AMCG00003898 (LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533)


Basic Information

Item Value
gene id AMCG00003898
gene name LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23710029 ~ 23726144 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003898
CCAGTGTGCCTGTGGACAGAGATCATTGACTGGGAGGCAGTCCCTACAGGGGAAGACGTATCTGGTGAAGCTCAGAGGGCTCTCTGCTCGTGGAGGAGCCGCTGTCCTGAGAGTCGCACAGTGATAGCAATGCCAGCAGCAGTCAATTCTGCCTTAGAGGGGACCATAGCAGAGCTGGGGGAGCTGGACAGAATCGCTCCAGAATGGGAGAGGCCCGGCAAGGACAGGCAGATTCCCGCATGCCTCAGCAAAGTCCCACAGGACATGGTGAAGACCTTCCCCCACACCAAGCGGGTCGGGAGTTACCTGGTGGGCAAAATGATCAACAAGGGATCCTTTGCCAAGGTGATGGAGGGACTCCATATCAGCACAGGCGAGAAGGTTGCCATCAAAGTGATTGACAAGAAGAAGGCCAAGCAGGATTCTTATGTGCTGAAGAACATGAAGCGGGAGCCGCGGATCCACCAGATGATCAAGCACCCGAATATCGTGCAGCTGTATGAAACGCTTGAGACCGAGAACTCCTATTACATGGTGATGGAGCTGTGTCTGGGGGGAGACCTCATGGACCGCATCTGTGATAAAAAGAGGCTGGATGAGAAAGAGGTTCGCAGATACACCAGGCAGATCATGTCAGCGGTGGAGCACCTTCACCGGCACAGCATCGTCCACAGAGATTTAAAGATTGAAAACTTTCTCCTGGATGAATATAACAACATCAAAATTGTTGACTTTGGTTTAAGCAACACACTGAAAGCAGAGTCCCTCTCACTGGAGCTCCTAAACACGCAGTGTGGCAGCCCTGCCTACGCTGCCCCTGAACTGCTGGCGCACAAGAAGTACGGGCCGAAGGTGGACGTGTGGTCAGTTGGCGTGAGCATGTTTGCTATGCTGACGGGTACATTGCCTTTCACTGTGGAGCCTTTTAATATCAAGCAGCTGCATCAGAAAATGGTCAACGGTGAAATCAGCACTATCCCGGCCGACATCAGCAAAGgCACCGTTCAGTTCATGTTGTCTTTGCTGGAGCCCAATCCCTCCAAGCGGCCAACTATAAAAGAAGCCATGGAAGAGAAATGGTTAAACGAAGGCTACATCAAGAGACCCCTCAACTCGGTTTTGTACAAAAACAGacCTCGCCCAGATGAGCTGAACTCAACAGTGTTAAACTACATGACAGAGTCTCTGGGTTATGGCCTTTCTGACATCATCAGCACTCTGATTAATAACCGTCCCTCTGCCATCATGGCTGCTTACTGTCTATTGGTGAAGAAACTCACAAGGCACCAAAAAGGAGTCAAAGCAATGAAGGAGACTGTTGTGGAGAAGAACATGAAGCAGACCAGTAAACCCCTCAGGATCCCCTTTCAGGAGAGTGAGTCCCATAGCAACAGAAAGAAGACAGAGGACATCCCAAGAGAAAATCTGAAGGACACTGAGAGGAATGTGTCATCCCATTCTCCGGCTCCTGCATCTGTTGATGGCATAACAGAAGATGAGATTGCCATTACACTGGAGAACAAGGAGAGACACTTTCCTGAAGAATTAATTCATCTGGCTCCCCCAAAGTGTTCTGATGAAGACTTATCGAGTCAGGACCAATGTGAATCACCTCCTTCTAGCACACAAGGGCTAAAAGACCAAAGCAGGGAAACAAATGTCAtcacaaaaacaccaaaactcCAGGAACGAAGAGCTACTGGCTCTGAAAACACTCCCACGGAGCCAATCAACTACTGCGTAGATGAAAAGATGGAGAAATTGCAGACGTTCTATTTGGAAAAAGGAGTCTCTCCCAGACTTTTGCTAGAAAACCGGGGACAAAGCAGGAGCCCAGTACCACATCAGGATACAAGGTTTAAAGACCTCCTCCATGCAATGGATCCAAAAGTCCCAGCACTTGCCTGGCGTTGTCCAGAAAAGGAGGGCCGTCATTTTACCACACTGGAGTCGACCCAGATGTCACCTTTGCCAAAGCTGCGTCACACCGCACTCAAAGACAATATCACCAGGAGAATCACATGGGTTGGGATGACAAGGCACGGAACCAGCATTTCCCCTCCTTTCCTGGTGAATGGTTCGAGGCCTCCTGTCTTTCACTCCTCACGTCAGCCAACCCTTATTATTAAAAGCTTACGCCAATCAAAAGAGAGGGGGCGCAATGCAATCAACACCACGGTGAAGAGGAACTCGGTACAGCTCAGACAATCACACCGCGTGGCAGACTTGAACCTGCCCATGCTCTCGCCTGCATTTCAGTCCAAGTCCGACAAGAAGCCCGAACTTCTGAGGATGGATTTTGGA
>TU5028
GCTGGGGGAGCTGGACAGAATCGCTCCAGAATGGGAGAGGCCCGGCAAGGACAGGCAGATTCCCGCATGCCTCAGCAAAGTCCCACAGGACATGGTGAAGACCTTCCCCCACACCAAGCGGGTCGGGAGTTACCTGGTGGGCAAAATGATCAACAAGGGATCCTTTGCCAAGGTGATGGAGGGACTCCATATCAGCACAGGCGAGAAGGTTGCCATCAAAGTGATTGACAAGAAGAAGGCCAAGCAGGATTCTTATGTGCTGAAGAACATGAAGCGGGAGCCGCGGATCCACCAGATGATCAAGCACCCGAATATCGTGCAGCTGTATGAAACGCTTGAGACCGAG

Function

NR:

description
PREDICTED: hormonally up-regulated neu tumor-associated kinase homolog A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003898 True 2304 mRNA 0.50 10 23710029 23726144
TU5028 False 346 TUCP 0.55 2 23710238 23713134

Neighbor

gene id symbol gene type direction distance location
AMCG00003890 NA coding upstream 189442 23459840 ~ 23520587 (+)
AMCG00003894 phip,LOC107708770 coding upstream 262610 23445822 ~ 23447419 (+)
AMCG00003892 NA coding upstream 286856 23410335 ~ 23423173 (+)
AMCG00003889 NA coding upstream 320720 23374293 ~ 23389309 (+)
AMCG00003885 eya4 coding upstream 396152 23237346 ~ 23313877 (+)
AMCG00003897 dynlt1,dylt1 coding downstream 9658 23735802 ~ 23740462 (+)
AMCG00003903 rmnd1 coding downstream 378075 24104219 ~ 24114576 (+)
AMCG00003917 NA coding downstream 555772 24281916 ~ 24282443 (+)
AMCG00003911 NA coding downstream 584464 24310608 ~ 24319648 (+)
AMCG00003913 NA coding downstream 640055 24366199 ~ 24423841 (+)
G4089 NA non-coding upstream 340033 23366191 ~ 23369996 (+)
G4071 NA non-coding upstream 347582 23362036 ~ 23362447 (+)
G4057 NA non-coding upstream 365024 23266270 ~ 23345005 (+)
G4162 NA non-coding downstream 41264 23767408 ~ 23767759 (+)
G4163 tulp4,LOC102289060,LOC104963868,LOC107597860,LOC102779174 non-coding downstream 47596 23773740 ~ 23774052 (+)
G4164 NA non-coding downstream 48496 23774640 ~ 23774943 (+)
G4165 NA non-coding downstream 54636 23780780 ~ 23781088 (+)
G4351 NA non-coding downstream 884130 24610274 ~ 24610562 (+)
AMCG00003891 NA other upstream 176154 23521826 ~ 23533875 (+)
AMCG00003884 NA other upstream 371788 23332601 ~ 23338241 (+)
AMCG00003874 NA other upstream 940802 22683016 ~ 22769227 (+)
G3799 med23 other upstream 1786242 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 1808164 21890523 ~ 21901865 (+)
AMCG00003902 NA other downstream 112445 23838589 ~ 24042885 (+)
AMCG00003910 zbtb2b other downstream 392240 24118384 ~ 24129892 (+)
G4360 NA other downstream 957256 24683400 ~ 24683920 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other downstream 2059029 25785173 ~ 25795795 (+)
AMCG00003948 sesn1,LOC102782344 other downstream 2355139 26081283 ~ 26085122 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_12676233_12688520 NA coding CI01000001 null 12676233 ~ 12688520 (-)