Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00003888 |
| gene name | rps12 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 23316206 ~ 23319144 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| rps12 | Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS12 (ribosomal protein S12). |
| description |
|---|
| PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S12 |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02951 | RP-S12e, RPS12; small subunit ribosomal protein S12e |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00003888 | True | 999 | mRNA | 0.48 | 6 | 23316206 | 23319144 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00003880 | tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734 | coding | downstream | 226610 | 23082938 ~ 23089596 (-) |
| AMCG00003875 | NA | coding | downstream | 514977 | 22790248 ~ 22801229 (-) |
| AMCG00003870 | pde7b | coding | downstream | 758319 | 22535586 ~ 22557887 (-) |
| AMCG00003869 | NA | coding | downstream | 784382 | 22515779 ~ 22531824 (-) |
| AMCG00003868 | NA | coding | downstream | 807689 | 22493463 ~ 22508517 (-) |
| AMCG00003887 | NA | coding | upstream | 3185 | 23322329 ~ 23333559 (-) |
| AMCG00003886 | sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 | coding | upstream | 23100 | 23342244 ~ 23359840 (-) |
| AMCG00003895 | NA | coding | upstream | 323660 | 23642804 ~ 23653555 (-) |
| AMCG00003900 | tulp4 | coding | upstream | 441458 | 23760602 ~ 23786763 (-) |
| AMCG00003899 | NA | coding | upstream | 504633 | 23823777 ~ 23845018 (-) |
| G4039 | NA | non-coding | downstream | 200521 | 23045315 ~ 23115685 (-) |
| G4000 | NA | non-coding | downstream | 459801 | 22856026 ~ 22856405 (-) |
| G3984 | NA | non-coding | downstream | 544422 | 22771572 ~ 22771784 (-) |
| G3898 | NA | non-coding | downstream | 956110 | 22359785 ~ 22360096 (-) |
| G3885 | NA | non-coding | downstream | 1091113 | 22224855 ~ 22225093 (-) |
| G4101 | NA | non-coding | upstream | 80717 | 23399861 ~ 23423473 (-) |
| G4130 | NA | non-coding | upstream | 235132 | 23554276 ~ 23554524 (-) |
| G4174 | gtf2h5,tf2h5,LOC107659223,LOC107721375 | non-coding | upstream | 501546 | 23820690 ~ 23822698 (-) |
| G4222 | NA | non-coding | upstream | 724524 | 24043668 ~ 24046142 (-) |
| G4255 | NA | non-coding | upstream | 805707 | 24124851 ~ 24125052 (-) |
| G3523 | NA | other | downstream | 3809453 | 19444016 ~ 19506753 (-) |
| G3517 | LOC101154678 | other | downstream | 3890840 | 19424963 ~ 19425366 (-) |
| AMCG00003825 | NA | other | downstream | 3942981 | 19361818 ~ 19373225 (-) |
| AMCG00003782 | ctsb | other | downstream | 5163825 | 18146660 ~ 18152381 (-) |
| AMCG00003784 | NA | other | downstream | 5173525 | 18135379 ~ 18142681 (-) |
| AMCG00003893 | NA | other | upstream | 210375 | 23529519 ~ 23533882 (-) |
| AMCG00003896 | tmem181 | other | upstream | 421441 | 23740585 ~ 23757796 (-) |
| AMCG00003909 | NA | other | upstream | 944763 | 24263907 ~ 24296246 (-) |
| G4521 | fig4 | other | upstream | 2578790 | 25897934 ~ 25901612 (-) |
| AMCG00003946 | NA | other | upstream | 2646276 | 25965420 ~ 25998628 (-) |
