AMCG00003908


Basic Information

Item Value
gene id AMCG00003908
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24223385 ~ 24278980 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003908
ATGGCGTACACAGTCATCAGATGCCCCCTCATGTCCATGGAGGATGTGCTGAAGATAACTCCCACCCCTCTTGGTGAAGGGAAGAGCACGGTGACTATCGGCCTGGTCCAGGCACTCACTGCCCATCTCAAGTCCAACTCCTTTGCGTGCTTGAGGCAGCCTTCACAAGGACCCACCTTTGGTGTTAAAGACTATCAGCAGTTCATAATTCTGCAGGGCTGGGGTTTGGCCATGCTGGGAAAGAGTGTGTtcccatgtgtgtctgtgtgcactgTGGAGCTGGGGTGCAGGGGGGGAGCGGCGGGAGGTGGATACGCTCAAGTCATCCCAATGGAGGAATTCAATCTTCACTTGACTGGAGATATTCATGCTATCACTGCAGCCAACAACCTCCTAGCAGCAGCCATCGATGCCAGGATGTTTCATGAAGCCTCCCAGACAGACAAGGCCTTGTACAACAGACTTGTGCCATCTGTCAATGGAGTCCGAATGTTCTCCTCTATTCAGGTTGCCAGGCTACAACGTCTGGGCATTAACAAGACTGACCCCAGCACACTGACTCCAGAGGAGATAAACTTGTTTGTGCGCCTGGACATTGACCCGTCAACAATCTCATGGCAGAGAGCAAGTGAGATTATGGCAATCCTGGCCTTGACAGATGGGTTGGCAGATATGAAGGACAGACTTGGTCGGATGGTGGTCGGCAGTGACAAGAAAGGGCAGCCGGTGACTGCAGATGACTTGGGTGTAACTGGAGCTTTAGCTGTTCTGATGAAAGACGCCATCAAACCAACGCTAATGCAGACTCTGGAGGGCACGCCGGTCTTCGTGCATGCGGGCCCGTTTGCAAACATCGCACACGGCAACTCATCCGTTCTGGCAGACAAGATTGCGCTGAAGGTGGTTGGTGAAGGAGGATTTGTAGTGACAGAAGCTGGCTTTGGTGCTGACATTGGGATGGAAAAGTTTTTCAACATCAAATGTCGAGCATCTGGCCTGCGTCCAAATGTCGTTGTTTTGGTTGCCACAGTGAGGGCCTTAAAAATGCACGGTGGAGGTCCCAATGTCACTGCAGGTGCACCTTTGTCTAAAGAATACACGGAGGAGCATCCTTTCTGTGCTTCTCATTACCAGAACCTCACTTTGGTTGAAGATGGCTGCAGCAATCTAAAGAAACAGATCCAGATTGCCCACCTCTTCGGGGTTCCTGTGGTTGTAGCATTGAACGTGTTCAAAACGGACTCCACAGCAGAGATTGACCTGGTGTGTCGGATCGCCAAAGACTCTGGGGCTTTTGATGCTGTGCCGTGTCACCATTGGTCAAGAGGAGGCAGGGGCTCCATAGAGCTGGCCAAGGCAGTGAAAGAAGCAGCCAATCAGCAAATTAACTTTGAATTTACTTATGACCTACAGATGCCCATTGTGGAAAAGATACGAACGATTGCACAGAGAGTCTATGGGGCCAAGGATATTGAACTGTCACCAGAGGCTCAAGCTAAAATAGATTGTTACAATAAACAGGGTTTCGGAGCCCTTCCCATCTGCATGGCCAAGACTcacctgtctctgtctcaccAGCCGGACAAGAAGGGCGTTCCCTCAGGATTCATTCTGCCCATTCGCGATGTGCGTGCCAGCATTGGGGCTGGGTTCATCTACCCTCTGGTTGGGACGGTGAGTGAAAATCTTGAGCAATGGAGCTTTCCGTTTGCATCAACGGGTTAA

Function

GO:

id name namespace
GO:0009396 folic acid-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003908 True 1725 mRNA 0.51 16 24223385 24278980

Neighbor

gene id symbol gene type direction distance location
AMCG00003907 NA coding downstream 32043 24145943 ~ 24191342 (-)
AMCG00003905 NA coding downstream 120264 24099012 ~ 24103121 (-)
AMCG00003904 NA coding downstream 126302 24082665 ~ 24097083 (-)
AMCG00003906 NA coding downstream 148102 24047154 ~ 24075283 (-)
AMCG00003901 NA coding downstream 370445 23847021 ~ 23852940 (-)
AMCG00003916 NA coding upstream 377497 24656477 ~ 24683766 (-)
AMCG00003919 fbxo30,LOC108239090,LOC103144688,LOC102226384 coding upstream 408233 24687213 ~ 24695742 (-)
AMCG00003921 LOC105418861 coding upstream 418091 24697071 ~ 24708960 (-)
AMCG00003920 NA coding upstream 434249 24713229 ~ 24744190 (-)
AMCG00003927 NA coding upstream 1274558 25553538 ~ 25558348 (-)
G4256 NA non-coding downstream 93419 24128541 ~ 24129966 (-)
G4255 NA non-coding downstream 98333 24124851 ~ 24125052 (-)
G4222 NA non-coding downstream 177243 24043668 ~ 24046142 (-)
G4174 gtf2h5,tf2h5,LOC107659223,LOC107721375 non-coding downstream 400687 23820690 ~ 23822698 (-)
G4130 NA non-coding downstream 668861 23554276 ~ 23554524 (-)
G4353 NA non-coding upstream 356310 24635290 ~ 24635495 (-)
G4390 NA non-coding upstream 541861 24820841 ~ 24881609 (-)
G4397 NA non-coding upstream 589731 24868711 ~ 24873886 (-)
G4415 NA non-coding upstream 784574 25063554 ~ 25068242 (-)
G4455 NA non-coding upstream 1187272 25466252 ~ 25467433 (-)
AMCG00003896 tmem181 other downstream 465589 23740585 ~ 23757796 (-)
AMCG00003893 NA other downstream 689503 23529519 ~ 23533882 (-)
G3523 NA other downstream 4716632 19444016 ~ 19506753 (-)
G3517 LOC101154678 other downstream 4798019 19424963 ~ 19425366 (-)
AMCG00003825 NA other downstream 4850160 19361818 ~ 19373225 (-)
G4521 fig4 other upstream 1618954 25897934 ~ 25901612 (-)
AMCG00003946 NA other upstream 1686440 25965420 ~ 25998628 (-)
AMCG00003967 LOC107095448 other upstream 2551374 26830354 ~ 26869578 (-)
AMCG00004006 NA other upstream 5045761 29324741 ~ 29329115 (-)
AMCG00004038 LOC105015767 other upstream 5905638 30184618 ~ 30220135 (-)

Expression


Co-expression Network