AMCG00003895


Basic Information

Item Value
gene id AMCG00003895
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23642804 ~ 23653555 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003895
CGGCCGTCTGCAAGTGCTGACAGATCAAGGCAACAGTTTTTCATAGTTGCGTCCCATCTTTTTTGCCCATACATTTCTTGCAACCCATGTCAGTCGTCAGCAGTCGTCAGGCAAGTGGGGTCTCCCGACAACACCAGTGAAGTACAAAAAGCGACAGTggatacttaaaaaaacaccaaagaaACTACTGGGTAACTTTTGTAAGTTGCCAGTGAGTTGCGCGTCTGCACTGGGATGGCGGAGAAGAGGCGCTCGCCGTGCACCATGAGTCTGAAGGCTCACGCGTTCTCGGTGGAGGCGCTCATCGGCGCGGAGAAGAAGCGGAAGCTGCGGGACAGCGAGGCTGGGCTCGAGGAGGTGCGTGCCGTCTCGAGCCCGGAGCAGCACCGGACGTGCGCGAGCGACGGGCCCCCTGAATGCGAGGACGAGCTCTCGGACAGTCCGCCGCCCGGCTCTGTGTCGGCGGCCCCTCTCGTCGCCTCCCCGCCCGGCTCGGCTGCTGCGGCTGCGGctgcggaggaggaggagacacGCGTGGATCTGCAGGGGTCGGATTTGTGGAAAAGATTTCATGAAATCGGAACAGAAATGATCATCACCAAAGCCGGAAGGCGGATGTTTCCCGCTATGCGTGTCAAGATCTCCGGCCTGGACCCTCACCAGCAGTACTACATCGCCATGGACATCATCCCGGTGGACAACAAACGGTACAGATACGTGTACCACAGCTCGAAGTGGATGGTGGCCGGTAATGCGGACTCTCCGGTGCCGCCGAGGGTGTACATCCACCCGGACTCGCCGGCCTCCGGAGAGACGTGGATGCGACAGGTCATTAGCTTCGACAAGCTGAAACTCACAAATAACGAGCTGGATGACCAGGGCCATATAATTCTTCACTCCATGCACAAATACCAACCAAGGGTGCATATCATTCGCAAAGAGTGCGGTGAAGATCTGTCACCAGTGAAATCTGTCCCAGTTGGAGAAGGGGTTAAGGCATTTTCCTTTCCTGAAACAGTTTTTACAACTGTAACAGCATACCAGAATCAACAGatcACAAGGCTAAAAATTGACAGAAACCCCTTTGCAAAAGGATTCCGTGACTCGGGTAGAAATAGAATGGGCTTGGAGGCGTTAGTGGAGTCCTATGCGTTCTGGAGACCATCGCTGAGGACCCTGACATTTGAAGATATCCCTGGAATTGCTAAGCAAGGCAGCCCGGGATCGCCGTCGATTCTTCAGGCGTCTGGAAACGGAGTTTCCtcggcacacacacacctcctgtcctcctctccttGCTCCTCACCGGCCTTTCACCTGGGAGCCAACAGCAGCCAGCTGTGCAGCCTCAGCCCTGCAGAGTACACGGCCTGCAGCCGCTCCGGACTGGCACTGAACCGCTACAGCAACACTCTGGCCGAGACCTACAGCCGGCTGGCCGGCCCCACCACCGACACTTTCACATCTCCTCGGACTCCCTCCTATGTGGGGGTGAGTGGTGCCAACGTGTCCATGGCGGGCACTGATGGGGATGCCTTCAGCTGCTCTCAGGCTGGCCTGCCATTACAGATCCCAGGCATGCCCTCTCCACAGCTCCAGTACATCATGCCAAGCCCACCAGGAAACGCCTTCTCGAGCAACCAGGGTCATCAGGGAACGTACAACGGCTTCAGGCTTCACAGCCCCTATGGCTTATACGGATATAACTTCTCCACGTCACCCAGACTGGCCACCAGCCCTGAGAAGATTGTCTCCTCTCAGGGCACTTTTCTTGGCTCCTCCCCCAGCGGGACCATGACTGACAGGCAGATGCTGTCTCCTGTGGAGGGTGTGCACATGCTCAGTGGTGGACAGCAGAGTGTTTTTGATTCCAGGACTTTGGGAAACCTAACAAGTTCATCTTCTCAAGTGCCAGCACACATGGTGTGAAGACATCTCCTTAGCATTCGAATGAACAGACTGTGGCATTTGATGTAGCGCTAACATAAGTAAATGTTAGATAATTAGCATTTTTGAATTTAAAAGGCTGTACGTATTTGCTTTGAGtttgcagagaaaacaaaaaggctgaCAAATCAAGGACCCCATCACCAGAACTAAATCTGTTAAAAATGTTCACTGCATACCGtgtaattcataattcatgaATTCCTCACAAGATGTAGGCTTAGTAGGGAATGGGTTTATGAAGAGCAGTACAGTGGTGACTATTTTTAGTGTAAACCTGAAGTGAAGAGCAGATGTAAATCAGATGTGGCGAGTAAATGCACAGTTGATAGGTATACTTCTTTTTGTAAAGacactttttaaagttatattgcTTTGCTGCTCATGGAGGAAAAAGTTCAGGTAGCACACAAATGAGACTAGACCTGCCAATCATAGAAGAGGGCAGTAGTCTCTTCTCATCAGGCTTTATTGTTGTTGTCCCAGTTAAGTACTGGATAAGATTTAAAtatgaagacatttttaaatggcactTGAAATTTATATGAACAAACCCCATTTTCATGGCTGATTCAAGCTGAGGTGTTAAATCACACATTCGATCTGTGATTTAATGAGGTaagataatattaatatacatttttacacagattATAACATTACACAACTCTCCACCCCTCTCCAGTATAGGACATGTTGGCAAGCTGTCCCACAGCTGTTGTGCTTAAAAGTTGCTGAAATAAGATCTCATTGACAGCAGTGCgataattcattaaaattagTAATGACCTAAAGTACAAATCAAGGGACTTGctttctatatttaatattaatttcgAAAAGGTCAACAGCAACTGCTAAAATACAAGGGTACATTATCCAGAGATTAGTCCAGATATTTCAACtcttaaatgtatgaatttcaTCATAATAACACACCAGACTCTTGAATAACAATTTGGGCCTTTGTTCTTCTCCATGTACAGACCCCGGTCTTAAAATCTGGGGaactttcagtttttaatattcATCTTCAGAATTTGGAATTGACAATATAGTATTTATGGTCAGGAATGCCACATCCctatttatacaaaacatgctgcagattgtttttcaaattagaaaactaaatatttgatTGAACTATTCAAAGCAGATGATCTGGATGCTTCTGCAGGATTGTCATGCTCTGTTTCTGGGCCCAAGCTGTGTCAGTGCAACTCCTTGCTTTAAGACTGAGCCTTGGAAACAGAGCACACTAACCCTCATACAGAAACGCAGACTGCAGGGCAGGAAGTGGGAAGATGGACAGGAAGGAAGGCATAGGATTTAATGTGATTAAACAAAGCAACTGGAGTTGTAGAGACTGCCATACATGTTTAGATTCTCAATGAAATGATAGCTTGGCTGCCAAAAGATTCcataatattaattacaatttgtTAATAGTTTTCCACTTCAAGGAGTGCAATTGATGCGTTTTGCTgttcttttttgtaatgtatatgaTTTCCTGTCATAGACCTAACCCTACAATTTGGTACCTTTCTCTTACCAGCTTTCTTGTTACGAATATTataagaatattattattaacatgataTTGTGagtttgtttgtcttgtttaaattatgtacattaatgtacagttttttttgtagtttcttTATGCTGTCTGTTTCAAGagtaaatactgaaatacatgtCACTGCAAAGTTTAACttgcaataaaatgtgtaaatatttgatttataaatggtg

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG:

id description
K10183 TBX18; T-box protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003895 True 3711 mRNA 0.46 8 23642804 23653555

Neighbor

gene id symbol gene type direction distance location
AMCG00003886 sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 coding downstream 282964 23342244 ~ 23359840 (-)
AMCG00003887 NA coding downstream 309245 23322329 ~ 23333559 (-)
AMCG00003888 rps12 coding downstream 323660 23316206 ~ 23319144 (-)
AMCG00003880 tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734 coding downstream 553208 23082938 ~ 23089596 (-)
AMCG00003875 NA coding downstream 841575 22790248 ~ 22801229 (-)
AMCG00003900 tulp4 coding upstream 107047 23760602 ~ 23786763 (-)
AMCG00003899 NA coding upstream 170222 23823777 ~ 23845018 (-)
AMCG00003901 NA coding upstream 193466 23847021 ~ 23852940 (-)
AMCG00003906 NA coding upstream 393599 24047154 ~ 24075283 (-)
AMCG00003904 NA coding upstream 429110 24082665 ~ 24097083 (-)
G4130 NA non-coding downstream 88280 23554276 ~ 23554524 (-)
G4101 NA non-coding downstream 219331 23399861 ~ 23423473 (-)
G4039 NA non-coding downstream 527119 23045315 ~ 23115685 (-)
G4000 NA non-coding downstream 786399 22856026 ~ 22856405 (-)
G3984 NA non-coding downstream 871020 22771572 ~ 22771784 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding upstream 167135 23820690 ~ 23822698 (-)
G4222 NA non-coding upstream 390113 24043668 ~ 24046142 (-)
G4255 NA non-coding upstream 471296 24124851 ~ 24125052 (-)
G4256 NA non-coding upstream 474986 24128541 ~ 24129966 (-)
G4353 NA non-coding upstream 981735 24635290 ~ 24635495 (-)
AMCG00003893 NA other downstream 108922 23529519 ~ 23533882 (-)
G3523 NA other downstream 4136051 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 4217438 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 4269579 19361818 ~ 19373225 (-)
AMCG00003782 ctsb other downstream 5490423 18146660 ~ 18152381 (-)
AMCG00003896 tmem181 other upstream 87030 23740585 ~ 23757796 (-)
AMCG00003909 NA other upstream 610352 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 2244379 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 2311865 25965420 ~ 25998628 (-)
AMCG00003967 LOC107095448 other upstream 3176799 26830354 ~ 26869578 (-)

Expression


Co-expression Network