AMCG00003899


Basic Information

Item Value
gene id AMCG00003899
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23823777 ~ 23845018 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003899
GTGATGCTGTGTCGCTGGTAGACGTGACAGCCGTGTCAGGCTCGGAGGTTACTTTTCCTCTTTTTAATAGGCTCAGAAGATGTCTGTAGCAACACATTGCATCATTTGTTGTAGAAAAATCAGTACGTCTGGCCCTGGAGTGAAAAGGATTTTTCAGTGGAAATATATCCGGAAAATTGCTAAGTTGACTGGGGCTGTAATTGTAGGtGGCTGTGTTTTTATAACTTATGAAGTTGTTGCATTGAATAAAGCCGTAACCATTGACATGGAAGCTGTACTGCAAGAAAAGTTAAAGTCCTACATCTATCTGAATGCCACACCTTTCAAGGAACAGGAGACATTTGGCATCACATACAAGGCAAGGAAAGAACTGCACAGAGCAGCAATACGATTTCTGGAAACATCTACAAAACTCTTTAAGGGGCCTTTGGATGAACATCTGAGCAAGCTCGATGTGGAGCCCCATGAGTTCTCTCTGTGGCTGCTGCTGAAGAAAACGCGGTCAGCCGACAGAATTGAGCGACTGCAGGCAGTCAAGGAGCTGGCAGGCAACCCCCATTGGCAAGACTACCAGTACAGAAGTGCAGCCCAGGCCAGTGATCATCGCACAGCGATCGGGTTGGCAAGAACCAAAGATGTGGACCTGCGCTTCTTTCTGCTGCCGCCGCTGCTCCCTGAAATTGGTGATAGTTACTCAATAGAAGACAATCTGAGGCAGCTGTTGGCCTCTCTGCCTCAGCCGGAGGTGGATCAATGTGTCCAATACTTCACTTCCCTGGCCCTGAGGGAGAGCAGTCAGTCACTGGCAGCCCAAAGACTCTTACAGAGGGTGTACCAGCTCCGCAAAGACTCACAGAAAATCCAGAGGAACATCATCCAGATCATAGGAAATTTGGCCTTGAGAGAAAATGTGCACTCAGCCATTGTACAATCAGGTTGGGTCTCTGTGTTGGCGGGATTAATGAAGTCTACGCACATTATTCAGGCCTCTCAAGCAGCCAGAGCCTTGGCTAACCTGGATAGAGACTCGCTGCAGGAAAAATATGAGGATGGCTTATACGTTTTACACCCACAGTATCGCACCAACCAGCCAATAAAAGCAGACGTCCTGTTCATTCATGGTCTAATGGGAGCAGCTTTTAAGACATGGCGGCAGCAGGACTGTGATGCATCTCAAGATGGGGAAACCACTCATATAAAGGAGGACTACACTGAGTGCTGGCCAAAGACGTGGCTTGCGGCTGACTGTCCCAGCGTGAGGGTCCTGTCCGTGGAATACGATACCCATCTTAGCGACTGGAGAGCAACCTGTCCCGCTGAGAAACACAGAAAGTCCCTGGCATACAGGAGCCGTGAGCTTCTCAATAAGTTAAAGGCGGCTGGTGTGGGGGATAAACCAGTAGTTTGGGTGGCACACAGTATGGGAGgTTTACTGGTCAAGAAAATGCTCCTTGATGCCTCAAAGGACCCTGATATGGAATCCctgataaaaaatacacaagggATTATGTTTTATAGTGTTCCTCACCATGGGACACATATGGCTGAGTATTCAGTCAATGTCAGATATTTGCTTTTCCCATCTGTAGAAGTGAAGGAGCTCTGTAAAGATTCACCTGCACTTCATGAACTCAACGAGAATTTCCTAAACATGGCCAAGGAAAGGAAATTCAAGATACTGAGCTTTGCAGAAACACGGCCCACTACCATTGGCCCTATGGTGAAAATGCAGGTGGTTCCAGTACAGTCTGCAGATTTGGGGATCGGTGACTTTATTGAAGTGGACGTCGATCATCTAAATATCTGCAAACCCAAGAAAAAGGATTCCTTCCTTTACAGGCGTAGCTTAGAGTTTATCAGAGAATCCCTGGAAAAGCAAAtcagcagttaaaaaaaaactattttcctcTGAATCATGCAACACCCACAGCTGACatgaaactgtgtgtgtatatatataattattttaattttatttttttacattacaattatataaatgcaaattaaactcCTATAATGCTGATGTgagctgattaaaaaaaatacatctgaataAATAGTGAATAGATAGTGATGTGAAATACAATggatttatttaacacaaaatatcTTACCAAAATGTAAGCACTTAACTCTTCATAACAAAGATAAAGAAACCAAGGAAGCTGTATGGTTGCGGTGTATCACTGCATCGGTACAGAAGTTCAGAGTGATCACTTGCCTCCTTTCTGAAAAGCAAGGGTACAGACAACTGGCATCTGAACAAGAAAAGCACACCTGCTGTATACTTTCTATGTTGTTGTTCCCATTTGTAgatcaatttgtattcattttagtgGAATGTCTTTACGTGGAATTTGATTACTAATTTGTAATCTGACCCTCTTGTAAAAGTTACTATTTATGTATGATCTTGAATTCTTAATCACAAAAAGAATATCTATAATTATGGTCAGCCTCTGATTTATAAgtatcagattatttttattttcagaacgtttgttttaaattttaaactaGAACTATGCATTGGCAATGTATTTAAGGTGCATCATGGATGTCATTCATATCTGTTGATTTACTTTCACTGAGGAATTtagaaatgtacacatttactgctttttattttaagaattgtttcccccatttctttccttttgtttcaatCCTGGGTCCATAGAGTTCATATATGTCTTGTGATGTACATTACACtgaactgtaaacattttaacaaaagcaCATAATATTAAGTTGGAAGGAGACAACATGAAATATGGATACTTATTGCACAATATGAAAGCTTGTTTCCATCTGCAGTCGCCTCATTCCATTTTGGATTTGTgacttcatttaatttaatctgattgGTTTAAATAACTGTTAAACTAATGCAATTGACTTATCCTTTAACAGATTATCTTTAGGTCACTGCCCTACCtcatatatattatcatatGGAACCTTGGAgaagtaaatgtatgtaaaatttGTACAACATCTTAAAAGACATATGTTCATGTGTTTTAGCACTTCAATACCATTTTGAATGTTCTTCCAGCTTTGGAACTGTGTTTTCCCATTGTTTTAACTGCATTGTATAACTGCATTTTCAATGCaataaaacttttcttttttaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006505 GPI anchor metabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K23504 SERAC1; protein SERAC1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003899 True 3140 mRNA 0.41 16 23823777 23845018

Neighbor

gene id symbol gene type direction distance location
AMCG00003900 tulp4 coding downstream 37014 23760602 ~ 23786763 (-)
AMCG00003895 NA coding downstream 170222 23642804 ~ 23653555 (-)
AMCG00003886 sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 coding downstream 463937 23342244 ~ 23359840 (-)
AMCG00003887 NA coding downstream 490218 23322329 ~ 23333559 (-)
AMCG00003888 rps12 coding downstream 504633 23316206 ~ 23319144 (-)
AMCG00003901 NA coding upstream 2003 23847021 ~ 23852940 (-)
AMCG00003906 NA coding upstream 202136 24047154 ~ 24075283 (-)
AMCG00003904 NA coding upstream 237647 24082665 ~ 24097083 (-)
AMCG00003905 NA coding upstream 253994 24099012 ~ 24103121 (-)
AMCG00003907 NA coding upstream 300925 24145943 ~ 24191342 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding downstream 1079 23820690 ~ 23822698 (-)
G4130 NA non-coding downstream 269253 23554276 ~ 23554524 (-)
G4101 NA non-coding downstream 400304 23399861 ~ 23423473 (-)
G4039 NA non-coding downstream 708092 23045315 ~ 23115685 (-)
G4000 NA non-coding downstream 967372 22856026 ~ 22856405 (-)
G4222 NA non-coding upstream 198650 24043668 ~ 24046142 (-)
G4255 NA non-coding upstream 279833 24124851 ~ 24125052 (-)
G4256 NA non-coding upstream 283523 24128541 ~ 24129966 (-)
G4353 NA non-coding upstream 790272 24635290 ~ 24635495 (-)
G4390 NA non-coding upstream 975823 24820841 ~ 24881609 (-)
AMCG00003896 tmem181 other downstream 65981 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 289895 23529519 ~ 23533882 (-)
G3523 NA other downstream 4317024 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 4398411 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 4450552 19361818 ~ 19373225 (-)
AMCG00003909 NA other upstream 418889 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 2052916 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 2120402 25965420 ~ 25998628 (-)
AMCG00003967 LOC107095448 other upstream 2985336 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 5479723 29324741 ~ 29329115 (-)

Expression


Co-expression Network