTATATGATAAGAGCATGCTGAAGCTAAGATCAACACTACTTTCACAGTTTATACAGATTGGTTGCTAAGTGGGTCTGCTGACTCTCTCTAAACAGAAGAAATACTAATTTCCTTCCAACCTAGTAGGATTTTACTCCATTTCTGATCCAGGTCTTGAAGATGTCCTGTAGACATTGTTTACAGTTCTAACATCCAGCAGTACACGTAACCGAGCCCCTAAAAAGACACATAGTTTAATGTGttgtttggtttccattgataGACTAAAGTATTTcctttgaacaaaaaaaaggaaatgtggtTCTAGTTCCAGCATTGTGATAAAAACTGGACATTGTTCATGAAGTTTAGGAGGAAACAGAGGCAGAAACTGTCTCACTTTGACCATGCAATTAGTACCAGAGTGCAGAACAGTCCCACTGCAGCAAGGCTCCATAGTAAACAACAAAGAAAGGCATGATGGGATATAACAAGACATGAGAGACTAAGCATtgtcggggtgggggggtgactGGCCTTTCTTTTTCCATGCTAGCAGcgatttattaaattatgtttaactACCAGCGATAAGAGTCTGCAGCATATTGGATTTTAACATCTTTAAATGTCCAAGATGTTTTTATACTTTGATTAATTTTGACAAAGTTAGCTCCTATATATTGTCTTGTCACTGACTGTGTCATAAAAATCTTAATTTCTCCTTTATGTTTGAAGAGTACGCTGGAGCAGTAACAGTTTTTTAGGTTTATGTGAGGCCTGTGAGACCAAACCAAAGACCAGACACTGATTTAACCACACTGTGTACGTTTTAACAAATATTCTGATGTATATGCCCtcttattttatacattaacaAATGTAGCTAACAAAATAGGGAAAGTAAAAtataacatacagtatatatttattatagagAGTATAATATGCAATGTATTACGTTTTGTTCATGTGAAATATAATACACAGTTTACTGATGCAAGGCAATCTAGCCAGACACTGCTGCAACACACAATTGTCTGAATCTTCAATGTTGTGTAGtggtttgtgtaaaatgtagcATGTAGACTACAGccagtatgttttgttttttaacagtgcAGGTATACTGTACGTGatgaatatacaaatatatataattttgttttttaatgtttatggtggaaatgttttgtgtgcCTTACATATTGTGTAATCATGTCTAAAGTACAGTGatgatgtaatattttaatcagCATTGAGCATTGTGCCACTAAGGTTGTGTGGGAAATCTGACTGCCAATGTCTGGGGATGTGTGACCTAAAAAACTGCAGGTTGAATCTTTTGTATTAAAAAGTGCTAAATGATTGATGAAAATGTGTAGCACAGATCACAGCCTTTATGGCAACAATGGATGTATGTacaatttctgtgtgtgtgaaagttcTGATCTAAATGTTCTATCAGCAATATTAGAAATAAACCTAGGAATATTGTCTAATAATAAGAATGTATATAAACAgttatttgttcttttaaacttttttgtgTTGGCTGGAGTTGCTTTAAGTCTCCCCAGTGCATTTGCTTCACTATAAAGGAAATTCATTGGACAGGAGTCACTTTGCAACACACCTGAGAAGAGTTGTATTTTTACACAGGAGGGGTAAAAAGCTATTTATATTCAGTCATTAAGCACTGGGATTTGAGGTGCTCAACATCAGCACATATCTTAACAAGCAAACCTGTTCTGTGTTGTCTAATTATATTGTCTGAATCACTCACATTATTTAACCAGG

Function

symbol description
sh3bgrl2 Predicted to enable SH3 domain binding activity. Predicted to be located in nucleus. Is expressed in several structures, including intestine; mouth; notochord; otic vesicle; and sensory system. Orthologous to human SH3BGRL2 (SH3 domain binding glutamate rich protein like 2).

NR:

description
PREDICTED: SH3 domain-binding glutamic acid-rich-like protein 2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0017124 SH3 domain binding molecular_function

KEGG:

id description
K23740 SH3BGR; SH3 domain-binding glutamic acid-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003886 True 3240 mRNA 0.37 4 23342244 23359840

Neighbor

gene id symbol gene type direction distance location
AMCG00003887 NA coding downstream 8685 23322329 ~ 23333559 (-)
AMCG00003888 rps12 coding downstream 23100 23316206 ~ 23319144 (-)
AMCG00003880 tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734 coding downstream 252648 23082938 ~ 23089596 (-)
AMCG00003875 NA coding downstream 541015 22790248 ~ 22801229 (-)
AMCG00003870 pde7b coding downstream 784357 22535586 ~ 22557887 (-)
AMCG00003895 NA coding upstream 282964 23642804 ~ 23653555 (-)
AMCG00003900 tulp4 coding upstream 400762 23760602 ~ 23786763 (-)
AMCG00003899 NA coding upstream 463937 23823777 ~ 23845018 (-)
AMCG00003901 NA coding upstream 487181 23847021 ~ 23852940 (-)
AMCG00003906 NA coding upstream 687314 24047154 ~ 24075283 (-)
G4039 NA non-coding downstream 226559 23045315 ~ 23115685 (-)
G4000 NA non-coding downstream 485839 22856026 ~ 22856405 (-)
G3984 NA non-coding downstream 570460 22771572 ~ 22771784 (-)
G3898 NA non-coding downstream 982148 22359785 ~ 22360096 (-)
G3885 NA non-coding downstream 1117151 22224855 ~ 22225093 (-)
G4101 NA non-coding upstream 40021 23399861 ~ 23423473 (-)
G4130 NA non-coding upstream 194436 23554276 ~ 23554524 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding upstream 460850 23820690 ~ 23822698 (-)
G4222 NA non-coding upstream 683828 24043668 ~ 24046142 (-)
G4255 NA non-coding upstream 765011 24124851 ~ 24125052 (-)
G3523 NA other downstream 3835491 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 3916878 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 3969019 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 5189863 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 5199563 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 169679 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 380745 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 904067 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 2538094 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 2605580 25965420 ~ 25998628 (-)

Expression


Co-expression Network