AMCG00003893


Basic Information

Item Value
gene id AMCG00003893
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23529519 ~ 23533882 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003893
ATGGCGGGGAGTCCGGCTCGGGTGTTTGCAGCCCTGCTACCGGCTGGCGATGTCTGCCGAAATGAAAACGAGCCGGCAGCGGGCTGGGTAGCTCGGCGGCCcgctcagcagcagcagcagcccggCCGGGAGGTCCAGGTCAGCGGGAATGCCGAGCTCTCCGCTCCCCCGGACAGAGCCCGCCTGTCGGCGCGGGTGGGCAGCAGGAAGGAGTCGGTGGCCGAAGCCAAGAGCAGCGTCTCCCGGCGGCTGGAGTACATCCTGCAGAGCACCCGGCTGCAGGGGGTGAAGGAGGAGCATGTTACTGTGACCAGGGATATCCGAAGAGTCGAAAATGCGTACTATATGGAAGCAGAAGTCTGCGTTATATTTACGGACTTTGTGAAGATGCAGAACGTTAGCAATTTACTGGTGGAGAAACTTGACAGCTCAGTGACCGTCGGCACCCCAGAGTTTTATCACACCTCTGAGTGCCTCCAAAGACTGAGGCGGCAGGCGTGTCTGGCGGCAGTGGCGAACGCGCGGCACAAAGCCAGGGAGGTGTGCCAGGTGGTGGGGCAGGCCTTGGGGAGACCTCTGCTTATAAAGGAAGAGGAGACCAAGGAATGGCGGGGGCAGAACGAGGATGCGCCCGATCCAGAGACGCACACTTTGCAGCAGAGGATCGACAACGCAACGTTCTTTGTAACCTCTGTGGTGTTTGTCTCATTTGAAATCaaggcaaaagaaaaaggaaagaaaaaaacttga
>TU5013
GGGGCGGCTCATCGGCGCCGTTACTGCGGACCCGGGCTGCGGCGGGAATGGCGGGGAGTCCGGCTCGGGTGTTTGCAGCCCTGCTACCGGCTGGCGATGTCTGCCGAAATGAAAACGAGCCGGCAGCGGGCTGGGTAGCTCGGCGGCCcgctcagcagcagcagcagcccggCCGGGAGGTCCAGGTCAGCGGGAATGCCGAGCTCTCCGCTCCCCCGGACAGAGCCCGCCTGTCGGCGCGGGTGGGCAGCAGGAAGGAGTCGGTGGCCGAAGCCAAGAGCAGCGTCTCCCGGCGGCTGGAGTACATCCTGCAGAGCACCCGGCTGCAGGGGGTGAAGGTCGGCAGCTTGTGTCTGAGTCGTAGCTTTGAAATCCGGGATGAATCGCATTTGGAAAAGTCCGAGACACGCATTGCTACTCGCTCTTGTACTGATTGCCAGTGAGCTGCAGTGGACAGTGCAGTGAGCTGGCGCCTGCATGCAGGCTGTGTTGCACATGTGAAGTTGTACATTGCATGCCAAACATCTGTCTTTCCATATATACGTTATGTTCCTTTTTTGTTATCCGGTGTAATTGACTGTGCATTGCTGTTTTATCACTTTGCTTCCAACTTTGGACTATGCACTGCTCAGGAAGTCGGTGAAAGTTTCAAATCCCACATTTCTATAATCCTGTGTTGTGCGTGTTGTGTTCGCAGGAGGAGCATGTTACTGTGACCAGGGATATCCGAAGAGTCGAAAATGCGTACTATATGGAAGCAGAAGTCTGCGTTATATTTACGGACTTTGTGAAGATGCAGAACGTTAGCAATTTACTGGTGGAGAAACTTGACAGCTCAGTGACCGTCGGCACCCCAGAGTTTTATCACACCTCTGAGTGCCTCCAAAGACTGAGGCGGCAGGCGTGTCTGGCGGCAGTGGCGAACGCGCGGCACAAAGCCAGGGAGGTGTGCCAGGTGGTGGGGCAGGCCTTGGGGAGACCTCTGCTTATAAAGGAAGAGGAGACCAAGGAATGGCGGGGGCAGAACGAGGATGCGCCCGATCCAGAGACGCACACTTTGCAGCAGAGGATCGACAACGCAACGTTCTTTGTAACCTCTGTGGTGTTTGTCTCATTTGAAATCaaggcaaaagaaaaaggaaagaaaaaaacttgatatttatgtttaaagattttttatataataatgtgtgtgtgtatataatttaaagatcggttacaaatgtatatagtaaaaaaatacatatttttataaatccGAAATGTACCTGAGGAATTAAATATGTTGCAGTCCCTTTACATTGTTGTCCTCTACAAATCTGTAACATTTTGGTTGGGAGACAGCAGTGCAAGTGGTTTAAAGACCACTTTATAAATCACTTACActcatataattacaatgccACTATGCATACACTGTCCAGGGCTGAGGGCTGCCTTTACGAAGGCAGATGTGCAAAGTTCAAACAGTATAACGCACCAGGGAATAAAGGTAgatcagatgtgtgtgtttggttgggGAGCTTTCAACAGAAGGTAGAAGCATAGCCACCTCTTCTAAATGCAGCTCTTAACATTGTAATGTCTCCTTTAGTTGCTCTGACATCATAATAGCTGAAATAAAGGGAATTGAAAGCCCCTGGGCAAAAGGCAGAGATGTAAACCTccaaaataaagcataaatggTTTGTGTTGTCAGTTATCGAAATATTGGGATTATGAAGTGGAGAAAGTATaacattcattctcctgtaaagCAGTAAACTAGTTTTCCCACAATTCACATATGAGTTGGGGGGAGGGGAAGTCTGAGAAGCAGGCACATCTTGGCTGGGGCCTTTTCATCAGTCATCAGGGAAGACTTCCTTCAGCCAGGACTTCATAATGAATTGTTCACCATCAAAATGACTAAAATAATGGTCCAGCGTGGGGAT
>TU5014
GGGGCGGCTCATCGGCGCCGTTACTGCGGACCCGGGCTGCGGCGGGAATGGCGGGGAGTCCGGCTCGGGTGTTTGCAGCCCTGCTACCGGCTGGCGATGTCTGCCGAAATGAAAACGAGCCGGCAGCGGGCTGGGTAGCTCGGCGGCCcgctcagcagcagcagcagcccggCCGGGAGGTCCAGGTCAGCGGGAATGCCGAGCTCTCCGCTCCCCCGGACAGAGCCCGCCTGTCGGCGCGGGTGGGCAGCAGGAAGGAGTCGGTGGCCGAAGCCAAGAGCAGCGTCTCCCGGCGGCTGGAGTACATCCTGCAGAGCACCCGGCTGCAGGGGGTGAAGGTCGGCAGCTTGTGTCTGAGTCGTAGCTTTGAAATCCGGGATGAATCGCATTTGGAAAAGTCCGAGACACGCATTGCTACTCGCTCTTGTACTGATTGCCAGTGAGCTGCAGTGGACAGTGCAGTGAGCTGGCGCCTGCATGCAGGCTGTGTTGCACATGTGAAGTTGTACATTGCATGCCAAACATCTGTCTTTCCATATATACGTTATGTTCCTTTTTTGTTATCCGGTGTAATTGACTGTGCATTGCTGTTTTATCACTTTGCTTCCAACTTTGGACTATGCACTGCTCAGGAAGTCGGTGAAAGTTTCAAATCCCACATTTCTATAATCCTGTGTTGTGCGTGTTGTGTTCGCAGGAGGAGCATGTTACTGTGACCAGGGATATCCGAAGAGTCGAAAATGCGTACTATATGGAAGCAGAAGtaacttttttaaaattatgatttaatgtaCTGCACTAATTTAAGTAATCTATGAAAAGGGGGGGGCAATCCTGACATGCACAGTGATAGTTGGAGCTCCAACCAGTACCGCACCAATCCTGATcaactccccttcatctcctccctcctctctggctgtttcccctgtGCACTTaaatcccactgctcaagaaccCTACCcttatacattatacatgttGTTAAGGGTTCAGAGTAGTTTTAAGAAGCCAGAAACCATAATCGAGTGAAGATTGTACAAGCTATGCTAACAGCACATGAACCTgtttcagatttccttagcATAGTTCTTTAGGTAAATTAGTGATTGACCTTTAGCACAGACACCTATAGAAAcactttattgttttatagtCCACCTCTGCTGTTCACCTAAATACTGAAAAGCACCAAAGGCTTAACTTTGGAAATCCAATGCATCACTAAACTCTCTCCTTTTTTTCATTGTGGAAATCTGTATTAGTTCATGTAACAAGATAGCCCAGTTTCACTTAATTAGTACATGAATAACAATCTTCTGCcatgtatagttttattttaaaaagtgtttgcaGAAGTACAGTAAAATTGCTTTATTAATACAAGGGCACCAGAACATTACAATTCCATGTGTgggtatataaataataaaacaaataaaatctttgATCAGTCATcacttatttataattacttgtaaaaacatttttcaatttgtatagTTTTGTCTGTGAATGGATGTCTTTTGTTTCAGAATGCCTCTTTATAGTGAGTACAATCTAAAAGtactttaaagtttaaattattgtaGGAAATGTATCAGATCAAGCAGATTAGATTAAAAgcataatctttttttatgcCTTCCAAAAGAAACAGTTTGAAATTGACATCCTTTATGAAAAAAGATTGTAATAACACACAATACTGGATGTAGTGCATATAGTATAGTTGTTGTTGAAAGTATTCACTCTTTGTGAAAGTGTCACTTACTGCTGACCACTGTAAATACTGCTCTATGTATCTCGTTCTTACTATactgaatcagtgttcagcaGAGTCTGAACAGAtataattgatcaatcaccACACTTATTAAGCTAAAGGGAAACCTAATATCACAGCTTGAAATGTAGGGTGTAAATACATTCAATGACACTTTGTAATctgaaagtgttgttttttaccTTTTGAACTTGATTTcagcattatttaaacaattaaaaaaaaaaaaaaactttttaaataggACATAACCCTCATGCaaattttaaatttcatttgCAGGTCTGCGTTATATTTACGGACTTTGTGAAGATGCAGAACGTTAGCAATTTACTGGTGGAGAAACTTGACAGCTCAGTGACCGTCGGCACCCCAGAGTTTTATCACACCTCTGAGTGCCTCCAAAGACTGAGGCGGCAGGCGTGTCTGGCGGCAGTGGCGAACGCGCGGCACAAAGCCAGGGAGGTGTGCCAGGTGGTGGGGCAGGCCTTGGGGAGACCTCTGCTTATAAAGGAAGAGGAGACCAAGGAATGGCGGGGGCAGAACGAGGATGCGCCCGATCCAGAGACGCACACTTTGCAGCAGAGGATCGACAACGCAACGTTCTTTGTAACCTCTGTGGTGTTTGTCTCATTTGAAATCaaggcaaaagaaaaaggaaagaaaaaaacttgatatttatgtttaaagattttttatataataatgtgtgtgtgtatataatttaaagatcggttacaaatgtatatagtaaaaaaatacatatttttataaatccGAAATGTACCTGAGGAATTAAATATGTTGCAGTCCCTTTACATTGTTGTCCTCTACAAATCTGTAACATTTTGGTTGGGAGACAGCAGTGCAAGTGGTTTAAAGACCACTTTATAAATCACTTACActcatataattacaatgccACTATGCATACACTGTCCAGGGCTGAGGGCTGCCTTTACGAAGGCAGATGTGCAAAGTTCAAACAGTATAACGCACCAGGGAATAAAGGTAgatcagatgtgtgtgtttggttgggGAGCTTTCAACAGAAGGTAGAAGCATAGCCACCTCTTCTAAATGCAGCTCTTAACATTGTAATGTCTCCTTTAGTTGCTCTGACATCATAATAGCTGAAATAAAGGGAATTGAAAGCCCCTGGGCAAAAGGCAGAGATGTAAACCTccaaaataaagcataaatggTTTGTGTTGTCAGTTATCGAAATATTGGGATTATGAAGTGGAGAAAGTATaacattcattctcctgtaaagCAGTAAACTAGTTTTCCCACAATTCACATATGAGTTGGGGGGAGGGGAAGTCTGAGAAGCAGGCACATCTTGGCTGGGGCCTTTTCATCAGTCATCAGGGAAGACTTCCTTCAGCCAGGACTTCATAATGAATTGTTCACCATCAAAATGACTAAAATAATGGTCCAGCGTGGGGAT
>TU5015
GGGGCGGCTCATCGGCGCCGTTACTGCGGACCCGGGCTGCGGCGGGAATGGCGGGGAGTCCGGCTCGGGTGTTTGCAGCCCTGCTACCGGCTGGCGATGTCTGCCGAAATGAAAACGAGCCGGCAGCGGGCTGGGTAGCTCGGCGGCCcgctcagcagcagcagcagcccggCCGGGAGGTCCAGGTCAGCGGGAATGCCGAGCTCTCCGCTCCCCCGGACAGAGCCCGCCTGTCGGCGCGGGTGGGCAGCAGGAAGGAGTCGGTGGCCGAAGCCAAGAGCAGCGTCTCCCGGCGGCTGGAGTACATCCTGCAGAGCACCCGGCTGCAGGGGGTGAAGGTCGGCAGCTTGTGTCTGAGTCGTAGCTTTGAAATCCGGGATGAATCGCATTTGGAAAAGTCCGAGACACGCATTGCTACTCGCTCTTGTACTGATTGCCAGTGAGCTGCAGTGGACAGTGCAGTGAGCTGGCGCCTGCATGCAGGCTGTGTTGCACATGTGAAGTTGTACATTGCATGCCAAACATCTGTCTTTCCATATATACGTTATGTTCCTTTTTTGTTATCCGGTGTAATTGACTGTGCATTGCTGTTTTATCACTTTGCTTCCAACTTTGGACTATGCACTGCTCAGGAAGTCGGTGAAAGTTTCAAATCCCACATTTCTATAATCCTGTGTTGTGCGTGTTGTGTTCGCAGGAGGAGCATGTTACTGTGACCAGGGATATCCGAAGAGTCGAAAATGCGTACTATATGGAAGCAGAAGTCTGCGTTATATTTACGGACTTTGTGAAGATGCAGAACGTTAGCAATTTACTGGTGGAGAAACTTGACAGCTCAGTGACCGTCGGCACCCCAGAGTTTTATCACACCTCTGAGTGCCTCCAAAGACTGAGGTAAGACTGACAGATCGACTGTGCATCTTTGTTAGTCTTAAATGACAGAATTATTATGTCTGTGTTTGGCGGGGGGGGGAGAACAATCTTGAATTCAAAactcaattacattttagtaaagctcagttttattaaaaagtgCCAAACGTACAAGCACTGGAGACAAAAGCTTGGAAACGACCACataacaatcaatcaatcatacTAACTCTAAATAGCATGGATCGGctgtcataaaataaaaaaagaaaatcaaaacctttttcttttgcagatgcttttgttttattagtctgttaattgaaaatgctgcaaatcagaaatgtgaaaaaagtgcTTGTGTTTTTCCTAAGCTGCAAAGGTTTGTTAGCATGTCTACACTGAATTTTTCATGAAAAGCAGCTGTGAAGACCTGTAAAATCAAGAAACAGCATGACTTCTCTTAGCTGGGGGCCTGCAGGGTGCACTCACACAGTGatcaacattatttatttggtgaGCATTAGTCTGCCAAACTTATCTTTTTATATCCAAGAGTGAAGGGGTGGCACGGGGGCAGAGGAACTATGTCACCTTTTACAGTGCAAGGCAAATGCTCCACATTGGAATGACATCAGTTGCATTTTCCAAGACCATTTTACCCCCTGCCTCATATCAGTTTATTCTTCACATTTAGCAAAAGATCAGGGATCTCACGACTGTTAGATTGAGATGTTGAACCTTGTCATGCCAAGATGTGTAACTAACAGAGGGGTCTTAAAAATGATGGAATTGTAAGCCCCCCCAAAAACTCAGATTCTCTTTGGTTGTTAAGCCATATCCTAAAAAGCATTCTTGTTTGTTGATCTAGAACAGGTGCTGCAATAATTTTGTCCATCACTCATTGGCATTCACACTCCCTGGTGTTGGGCAGGGCCAGTCAACTGCAGGTGATATCCACAGTCCTGCCGAAGTGCCCCTCCCCCTTGGTTGTGCTGTGTGAACCCAGTCAGAGATCAGCTTTGCTGGAGCTCCATTCCTCTGTGATTCAGTAGCTCAGAAATGTCCTCTGGTTAGGTGTTACAGGGTCACAAAATGGTGATGAAAGGGGAGAACTCCTCTTCATTCATTCTCTTTTCCCCTCAGGCGGCAGGCGTGTCTGGCGGCAGTGGCGAACGCGCGGCACAAAGCCAGGGAGGTGTGCCAGGTGGTGGGGCAGGCCTTGGGGAGACCTCTGCTTATAAAGGAAGAGGAGACCAAGGAATGGCGGGGGCAGAACGAGGATGCGCCCGATCCAGAGACGCACACTTTGCAGCAGAGGATCGACAACGCAACGTTCTTTGTAACCTCTGTGGTGTTTGTCTCATTTGAAATCaaggcaaaagaaaaaggaaagaaaaaaacttgatatttatgtttaaagattttttatataataatgtgtgtgtgtatataatttaaagatcggttacaaatgtatatagtaaaaaaatacatatttttataaatccGAAATGTACCTGAGGAATTAAATATGTTGCAGTCCCTTTACATTGTTGTCCTCTACAAATCTGTAACATTTTGGTTGGGAGACAGCAGTGCAAGTGGTTTAAAGACCACTTTATAAATCACTTACActcatataattacaatgccACTATGCATACACTGTCCAGGGCTGAGGGCTGCCTTTACGAAGGCAGATGTGCAAAGTTCAAACAGTATAACGCACCAGGGAATAAAGGTAgatcagatgtgtgtgtttggttgggGAGCTTTCAACAGAAGGTAGAAGCATAGCCACCTCTTCTAAATGCAGCTCTTAACATTGTAATGTCTCCTTTAGTTGCTCTGACATCATAATAGCTGAAATAAAGGGAATTGAAAGCCCCTGGGCAAAAGGCAGAGATGTAAACCTccaaaataaagcataaatggTTTGTGTTGTCAGTTATCGAAATATTGGGATTATGAAGTGGAGAAAGTATaacattcattctcctgtaaagCAGTAAACTAGTTTTCCCACAATTCACATATGAGTTGGGGGGAGGGGAAGTCTGAGAAGCAGGCACATCTTGGCTGGGGCCTTTTCATCAGTCATCAGGGAAGACTTCCTTCAGCCAGGACTTCATAATGAATTGTTCACCATCAAAATGACTAAAATAATGGTCCAGCGTGGGGAT

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003893 False 750 mRNA 0.59 4 23530297 23533835
TU5013 False 1934 TUCP 0.37 3 23529519 23533882
TU5014 True 3239 TUCP 0.37 2 23529519 23533882
TU5015 False 3059 TUCP 0.46 2 23529519 23533882

Neighbor

gene id symbol gene type direction distance location
AMCG00003886 sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 coding downstream 169679 23342244 ~ 23359840 (-)
AMCG00003887 NA coding downstream 195960 23322329 ~ 23333559 (-)
AMCG00003888 rps12 coding downstream 210375 23316206 ~ 23319144 (-)
AMCG00003880 tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734 coding downstream 439923 23082938 ~ 23089596 (-)
AMCG00003875 NA coding downstream 728290 22790248 ~ 22801229 (-)
AMCG00003895 NA coding upstream 108922 23642804 ~ 23653555 (-)
AMCG00003900 tulp4 coding upstream 226720 23760602 ~ 23786763 (-)
AMCG00003899 NA coding upstream 289895 23823777 ~ 23845018 (-)
AMCG00003901 NA coding upstream 313139 23847021 ~ 23852940 (-)
AMCG00003906 NA coding upstream 513272 24047154 ~ 24075283 (-)
G4101 NA non-coding downstream 106046 23399861 ~ 23423473 (-)
G4039 NA non-coding downstream 413834 23045315 ~ 23115685 (-)
G4000 NA non-coding downstream 673114 22856026 ~ 22856405 (-)
G3984 NA non-coding downstream 757735 22771572 ~ 22771784 (-)
G3898 NA non-coding downstream 1169423 22359785 ~ 22360096 (-)
G4130 NA non-coding upstream 20394 23554276 ~ 23554524 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding upstream 286808 23820690 ~ 23822698 (-)
G4222 NA non-coding upstream 509786 24043668 ~ 24046142 (-)
G4255 NA non-coding upstream 590969 24124851 ~ 24125052 (-)
G4256 NA non-coding upstream 594659 24128541 ~ 24129966 (-)
G3523 NA other downstream 4022766 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 4104153 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 4156294 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 5377138 18146660 ~ 18152381 (-)
AMCG00003784 NA other downstream 5386838 18135379 ~ 18142681 (-)
AMCG00003896 tmem181 other upstream 206703 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 730025 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 2364052 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 2431538 25965420 ~ 25998628 (-)
AMCG00003967 LOC107095448 other upstream 3296472 26830354 ~ 26869578 (-)

Expression


Co-expression Network