AMCG00003900 (tulp4)


Basic Information

Item Value
gene id AMCG00003900
gene name tulp4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23760602 ~ 23786763 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003900
ATGTCCTCATTGTTTCAGGTGGTGTTGGTGCGATGGAACGAACCGTTTCAGAAGCTGGCTACGTGTGATGCTGATGGAGGGATATTTGTGTGGATCCAATACGAGGGGAGGTGGTCAGTGGAACTGGTGAATGACCGCGGTGCACAGGTGAGCGATTTCACATGGAGCCATGATGGGACCCAGGCCCTCATCTCCTACAGAGATGGATTTGTGCTGGTGGGCTCAGTCAGTGGACAGAGGCACTGGTCCTCCGAGATTAATCTGGAGAGCCAGATCACCTGTGGAATATGGACACCAGATGACCAACAGGTGCTGTTTGGCACGGCGGACGGGCAGGTCATTGTGATGGACTGCCATGGGCGGATGCTGGCCCACGTGTTGCTCCACGAGTCAGACGGCATCGTGAGCATGTCCTGGAACTACCCCAGCTTCCTGGTGGAGGACAGCAGTGAGAGCGATACCGACTCGGATGACTACGCCCCACCACAAGTACAGAACATGAAACCCTTGCTAACAGTCAGCTTCACGTCGGGAGACATCAGTTTAATGAACAACTACGATGACCTCACGCCTGCTGTGATCCGCTCAGGACTGAAGGATGTGGTTGTGCAGTGGTGCTCCCAGGGCGACCTCCTGGCTGTGGCTGGAATCGAGAGGCACGGCCTCCCTACAGACCCTGGCTGCATCTCCCTGGTGAGGAATGCTCTGGTCAAATTCTACAATGTCCGTGGAGAGCACATCTACACACTGGAGACCCCTGCCCAGcgACCAATTACTACAATCTGCTGGGGCCATAGAGACTCTCGCCTGTTCCTGGCCTGTGGCCCAGCCCTCTATGTGGTCAGGGTGGAGCACCGCGTTGCCACTCTTCAGCTGATGTGTCAGCAGGCCATTGCTAGTGCATTGCGGGAAGAGAAGGATATCAGCAAGTTAACAATGCCCTCCCGCCTCTGCTCTTACCTCACCACAGCCTTCATCCCAACCATCAAGCCTCCGATCCCTGATCCCAACAACATGCGGGACTTTGTGAGCTACCCGACGGCCGGTAACGAGAGACTGCACTGCACCATGAAGCGCACTGAGGACAACCCGGAAGTGGGTGGCCCCTGCTACACTCTCTACCTGGAGTACCTTGGAGGCCTGGTGCCCATTCTCAAGGGGCGGCGCATCAGCAAGCTGCGGCCTGAGTTTGTCATCATGGATCCCAAAACCGATGGCAAAGCAGATGAGGTCTATGGGAACAGCCTGATTTCGATGATTGACAGCTGCAACTGTTCTGACTCCAGTGACATTGAGCTGAGTGATGACTGGGTTGGAAAGAAATCTCCAAAGATATCCAGAGGCAGCAAGTCACCCAAACTCCCTAGGATTAATATTGAAGCAAGAAAATCCCCTAAGCTTTCCCGGGCAACACAGGAGATATCCCGGTCACCACGGTTACCAATCAGGAAGCCCTCTATTGGATCTCCCAGTCTGGCTCGCAGAGAGTTTCCTCTAGAAGACATCACTCAGcataACTATCTGGCTCAGGTCACTTCTAATATATGGGGGACAAAGTTTAAGATTGTGGGACTTGCTGCCTTTTTGCCAACTAATCTTGGTGCAGTTATTTACAAGACGAGTCTGCTGCATCTCCAGCCCCGACAGATGACTATTTACCTGCCAGAAGTGCGTAAAGTTTCCATGGATTATATAAACCTGCCTGTGTTCAACCCCAATGTCTTCAGTGAGGATGAAGATGATTTGCCAGTAACTGGACCTTCTGGGGTACCTGACGACAACCCCCCCTGCACCGTTAACATTCCCATCGCCCCCATCCACAGCTCTGCTCAGGCTATGTCTCCAACACAGAGCATTGGCTTGGTCCAGTCCTTGCTGGCCAACCAGAATGTGCAGCTGGATGTCTTGACCAATCCTACTGCTACTGCTGCAGCCACAGCGGCAGTCGCGGGAGTCTCTGATCACAGCCAGGAGAGCGTGATGACCGCCCAGTATTCAGTACCCAACAGTAGCGGGAATGTGGAAGAAGTGTGTCGACCACGCACCCGGATTGTCTGCAACCAGAATATGTACACCCTGCAAGGCCCGGGCAGCTCCGCTACCTTGAGAGTCACCTCCTCAGAGAACAAGAAAGTACAGCTTCCTTGTGCCTCTGCTACGCTCAACCGGCTCACAGTACCACGTTACTCTATTCCAAGTGGTGACCCACCCCCTTACCCTGACCCAGCCAACCAGGTAAACTCAGGGAGGAATCCTGGCCAGCGCATAGACAGCAGCCTCATTCACGCGACCCTGAGACGCAACAGCAGGGAGGCAGCCCTCAAGGTTTCCCAGATGATGGATCCTCACAGAACTCTCCCAACCAAGTCAAAAGTTAATAGTGCACTTGCTGCTTCCTACCAGCAGAGAGTGTCCACAGCTCTGTATACCTGCAGCCAgtgtagtagtaatagtaacaGTGCCAATGCAAATTCAACTGGTgtgggcagcagcagcagtgctaGCAACAGCAATGGCATCGCAGGTGGGAGTGTTGTTCGACAAGATTTTCCAGCTGGAAGCAGCAGCCAACACAACACTGTCATTGTCCACTCCAACAGCACGTCACCTCTTGCTTCTCAGTCATCTTACAACTTGCTGAGCCCCCCAGACAGCTGCAGGGACAGGACAGAGTACATTAACTCTGCCTTTACTGAGGATGAAGCTCTTAGTCAGCAGTGCCAACTGGAAAAATCAATTCGACACCTAACTCTTGGTGACGTCAGTCTAACTGTAAAGCGCCCACCTCCCTATCAGTGGGATCCTGCTGCCACAGAGGAGATTTGGGTCCCCCAAGAACGGACTCCACTGGGCGCCCCTTCAGGGGCTCATAagcctcctcctcttctccttaACCCAGGCCAACACTTAGATGTGTCTCGGCTGCCATTTGTCCTTTCTCCAAAATCTCCCACCAGTCCCAACGCCCCTTTCCAGGCTGGCTACCAGATTGCCTTGCCTTTCCCCCCAGGTGCTGGATATGGTGGGCCCCAACTTCAGGCCATGCAGCCTCCTCCACAGCCCTGTTCACCCAAGGAAGTTGTGGCACCTGTGCCCTTCACACAGCAGGAGCCTACTGTGGTTCTACCACCTGGTTACCCAGCTAACCTGGCTAACTTGGCCTGTTGTCCACTGCCACCAATGTATCCAGGAGCTAGCGCCTGTGCTGGTCTTCAGCTTCCCCCCCTAGCCTTGCACCCTTGGAATACCTATAGCCCGTGCCCACCAATGCAGAACCCCTCAGGGACCCTGCCCACCAAAGCCCATCTGGTAGTGGAGAAGCCTGTtctttcccctcctccccctccagATCTCCAGAATCACATGGGACCCCCCGAGGCAATGGCTGAGGCTGGAGAAAACTTCCAGGAGGTGCTGTCTCTGAATGAAAGCCCTATTCCACAACGGGCAGACAAGTTCAGCAAAAAGAACCGCAAGAGGCTAGACAGCCGGGCTGAAGAAGCCAACGTTCCAGCCATCACAGAGGGCAAGGTGAAGAAGGAGGGCAGAGCTCTTAGTGACTTCAACTCTCTGATCTCCAGTCCCAGGCTTGGGCGAGAAAAGAAGAAACCCAAGAACCAGAAGGAGCAACTCAAGGCTAAGAAGCTGAATAAGACCAATGAGTTCCAGGACAGCTCAGAGAGTGAGCCAGAGCTCTTCATCAGCGGTGACGAGCTCATGAACCAGAGCCAGAGCAGCAAAAAGGGCTGGAAGAGCAAGCGGAGCCTGCGTACTGCAAGTGAGCTGGATGAGTTCAAGTGTCGCAAAGCCAGTGAGAAGGAGGACCGTGGCCTGGGCAGTCAGGGCTTTGTCTATGTCATGGCCAACAAGCAGCCACTGTGGAATGAGGCCACTCAGGTCTACCAGCTGGATTTTGGAGGACGGGTCACACAGGAGTCTGCGAAGAACTTCCAGATCGAATTGGAAGGAAGACAGGTGATGCAGTTCGGGAGGATTGACGGCAATGCTTACATCCTGGACTTTCAGTACCCCTTCTCGGCAGTGCAGGCCTTTGCAGTGGCCCTCGCCAATGTTACCCAGCGCCTCAAGTGAAGAGATGCTTGACAAAGAAAACACTGGCTGCTCTTTTCGAGGGTCATCTTAATAGTGAAACAAAAGCGTTTTTTGTTCATTGTGCATTGTGTCCGGAATTCGCCAAGATGGCAGGAATGCAAGGCCTTTCGCCGCCATATTGAGGGGCTGTATTTCTAGTACAGGGTCCAGGAAACGGTGACGATAATGACCCTGAGGTCACTCTTGGGAACGTGGGCTTAGCTTACTGTGGTTGTTCTGCAATTTATATGCTGCTCTAGCTTACAGAAGCTAGTAGAAACAGACTGTCCTCTTTACAGACTGCCTTATATCATatgttttgtttcctattaaTACTGTTACATGGAGTTTTTCAGTCCAGTTTTTAAACACAACAGTAATACTTGAAAATGATATCTGGAAAAGTAATAGCTCATTGCTAGACCTTACAGGTACTACAGAGCACTGAAATCAATAGCTGTAAGAAATTAGAGAAAACATAACTtctttaatggaaaataaaaataaaacttttctttgggctttattatgaatattatacatttcaacaaaaaatGACATTCTAAGTTTTTACATTATGTTTGGCTCAgctataaatatatgaatttgtTAGTGCCTAATTTTGTGCTTTGTATAAGTATTGAAGAAGGCTACAGGACAATTGTTGGGCTTTTTTTCCCAAATGAACATGAAAACAGTATCTCTTGATGTTGATTTTAGCTTTGAAATTCACAAGGATAGTacttgaaatgaaaaagatcaaatggaaaataaactgaaagtcctgcaattaatataaaaatacagtttttttgcttttagatTGGAGGAACTTGCTTGAATGAATTATCATTGGCTCCCATAGTTCAGTGCATTGAAGCTCCTGTAGAACAATTTCTGTGTtataagatatatttaaatgtatatattgtttgatCATTGAtattctaattattattgttctttctATTTATGTAGCATTAAGCAATCTTAGTACCTTGTTTACATGAATTTGaagatgttaatttaatttgggaGACAGGAGGCTAAATTAAGATTCtacctttttaaatttaaatttcctttttttgtttttgtttgttattggtTGCTGTGTTGTTCTGGATGTGTAAGTCAACTTTTAATTGTTCATCGTGACAGCTgtcaccaagaaaaaaaaaaaaagtttaagtgAGAGTTAAACAGTATTATACGTTTTCTCATATGAAGTGGTTTTCACCTCCTGTCGCTTCTGTGAAGTGATCATAAAGGCATTCTTTACGAGCATCAACTGCTCTGTAAGCAAGGTACAggacatatttttgtatatttcataattgccatttcatacttttttattttgtatcatgtaAGCGTGCATTACATATCATTCAATCATTGTAAAGCGAACCAGTGTTTTGGGGAGGGATATTGTTTTCAGGCTGACagtatgtgaaaatgtaattgaagaaTGCAATGACGCTTTTCAAAATTTCATCACAGATTAAACACACCAGGCTCATAGTCTGTCAGTGGTGGAAGTTGACCTGATGAAGGACATTGTTAGAAGATACAGAATTGTTTATTGTAGCCTTTGATTAAAGGTGTGACGTGATCACCTCCATATTTGCATCGGGCAGGAGCAGACCGCACATTTTTCCCCTTTATAAATTGAAAAAAGCGAAAGGGTCTGTCAGTGTGAGCCACGATTTGCATGCCCATTCATTTAGTGAGAATGCATATGGTCTCTCCACATCTGCAAGACTTGTGTTTACAAAggtttctttttataaatgtcGGTTTTCAGCCAAATTTGATCTTTAATGCCAAGTAATGTCCAATCTGGTACAAATATGTATTCCCATGATTAATCCCAAAGttgagaaatgtaatttgtgtcTTGCCAAAGGCTGGATTGTGGTACTTGTAACAGTTCCACCTTATATATTTGAGAATTTTTCATTATGTACACCAAGCGATAGATAGTCGTACGGTCATGTGTGTAAGTGATGTACGTTGTTTGCCATCAGCTCTGCCCATAACATGGTGAATGTTTATCTGACTCTATCTATCACTGTTTGGTCctctttataaaatgtgtaagtGTGTCCTCCATTTTGAAGTCCTTTATGGGATTCATTAGCCTGTAGAAAAAATATCACATTGTGGCAAATGCCCTGTTGGAATGAACATCCGAAAGGAAGCAGAATTTGAATGCTttcaagacaaataaataaatagttgtaatGGTCCGTTATGGCAAAATGTTTGGAGGTTGGTTTTAAGATGAAATTGTTTTATGCAATTTAAGATGCTGTTTACGcatcattcaaaatacattctgTTATAACAAATAGAAAGTAACATTCTTTACAGGAAAAAAGTGTGACTGAATCAGAGTTAGTATTTCATTTCTACACTAATGAAGTGTGTCTTTTAAAGGTTCTAGTCCTGGCACAATTTGCTTGCCTAGCATCTTGCTTCACGTGGTGTAGAGATTGATTGGTAAGCACTAATACGTCGGGCGACATCAATTGAGTCGATTAGATTCCGGTTTGATTTGTGTGATCTCAAGATTGGGCTTCAGATGGGTGAGGCAGACAGGTCTGAGTAAATTGTTTGCTGTAATAAATAACTGGTCACATTGGCTGAAAAAACAAAGTCAGGGTGAACTTGTGGGTTCAATGCAACCTTTTCTCACTTAGAAAAAGAATGtagaatgttgttttttctgttctttttatgTATGCTTTGATTGCCTGGCATTGACAGTTTATTTGTGCaat

Function

symbol description
tulp4 Predicted to be involved in protein ubiquitination. Located in cytoplasm.

NR:

description
PREDICTED: tubby-related protein 4 isoform X2

GO: NA

KEGG:

id description
K24720 TULP4; tubby-related protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003900 True 6878 mRNA 0.46 14 23760602 23786763

Neighbor

gene id symbol gene type direction distance location
AMCG00003895 NA coding downstream 107047 23642804 ~ 23653555 (-)
AMCG00003886 sh3bgrl2,LOC107549062,LOC107701732,LOC107671851,LOC107708803,LOC107571206 coding downstream 400762 23342244 ~ 23359840 (-)
AMCG00003887 NA coding downstream 427043 23322329 ~ 23333559 (-)
AMCG00003888 rps12 coding downstream 441458 23316206 ~ 23319144 (-)
AMCG00003880 tbpl1,LOC107756392,LOC107571264,LOC107549057,LOC107701734 coding downstream 671006 23082938 ~ 23089596 (-)
AMCG00003899 NA coding upstream 37014 23823777 ~ 23845018 (-)
AMCG00003901 NA coding upstream 60258 23847021 ~ 23852940 (-)
AMCG00003906 NA coding upstream 260391 24047154 ~ 24075283 (-)
AMCG00003904 NA coding upstream 295902 24082665 ~ 24097083 (-)
AMCG00003905 NA coding upstream 312249 24099012 ~ 24103121 (-)
G4130 NA non-coding downstream 206078 23554276 ~ 23554524 (-)
G4101 NA non-coding downstream 337129 23399861 ~ 23423473 (-)
G4039 NA non-coding downstream 644917 23045315 ~ 23115685 (-)
G4000 NA non-coding downstream 904197 22856026 ~ 22856405 (-)
G3984 NA non-coding downstream 988818 22771572 ~ 22771784 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding upstream 33927 23820690 ~ 23822698 (-)
G4222 NA non-coding upstream 256905 24043668 ~ 24046142 (-)
G4255 NA non-coding upstream 338088 24124851 ~ 24125052 (-)
G4256 NA non-coding upstream 341778 24128541 ~ 24129966 (-)
G4353 NA non-coding upstream 848527 24635290 ~ 24635495 (-)
AMCG00003896 tmem181 other downstream 2806 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 226720 23529519 ~ 23533882 (-)
G3523 NA other downstream 4253849 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 4335236 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 4387377 19361818 ~ 19373225 (-)
AMCG00003909 NA other upstream 477144 24263907 ~ 24296246 (-)
G4521 fig4 other upstream 2111171 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 2178657 25965420 ~ 25998628 (-)
AMCG00003967 LOC107095448 other upstream 3043591 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 5537978 29324741 ~ 29329115 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011244 tulp4b coding NC_007128.7 CM002901.2 8183393 ~ 8211012 (+)
grasscarp (Ctenopharyngodon idella) CI01000068_00603672_00617563 TULP4A, TULP4 coding CI01000068 null 602704 ~ 617563 (-)