AMCG00003887


Basic Information

Item Value
gene id AMCG00003887
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23322329 ~ 23333559 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003887
ATTTGTTTGCGTTTCTAAACCCTGTTATATAGTGTCTCCAGCCTAGGTGAATAGATGTCTGTCCTCTGAATGACCAGGTATCTAGGAAGGAGCTGCAACTCTTCGTCTGCTttggaaaaacatgaatacagtaGCAATGTGTGAGGAATACGCTCCTTATATCCACACCAGCAAGGAAGCGGGcttgcatacaaatatatacgTCAGGCTGCAtgcatgaagaaaaacaacaacaaaaccctAACACCTTTGCATGTGTGGGAGCCTATAGTGTGTGTATTACATTCACACCGAgagattattattaagtatttaatacattcaCCACACTCATGTTTTTATAGTCCAGGTttgctgctccaccaatgggatctgcgcgattctgcagatctgcgcaaacAGCGTGGCGAGACCCTCCCCTCCCGGCCTCCGTCCTCCGTCCTCCGTCCTCCGTCCTCCTCAGAGCTGGTATTGCAAGACGTTGAGTCAACAGGCAGTGAGTCCTTTCCCCCCTCAGTAACGCACATTATTAACCCCAGTGCAGAGCCTGTGTGCCGGCAGCCCGCTGCAGCGCAGGTCCACAAACGAGCTCCGACATGGACGACACCGACCCGGAGGCAGACGGGGATGAACACCGTGGAGATCATGTAGCAGACGCATCTGCAGGTCGGACGCAAAGGATTTCAAAGAATCAGATTTTGACCCTTATATCAATGGCATCTGTCAATTTTAGTGCAATGATTTGCTATTCAATTTTAGGACCATTTTTCCCTAACGAGGCAGTGAAGAAAGGGGTTAGTGAATCTGTAATTGGACTGATATTTGGATGCTACGCCTTGGTCAATTTATTGGGATCTTTAATTCTGGGGAAATACatTGTTCAGATTGGGGCAAAATTCATGATGATTTCAGGCCTTTTTGTATCAGGAGGTTGTACTATTCTCTTTGGCCTGCTTGACAAAGTGCCAGGAACAACAAATTTCATAGTGCTGTGCTTTATCATAAGGTCTATAGATGCTATAGGCTTTGCTGCTGCAATGACATCTTCTTTTGCAATtattgcaaatatttttcctAACAATATAGCGACTGTTATGGGTAGTTTGGAAATTTTCACAGGACTTGGATTGGTGTTGGGGCCTCCAATGGGAGGCTTTCTATATCAGTCCTTCGGCTATAAGATACCCTTTGTGACTCTGGGGTGTCTTCTCCTTTTGATGGTACCGTTTAACATGCTTGTGTTACCAAGCGTtgagGCTTTTCCCACAAATGATTCTTTCTGGAGACTTTTCACTCATCCCAAAGTTGTTCTGATCTGCTTCATTATATTTTCTATCAGTTCTGGTTTGGGTTTTCTAGATCCAACCATGTCGCTCTTCGTTTTGGAAAAGtttaatttgccTGCTGGATATGTGGGACTTGTGTTCCTTGGTTTGGCAATATCATACTCACTCTCGTCACCATTACTTGGAATTGTTAGTGATAAAATGCCTACTATTAGAAAATGGCTTTTGGTTCTGGGGGGCTTTGGAACAGCCATTGGCTTTTTTTTACTGGGTCCTGCTCCAATTCTTCAGATTaagagcGAGCTGTGGTTGTTCGTCTTGATGCTGGGCCTCATTGGGTTTTCCTTGGGCATGAGTGGCATCCCAACATTCCCAGAGATCCTCTCGTGTGCTATCGAACGTGGATTTGAGGAAGGCCTGAGCACCTTAGGACTGGTTTCTGGATTATTTGGAGCAGTATGGTCCGCTGGGATGTTCTTTGGTCCAACGCTTGGGGGCTACACAGTTCAGAAACTAAATTTTCCGTGGGCCTCAGTCATTCAAGGAGGAATAGCTTTGCTTGCTACCCTCTTAATGGGCCTCTATTTCATCATTGAGGGAGTGCAGAAAAAGAGATCTCCTCAAGTAGCTGAGAATGAATCTAACAGTGAAAGAACTCTGCTCCTGAACCAGAGTTAATCTGAGCCGCACTGAAGAATTACTGAAGGACCGTAACTAACTCACTGAATGTGGAGACTCtagattatatttgtaataatgaagGCAAGAAAGatctttattaatttttaattgttttgctaaGATGCACTgctaattgtatttaatatacagtgagggaaaaagctCAAAAAAATGATAAGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003887 True 2149 mRNA 0.44 14 23322329 23333559

Neighbor

gene id symbol gene type direction distance location
AMCG00003888 rps12 coding downstream 3185 23316206 ~ 23319144 (-)
AMCG00003880 tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734 coding downstream 232733 23082938 ~ 23089596 (-)
AMCG00003875 NA coding downstream 521100 22790248 ~ 22801229 (-)
AMCG00003870 pde7b coding downstream 764442 22535586 ~ 22557887 (-)
AMCG00003869 NA coding downstream 790505 22515779 ~ 22531824 (-)
AMCG00003886 sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 coding upstream 8685 23342244 ~ 23359840 (-)
AMCG00003895 NA coding upstream 309245 23642804 ~ 23653555 (-)
AMCG00003900 tulp4 coding upstream 427043 23760602 ~ 23786763 (-)
AMCG00003899 NA coding upstream 490218 23823777 ~ 23845018 (-)
AMCG00003901 NA coding upstream 513462 23847021 ~ 23852940 (-)
G4039 NA non-coding downstream 206644 23045315 ~ 23115685 (-)
G4000 NA non-coding downstream 465924 22856026 ~ 22856405 (-)
G3984 NA non-coding downstream 550545 22771572 ~ 22771784 (-)
G3898 NA non-coding downstream 962233 22359785 ~ 22360096 (-)
G3885 NA non-coding downstream 1097236 22224855 ~ 22225093 (-)
G4101 NA non-coding upstream 66302 23399861 ~ 23423473 (-)
G4130 NA non-coding upstream 220717 23554276 ~ 23554524 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding upstream 487131 23820690 ~ 23822698 (-)
G4222 NA non-coding upstream 710109 24043668 ~ 24046142 (-)
G4255 NA non-coding upstream 791292 24124851 ~ 24125052 (-)
G3523 NA other downstream 3815576 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 3896963 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 3949104 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 5169948 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 5179648 18135379 ~ 18142681 (-)
AMCG00003893 NA other upstream 195960 23529519 ~ 23533882 (-)
AMCG00003896 tmem181 other upstream 407026 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 930348 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 2564375 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 2631861 25965420 ~ 25998628 (-)

Expression


Co-expression Network